Salmonella in food surveillance: PCR, immunoassays, and other rapid detection and quantification methods

Food Research International

Volumn 45, Issue 2, 2012, Pages 802-808

  Cheung, Pui Yi ^a   Kam, Kai Man ^a  

^a Public Health Laboratory Services Branch   (Hong Kong)

Author keywords

Detection; Quantification; Rapid methods; Salmonella

Indexed keywords

CULTURE METHODS; ETIOLOGIC AGENTS; FLUOROGENICS; FOOD BORNE DISEASE; FOOD POISONING; HONG-KONG; PUBLIC HEALTH SERVICES; QUANTIFICATION; QUANTIFICATION METHODS; RAPID DETECTION; RAPID METHOD; RAPID METHODS; REAL-TIME PCR METHOD; STANDARD METHOD; TESTING LABORATORIES;

ERROR DETECTION; IMMUNOLOGY; INDUSTRIAL LABORATORIES; POLYMERASE CHAIN REACTION; SALMONELLA; TURNAROUND TIME;

FOOD MICROBIOLOGY;

BACTERIA (MICROORGANISMS); SALMONELLA;

EID: 84857391917     PISSN: 09639969     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.foodres.2011.12.001     Document Type: Article

References (69)

1. Abouzeed Y.M., Hariharan H., Poppe C., Kibenge F.S. Characterization of Salmonella isolates from beef cattle, broiler chickens and human sources on Prince Edward Island. Comparative Immunology, Microbiology and Infectious Diseases 2000, 23:253-266.
2. Allos B.M., Moore M.R., Griffin P.M., Tauxe R.V. Surveillance for sporadic foodborne disease in the 21st Century: The FoodNet perspective. Clinical Infectious Diseases 2004, 38(Suppl. 3):S115-S120.
3. Almeida C., Azevedo N.F., Fernandes R.M., Keevil C.W., Vieira M.J. Fluorescence in situ hybridization method using a peptide nucleic acid probe for identification of Salmonella spp. in a broad spectrum of samples. Applied and Environmental Microbiology 2010, 76:4476-4485.
4. Badosa E., Chico N., Pla M., Parés D., Montesinos E. Evaluation of ISO enrichment real-time PCR methods with internal amplification control for detection of Listeria monocytogenes and Salmonella enterica in fresh fruit and vegetables. Letters in Applied Microbiology 2009, 49:105-111.
5. Bailey J.S., Cosby D.E. Detection of Salmonella from chicken rinses and chicken hot dogs with the automated BAX PCR system. Journal of Food Protection 2003, 66:2138-2140.
6. Bäumler A.J., Hargis B.M., Tsolis R.M. Tracing the origins of Salmonella outbreaks. Science 2000, 287:50-52.
7. Brands D.A., Inman A.E., Gerba C.P., Maré C.J., Billington S.J., Saif L.A., et al. Prevalence of Salmonella spp. in oysters in the United States. Applied and Environmental Microbiology 2005, 71:893-897.
8. Brasher C.W., DePaola A., Jones D.D., Bej A.K. Detection of microbial pathogens in shellfish with multiplex PCR. Current Microbiology 1998, 37:101-107.
9. Busani L., Cigliano A., Taioli E., Caligiuri V., Chiavacci L., Di Bella C., et al. Prevalence of Salmonella enterica and Listeria monocytogenes contamination in foods of animal origin in Italy. Journal of Food Protection 2005, 68:1729-1733.
10. Carli K.T., Unal C.B., Caner V., Eyigor A. Detection of salmonellae in chicken feces by a combination of tetrathionate broth enrichment, capillary PCR, and capillary gel electrophoresis. Journal of Clinical Microbiology 2001, 39:1871-1876.
11. Centers for Disease Control and Prevention Salmonella surveillance: Annual summary, 2004 2005, US Department of Health and Human Services, CDC, Atlanta, Georgia.
12. Centers for Disease Control and Prevention Surveillance for foodborne disease outbreaks - United States, 2006. Morbidity and Mortality Weekly Report 2009, 58(22):609-615.
13. Chen W., Martinez G., Mulchandani A. Molecular beacons: A real-time polymerase chain reaction assay for detecting Salmonella. Analytical Chemistry 2000, 280:166-172.
14. Chen S., Yee A., Griffiths M., Larkin C., Yamashiro C.T., Behari R., et al. The evaluation of a fluorogenic polymerase chain reaction assay for the detection of Salmonella species in food commodities. International Journal of Food Microbiology 1997, 35:239-250.
15. Cheung P.-Y., Chan C.W., Wong W., Cheung T.L., Kam K.M. Evaluation of two real-time polymerase chain reaction pathogen detection kits for Salmonella spp. in food. Letters in Applied Microbiology 2004, 39:509-515.
