Multiplexed bead-based mesofluidic system for detection of food-borne pathogenic bacteria

Applied and Environmental Microbiology

Volumn 75, Issue 21, 2009, Pages 6647-6654

  Jin, Sheng Quan ^a   Yin, Bin Cheng ^a   Ye, Bang Ce ^a  

^a EAST CHINA UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PATHOGENS; BACTERIAL SPECIES; CAMPYLOBACTER JEJUNI; ENTEROBACTER; ESCHERICHIA COLI O157:H7; FOOD-BORNE BACTERIA; FOOD-BORNE PATHOGENIC BACTERIA; HIGH SENSITIVITY; HYBRIDIZATION SIGNAL; ISOTHIOCYANATES; LIMITS OF QUANTIFICATION; LISTERIA MONOCYTOGENES; MEAT SAMPLES; MICROARRAY SCANNER; MICROBEADS; MODIFIED OLIGONUCLEOTIDES; PCR PRODUCTS; SHORT SEQUENCES; SIMULTANEOUS DETECTION; STAPHYLOCOCCUS AUREUS; VIBRIO PARAHAEMOLYTICUS;

AMINES; BACTERIOLOGY; ESCHERICHIA COLI; MICROCHANNELS; MULTIPLEXING; NUCLEIC ACIDS; OLIGONUCLEOTIDES; SILICONES; SYNTHESIS (CHEMICAL);

BACTERIA;

DIMETICONE; ISOTHIOCYANIC ACID;

FOOD; MICROBIAL COMMUNITY; PATHOGENICITY; SAMPLING; SPECIES DIVERSITY;

ARTICLE; BACTERIUM DETECTION; CAMPYLOBACTER JEJUNI; ENTEROBACTER SAKAZAKII; ESCHERICHIA COLI; HYBRIDIZATION; LISTERIA MONOCYTOGENES; MICROFLUIDIC ANALYSIS; MULTIPLEXED BEAD BASED MESOFLUIDIC SYSTEM; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SALMONELLA; SHIGELLA; STAPHYLOCOCCUS AUREUS; VIBRIO PARAHAEMOLYTICUS;

BACTERIA; BACTERIOLOGICAL TECHNIQUES; FOOD MICROBIOLOGY; MICROSPHERES; MOLECULAR DIAGNOSTIC TECHNIQUES; NUCLEIC ACID HYBRIDIZATION; SENSITIVITY AND SPECIFICITY; TIME FACTORS;

BACTERIA (MICROORGANISMS); CAMPYLOBACTER JEJUNI; ENTEROBACTER SAKAZAKII; ESCHERICHIA COLI; LISTERIA MONOCYTOGENES; SALMONELLA; SHIGELLA; STAPHYLOCOCCUS AUREUS; VIBRIO PARAHAEMOLYTICUS;

EID: 70350475889     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00854-09     Document Type: Article

References (44)

1. Afghani, B., and H. R. Stutman. 1996. Polymerase chain reaction for diagnosis of M. tuberculosis: comparison of simple boiling and a conventional method for DNA extraction. Biochem. Mol. Med. 57:14-18.
2. Aysan, Y., N. Yildiz, and F. Yucel. 2004. Identification of Pseudomonas viridiflava on tomato by traditional methods and enzyme-linked immunosorbent assay. Phytoparasitica 32:146-153.
3. Beyor, N., T. Seo, P. Liu, and R. Mathies. 2008. Immunomagnetic beadbased cell concentration microdevice for dilute pathogen detection. Biomed. Microdevices 10:909-917.
4. Bodrossy, L., and A. Sessitsch. 2004. Oligonucleotide microarrays in microbial diagnostics. Curr. Opin. Microbiol. 7:245-254.
5. Buchanan, R. L., and F. J. Schultz. 1994. Comparison of the Tecra VIA kit, Oxoid BCET-REPLA kit, and CHO cell culture assay for the detection of Bacillus cereus diarrhoeal enterotoxin. Lett. Appl. Microbiol. 19:353-356.
6. Call, D. R. 2005. Challenges and opportunities for pathogen detection using DNA microarrays. Crit. Rev. Microbiol. 31:91-95.
7. Clarridge, J. E. 2004. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin. Microbiol. Rev. 17:840-862.
8. Day, T. L., S. R. Tatani, S. Notermans, and R. W. Bennnett. 1994. A comparison of ELISA and RPLA for detection of Bacillus cereus diarrhoeal enterotoxin. J. Appl. Bacteriol. 77:9-13.
9. de la Rosa, C., P. A. Tilley, J. D. Fox, and K. V. Kaler. 2008. Microfluidic device for dielectrophoresis manipulation and electrodisruption of respiratory pathogen Bordetella pertussis. IEEE Trans. Biomed. Eng. 55:2426-2432.
10. Doumith, M., C. Buchrieser, P. Glaser, C. Jacquet, and P. Martin. 2004. Differentiation of the major Listeria monocytogenes serovars by multiplex PCR. J. Clin. Microbiol. 42:3819-3822.
11. Fischer, B., L. D. Mao, M. Gungormus, C. Tamerler, M. Sarikaya, and H. Koser. 2008. Ferro-microfluidic device for pathogen detection, p. 907-910. In Proceedings of the 3rd IEEE International Conference on Nano/Micro Engineered and Molecular Systems, vol.1. IEEE, Los Alamitos, CA.
12. Fricker, M., U. Messelhausser, U. Busch, S. Scherer, and M. Ehling-Schulz. 2007. Diagnostic real-time PCR assays for the detection of emetic Bacillus cereus strains in foods and recent food-borne outbreaks. Appl. Environ. Microbiol. 73:1892-1898.
13. Gergova, R. T., I. D. Iankov, I. H. Haralambieva, and I. G. Mitov. 2007. Bactericidal monoclonal antibody against Moraxella catarrhalis lipooligosaccharide cross-reacts with Haemophilus spp. Curr. Microbiol. 54:85-90.
14. Institute of Food Technologists. 2004. Scientific status summary: bacteria associated with foodborne diseases. IFT, Chicago, IL. http://www.ift.org/.
15. Islam, D., and A. A. Lindberg. 1992. Detection of Shigella dysenteriae type 1 and Shigella flexneri in feces by immunomagnetic isolation and polymerase chain reaction. J. Clin. Microbiol. 30:2801-2806.
16. Jothikumar, N., and M. W. Griffiths. 2002. Rapid detection of Escherichia coli O157:H7 with multiplex real-time PCR assays. Appl. Environ. Microbiol. 68:3169-3171.
17. Kell, A. J., G. Stewart, S. Ryan, R. Peytavi, M. Boissinot, A. Huletsky, M. G. Bergeron, and B. Simard. 2008. Vancomycin-modified nanoparticles for efficient targeting and preconcentration of Gram-positive and Gram-negative bacteria. ACS Nano. 2:1777-1788.
18. Kim, H. J., S. H. Park, T. H. Lee, B. H. Nahm, Y. R. Kim, and H. Y. Kim. 2008. Microarray detection of food-borne pathogens using specific probes prepared by comparative genomics. Biosens. Bioelectron. 24:238-246.
19. LaGier, M. J., L. A. Joseph, T. V. Passaretti, K. A. Musser, and N. M. Cirino. 2004. A real-time multiplexed PCR assay for rapid detection and differentiation of Campylobacter jejuni and Campylobacter coli. Mol. Cell. Probes 18:275-282.
20. Le Berre, V., E. Trévisiol, A. Dagkessamanskaia, S. Sokol, A. M. Caminade, J. P. Majoral, B. Meunier, and J. François. 2003. Dendrimeric coating of glass slides for sensitive DNA microarrays analysis. Nucleic Acids Res. 31: e88.
21. Lin, F. Y. H., P. M. Sherman, and D. Q. Li. 2004. Development of a novel hand-held immunoassay for the detection of enterhemorrhagic Escherichia coli O157:H7. Biomed. Microdevices 6:125-130.