16. Cheung P.-Y., Kwok K.K., Kam K.M. Application of BAX system, Tecra Unique™ Salmonella test, and a conventional culture method for the detection of Salmonella in ready-to-eat and raw foods. Journal of Applied Microbiology 2007, 103:219-227.
17. Cohen H.J., Mechanda S.M., Lin W. PCR amplification of the fimA gene sequence of Salmonella typhimurium, a specific method for detection of Salmonella spp. Applied and Environmental Microbiology 1996, 62:4303-4308.
18. Croci L., Delibato E., Volpe G., De Medici D., Palleschi G. Comparison of PCR, electrochemical enzyme-linked immunosorbent assays, and standard culture method for detecting Salmonella in meat products. Applied and Environmental Microbiology 2004, 70:1393-1396.
19. D'Aoust J.-Y., Pagotto F., Akhtar M., Bussey J., Cooper C., McDonald C., et al. Evaluation of the BAX gel and fluorometric systems for the detection of foodborne Salmonella. Journal of Food Protection 2007, 70:835-840.
20. D'Aoust J.-Y., Purvis U. Isolation and identification of Salmonella from foods (MFHPB-20). Compendium of analytical methods 1998, Vol. 2. Health Canada, Ottawa.
21. Davies R.H., Wales A.D. Investigations into Salmonella contamination in poultry feedmills in the United Kingdom. Journal of Applied Microbiology 2010, 109:1430-1440.
22. Elizaquível P., Aznar R. Comparison of four commercial DNA extraction kits for PCR detection of Listeria monocytogenes, Salmonella, Escherichia coli O157:H7, and Staphylococcus aureus in fresh, minimally processed vegetables. Journal of Food Protection 2008, 71:2110-2114.
23. Eyigor A., Temelli S., Carli K.T. Evaluation of ISO 6579 and FDA-BAM methods to complement real-time polymerase chain reaction for the detection of Salmonella in naturally contaminated poultry meat and red meat. Foodborne Pathogens and Disease 2010, 7:921-927.
24. Fakhr M.K., McEvoy J.M., Sherwood J.S., Logue C.M. Adding a selective enrichment step to the iQ-Check™ real-time PCR improves the detection of Salmonella in naturally contaminated retail turkey meat products. Letters in Applied Microbiology 2006, 43:78-83.
25. Food and Environmental Hygiene Department FEHD Microbiological Guidelines for ready-to-eat food 2007, Centre for Food Safety, Food and Environmental Hygiene Department, Hong Kong, Online, Last revision date: 15 October 2010. http://www.cfs.gov.hk/english/whatsnew/whatsnew_act/files/MBGL_RTE%20food_e.pdf.
26. Food and Environmental Hygiene Department FEHD Food surveillance programme 2010, Food and Environmental Hygiene Department, Hong Kong, Online, Last revision date: 18 October 2010. http://www.cfs.gov.hk/english/programme/programme_fs/programme_fs.html.
27. Fukushima H., Katsube K., Hata Y., Kishi R., Fujiwara S. Rapid separation and concentration of food-borne pathogens in food samples prior to quantification by viable-cell counting and real-time PCR. Applied and Environmental Microbiology 2007, 73:92-100.
28. González-Escalona N., Hammack T.S., Russell M., Jacobson A.P., De Jesus A.J., Brown E.W., et al. Detection of live Salmonella sp. cells in produce by a TaqMan-based quantitative reverse transcriptase real-time PCR targeting invA mRNA. Applied and Environmental Microbiology 2009, 75:3714-3720.
29. Gorski L., Liang A.S. Effect of enrichment medium on real-time detection of Salmonella enterica from lettuce and tomato enrichment cultures. Journal of Food Protection 2010, 73:1047-1056.
30. Hadjinicolaou A.V., Demetriou V.L., Emmanuel M.A., Kakoyiannis C.K., Kostrikis L.G. Molecular beacon-based real-time PCR detection of primary isolates of Salmonella Typhimurium and Salmonella Enteritidis in environmental and clinical samples. BMC Microbiology 2009, 9:97.
31. Hanai K., Satake M., Nakanishi H., Venkateswaran K. Comparison of commercially available kits with standard methods for detection of Salmonella strains in foods. Applied and Environmental Microbiology 1997, 63:775-778.
32. Hara-Kudo Y., Yoshino M., Kojima T., Ikedo M. Loop-mediated isothermal amplification for the rapid detection of Salmonella. FEMS Microbiology Letters 2005, 253:155-161.
33. Health Protection Agency (HPA) Detection of Salmonella species. National standard method F13 issue 3.1 2008, http://www.hpa-standardmethods.org.uk/pdf_sops.asp.
34. Hughes D., Dailianis A.E., Hill L., McIntyre D.A., Anderson A. Tecra® Unique™ Test for rapid detection of Salmonella in food: Collaborative study. Journal of AOAC International 2001, 84:416-429.
35. International Organization for Standardization (ISO) ISO 6579:2002, Microbiology of food and animal feeding stuffs - Horizontal method for the detection of Salmonella spp 2002.
36. Jin S.Q., Yin B.C., Ye B.C. Multiplexed bead-based mesofluidic system for detection of food-borne pathogenic bacteria. Applied and Environmental Microbiology 2009, 75:6647-6654.
37. Keith M. Evaluation of an automated enzyme-linked fluorescent immunoassay system for the detection of salmonellae in foods. Journal of Food Protection 1997, 60:682-685.
38. Kimura B., Kawasaki S., Fujii T., Kusunoki J., Itoh T., Flood S.J. Evaluation of TaqMan PCR assay for detecting Salmonella in raw meat and shrimp. Journal of Food Protection 1999, 62:329-335.
39. Koyuncu S., Andersson M.G., Häggblom P. Accuracy and sensitivity of commercial PCR-based methods for detection of Salmonella enterica in feed. Applied and Environmental Microbiology 2010, 76:2815-2822.
40. Kumar R., Surendran P.K., Thampuran N. Rapid quantification of Salmonella in seafood using real-time PCR assay. Journal of Microbiology and Biotechnology 2010, 20:569-573.
41. Lam T. Salmonellosis: Changing patterns and trends. Communicable Diseases Watch 2005, 2(12:45-47. Department of Health, Hong Kong, Online. http://www.chp.gov.hk/files/pdf/grp-cdw_v2_12_en_20050615.pdf.
42. Lam T., Tam C.M., Wong C. Review of notifiable diseases in Hong Kong, 2009. Public Health and Epidemiology Bulletin 2010, 19(2:35-50. Department of Health, Hong Kong, Online. http://www.chp.gov.hk/files/pdf/bulletin_v19_n2_23082010.pdf.
43. Li Y., Mustapha A. Evaluation of four template preparation methods for polymerase chain reaction-based detection of Salmonella in ground beef and chicken. Letters in Applied Microbiology 2002, 35:508-512.
44. Liming S.H., Bhagwat A.A. Application of a molecular beacon-real-time PCR technology to detect Salmonella species contaminating fruits and vegetables. International Journal of Food Microbiology 2004, 95:177-187.
45. Liu T., Liljebjelke K., Bartlett E., Hofacre C., Sanchez S., Maurer J.J. Application of nested polymerase chain reaction to detection of Salmonella in poultry environment. Journal of Food Protection 2002, 65:1227-1232.
46. Ma E. Typhoid fever outbreak in Yuen Long district. Communicable Diseases Watch 2006, 3(3):9-10. Department of Health, Hong Kong, Online. http://www.chp.gov.hk/files/pdf/CDW_V3_3v.pdf.
47. Magnino S., Colin P., Dei-Cas E., Madsen M., McLauchlin J., Nöckler K., et al. Biological risks associated with consumption of reptile products. International Journal of Food Microbiology 2009, 134:163-175.
48. Malorny B., Löfström C., Wagner M., Krämer N., Hoorfar J. Enumeration of Salmonella bacteria in food and feed samples by real-time PCR for quantitative microbial risk assessment. Applied and Environmental Microbiology 2008, 74:1299-1304.
49. Meyer C., Thiel S., Ullrich U., Stolle A. Salmonella in raw meat and by-products from pork and beef. Journal of Food Protection 2010, 73:1780-1784.
50. Ohtsuka K., Yanagawa K., Takatori K., Hara-Kudo Y. Detection of Salmonella enterica in naturally contaminated liquid eggs by loop-mediated isothermal amplification, and characterization of Salmonella isolates. Applied and Environmental Microbiology 2005, 71:6730-6735.
51. Park Y.S., Lee S.R., Kim Y.G. Detection of Escherichia coli O157:H7, Salmonella spp., Staphylococcus aureus and Listeria monocytogenes in Kimchi by multiplex polymerase chain reaction (mPCR). The Journal of Microbiology 2006, 44:92-97.