22. Liu, Y., Q. L. Gao, X. Zhang, Y. M. Hou, J. L. Yang, and X. T. Huang. 2006. PCR and oligonucleotide array for detection of Enterobacter sakazakii in infant formula. Mol. Cell. Probes 20:11-17.
23. Lu, C. Y., C. L. Shi, C. X. Zhang, J. Chen, and X. M. Shi. 2009. Development of single base extension-tags microarray for the detection of food-borne pathogens. Chin. J. Biotechnol. 25:554-559.
24. Lucarelli, F., G. Marrazza, A. P. Turner, and M. Mascini. 2004. Carbon and gold electrodes as electrochemical transducers for DNA hybridization sensors. Biosens. Bioelectron. 19:515-530.
25. Mead, P. S., L. Slutsker, V. Dietz, L. F. McCaig, J. S. Bresee, C. Shapiro, P. M. Griffin, and R. V. Tauxe. 1999. Food-related illness and death in the United States. Emerg. Infect. Dis. 5:607-625.
26. Panicker, G., D. R. Call, M. J. Krug, and A. K. Bej. 2004. Detection of pathogenic Vibrio spp. in shellfish by using multiplex PCR and DNA microarrays. Appl. Environ. Microbiol. 70:7436-7444.
27. Peterson, A. W., R. J. Heaton, and R. M. Georgiadis. 2001. The effect of surface probe density on DNA hybridization. Nucleic Acids Res. 29:5163-6168.
28. Piliarik, M., L. Párová, and J. Homola. 2009. High-throughput SPR sensor for food safety. Biosens. Bioelectron. 24:1399-1404.
29. Radke, V. 2006. The need for partnerships for food safety. J. Environ. Health 69:34-35.
30. Rijpens, N. P., and L. M. F. Herman. 2002. Molecular methods for identi- fication and detection of bacterial food pathogens. J. AOAC Int. 85:984-995.
31. Romanova, N., S. Favrin, and M. W. Griffiths. 2002. Sensitivity of Listeria monocytogenes to sanitizers used in the meat processing industry. Appl. Environ. Microbiol. 68:6405-6409.
32. Rooney, R. M., E. H. Cramer, S. Mantha, G. Nichols, J. K. Bartram, J. M. Farber, and P. K. Benembarek. 2004. A review of outbreaks of foodborne disease associated with passenger ships: evidence for risk management. Public Health Rep. 119:427-434. (Pubitemid 40353149)
33. Schunk, M., T. Jelinek, K. Wetzel, and H. D. Nothdurft. 2001. Detection of Giardia lamblia and Entamoeba histolytica in stool samples by two enzyme immunoassays. Eur. J. Clin. Microbiol. Infect. Dis. 20:389-391.
34. Sheng, H., and B. C. Ye. 2009. Different strategies of covalent attachment of oligonucleotide probe onto glass beads and the hybridization properties. Appl. Biochem. Biotechnol. 152:54-65.
35. Tang, J. N., X. M. Shi, C. L. Shi, and H. C. Chen. 2006. Characterization of a duplex polymerase chain reaction assay for the detection of enterotoxigenic strains of Staphylococcus aureus. J. Rapid Methods Autom. Microbiol. 14: 201-217.
36. Vora, G. J., C. E. Meador, D. A. Stenger, and J. D. Andreadis. 2004. Nucleic acid amplification strategies for DNA microarray-based pathogen detection. Appl. Environ. Microbiol. 70:3047-3054.
37. Wang, L., and P. C. H. Li. 2007. Flexible microarray construction and fast DNA hybridization conducted on a microfluidic chip for greenhouse plant fungal pathogen detection. J. Agric. Food Chem. 55:10509-10516.
38. Wang, R. F., W. W. Cao, and C. E. Cerniglia. 1997. A universal protocol for PCR detection of 13 species of foodborne pathogens in foods. J. Appl. Microbiol. 83:727-736.
39. West, J., M. Becker, S. Tombrink, and A. Manz. 2008. Micro total analysis systems: latest achievements. Anal. Chem. 80:4403-4419.
40. Wolffs, P. F. G., K. Glencross, R. Thibaudeau, and M. W. Griffiths. 2006. Direct quantitation and detection of salmonellae in biological samples without enrichment, using two-step filtration and real-time PCR. Appl. Environ. Microbiol. 72:3896-3900.
41. World Health Organization. 2007. Food safety and foodborne illness. World Health Organization, Geneva, Switzerland. http://www.who.int/mediacentre /factsheets/fs237/en/.
42. World Health Organization. 2008. Initiative to estimate the global burden of foodborne diseases. Foodborne diseases-a growing risk. World Health Organization, Geneva, Switzerland. http://www.who.int/foodsafety/foodborne -disease/ferg/en/.
43. Zhang, D., P. Zuo, and B. C. Ye. 2008. Bead-based mesofluidic system for residue analysis of chloramphenicol. J. Agric. Food Chem. 56:9862-9867.
44. Zhu, D. S., M. Zhou, Y. L. Fan, and X. M. Shi. 2009. Identification of new target sequences for PCR detection of Vibrio parahaemolyticus by genome comparison. J. Rapid Methods Autom. Microbiol. 17:67-69.