52. Patel J.R., Bhagwat A.A., Sanglay G.C., Solomon M.B. Rapid detection of Salmonella from hydrodynamic pressure-treated poultry using molecular beacon real-time PCR. Food Microbiology 2006, 23:39-46.
53. Patel M.K., Chen S., Pringle J., Russo E., Viñaras J., Weiss J., et al. A prolonged outbreak of Salmonella Montevideo infections associated with multiple locations of a restaurant chain in Phoenix, Arizona, 2008. Journal of Food Protection 2010, 73:1858-1863.
54. Perelle S., Dilasser F., Malorny B., Grout J., Hoorfar J., Fach P. Comparison of PCR-ELISA and LightCycler real-time PCR assays for detecting Salmonella spp. in milk and meat samples. Molecular and Cell Probes 2004, 18:409-420.
55. Rump L.V., Asamoah B., Gonzalez-Escalona N. Comparison of commercial RNA extraction kits for preparation of DNA-free total RNA from Salmonella cells. BMC Research Notes 2010, 3:211.
56. Seo K.H., Valentin-Bon I.E., Brackett R.E. Detection and enumeration of Salmonella Enteritidis in homemade ice cream associated with an outbreak: Comparison of conventional and real-time PCR methods. Journal of Food Protection 2006, 69:639-643.
57. Shao Y., Zhu S., Jin C., Chen F. Development of multiplex loop-mediated isothermal amplification-RFLP (mLAMP-RFLP) to detect Salmonella spp. and Shigella spp. in milk. International Journal of Food Microbiology 2011, 148:75-79.
58. Silbernagel K., Jechorek R., Carver C., Barbour W.M., Mrozinski P. Evaluation of the BAX system for detection of Salmonella in selected foods: Collaborative study. Journal of AOAC International 2003, 86:1149-1159.
59. Soumet C., Ermel G., Rose V., Rose N., Drouin P., Salvat G., et al. Identification by a multiplex PCR-based assay of Salmonella typhimurium and Salmonella enteritidis strains from environmental swabs of poultry houses. Letters in Applied Microbiology 1999, 29:1-6.
60. Swamy S.C., Barnhart H.M., Lee M.D., Dreesen D.W. Virulence of determinants invA and spvC in salmonellae isolated from poultry products, wastewater, and human sources. Applied and Environmental Microbiology 1996, 62:3768-3771.
61. Techathuvanan C., Draughon F.A., D'Souza D.H. Loop-mediated isothermal amplification (LAMP) for the rapid and sensitive detection of Salmonella Typhimurium from pork. Journal of Food Science 2010, 75:M165-M172.
62. Tomazelli I.B., De Freitas J.B., Fabbi L.M., Filipini T.A., Da Silva C.M., Bedin J.M., et al. Comparison of the BAX system PCR method to Brazil's official method for the detection of Salmonella in food, water, and environmental samples. Journal of Food Protection 2008, 71:2442-2447.
63. Ueda S., Kuwabara Y. The rapid detection of Salmonella from food samples by loop-mediated isothermal amplification (LAMP). Biocontrol Science 2009, 14:73-76.
64. Uyttendaele M., Vanwildemeersch K., Debevere J. Evaluation of real-time PCR vs automated ELISA and a conventional culture method using a semi-solid medium for detection of Salmonella. Letters in Applied Microbiology 2003, 37:386-391.
65. Vugia D.J., Samuel M., Farley M.M., Marcus R., Shiferaw B., Shallow S., et al. Invasive Salmonella infections in the United States, FoodNet, 1996-1999: Incidence, serotype distribution, and outcome. Clinical Infectious Diseases 2004, 38(Suppl. 3):S149-S156.
66. Wang M., Cao B., Gao Q., Sun Y., Liu P., Feng L., et al. Detection of Enterobacter sakazakii and other pathogens associated with infant formula powder by use of a DNA microarray. Journal of Clinical Microbiology 2009, 47:3178-3184.
67. Wang L., Mustapha A. EMA-real-time PCR as a reliable method for detection of viable Salmonella in chicken and eggs. Journal of Food Science 2010, 75:M134-M139.
68. Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Applied and Environmental Microbiology 1997, 63:3741-3751.
69. Wolffs P.F.G., Glencross K., Thibaudeau R., Griffiths M.W. Direct quantitation and detection of Salmonellae in biological samples without enrichment, using two-step filtration and real-time PCR. Applied and Environmental Microbiology 2006, 72:3896-3900.