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Volumn 4, Issue 10, 2009, Pages 1471-1501

Oligomerized pool engineering (OPEN): An 'open-source' protocol for making customized zinc-finger arrays

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; ZINC FINGER PROTEIN;

EID: 70349146995     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2009.98     Document Type: Article
Times cited : (164)

References (79)
  • 1
    • 45749145124 scopus 로고    scopus 로고
    • Zinc-finger nucleases: The next generation emerges
    • Cathomen, T. & Joung, J.K. Zinc-finger nucleases: The next generation emerges. Mol. Ther. 16, 1200-1207 (2008).
    • (2008) Mol. Ther , vol.16 , pp. 1200-1207
    • Cathomen, T.1    Joung, J.K.2
  • 2
    • 23444441147 scopus 로고    scopus 로고
    • Gene targeting using zinc finger nucleases
    • Porteus, M.H. & Carroll, D. Gene targeting using zinc finger nucleases. Nat. Biotechnol. 23, 967-973 (2005).
    • (2005) Nat. Biotechnol , vol.23 , pp. 967-973
    • Porteus, M.H.1    Carroll, D.2
  • 3
    • 27744530147 scopus 로고    scopus 로고
    • Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells
    • Durai, S. et al. Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells. Nucleic Acids Res. 33, 5978-5990 (2005).
    • (2005) Nucleic Acids Res , vol.33 , pp. 5978-5990
    • Durai, S.1
  • 4
    • 55549129245 scopus 로고    scopus 로고
    • Progress and prospects: Zinc-finger nucleases as gene therapy agents
    • Carroll, D. Progress and prospects: Zinc-finger nucleases as gene therapy agents. Gene Ther. 15, 1463-1468 (2008).
    • (2008) Gene Ther , vol.15 , pp. 1463-1468
    • Carroll, D.1
  • 5
    • 38549136058 scopus 로고    scopus 로고
    • Custom-designed zinc finger nucleases: What is next?
    • Wu, J., Kandavelou, K. & Chandrasegaran, S. Custom-designed zinc finger nucleases: What is next? Cell Mol. Life Sci. 64, 2933-2944 (2007).
    • (2007) Cell Mol. Life Sci , vol.64 , pp. 2933-2944
    • Wu, J.1    Kandavelou, K.2    Chandrasegaran, S.3
  • 6
    • 46749149696 scopus 로고    scopus 로고
    • Critical parameters for genome editing using zinc finger nucleases
    • Camenisch, T.D., Brilliant, M.H. & Segal, D.J. Critical parameters for genome editing using zinc finger nucleases. Mini. Rev. Med. Chem. 8, 669-676 (2008).
    • (2008) Mini. Rev. Med. Chem , vol.8 , pp. 669-676
    • Camenisch, T.D.1    Brilliant, M.H.2    Segal, D.J.3
  • 7
    • 0038947196 scopus 로고    scopus 로고
    • Site-specific cleavage of DNA-RNA hybrids by zinc finger/FokI cleavage domain fusions
    • Kim, Y.G., Shi, Y., Berg, J.M. & Chandrasegaran, S. Site-specific cleavage of DNA-RNA hybrids by zinc finger/FokI cleavage domain fusions. Gene 203, 43-49 (1997).
    • (1997) Gene , vol.203 , pp. 43-49
    • Kim, Y.G.1    Shi, Y.2    Berg, J.M.3    Chandrasegaran, S.4
  • 8
    • 0030032063 scopus 로고    scopus 로고
    • Hybrid restriction enzymes: Zinc finger fusions to Fok I cleavage domain
    • Kim, Y.G., Cha, J. & Chandrasegaran, S. Hybrid restriction enzymes: Zinc finger fusions to Fok I cleavage domain. Proc. Natl. Acad. Sci. USA 93, 1156-1160 (1996).
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 1156-1160
    • Kim, Y.G.1    Cha, J.2    Chandrasegaran, S.3
  • 9
    • 23044460704 scopus 로고    scopus 로고
    • Binding of two zinc finger nuclease monomers to two specific sites is required for effective double-strand DNA cleavage
    • Mani, M., Smith, J., Kandavelou, K., Berg, J.M. & Chandrasegaran, S. Binding of two zinc finger nuclease monomers to two specific sites is required for effective double-strand DNA cleavage. Biochem. Biophys. Res. Commun. 334, 1191-1197 (2005).
    • (2005) Biochem. Biophys. Res. Commun , vol.334 , pp. 1191-1197
    • Mani, M.1    Smith, J.2    Kandavelou, K.3    Berg, J.M.4    Chandrasegaran, S.5
  • 10
    • 0034283804 scopus 로고    scopus 로고
    • Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains
    • Smith, J. et al. Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains. Nucleic Acids Res. 28, 3361-3369 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 3361-3369
    • Smith, J.1
  • 11
    • 47349097567 scopus 로고    scopus 로고
    • Rapid 'open-source' engineering of customized zinc-finger nucleases for highly efficient gene modification
    • Maeder, M.L. et al. Rapid 'open-source' engineering of customized zinc-finger nucleases for highly efficient gene modification. Mol. Cell. 31, 294-301 (2008).
    • (2008) Mol. Cell , vol.31 , pp. 294-301
    • Maeder, M.L.1
  • 12
    • 0037510038 scopus 로고    scopus 로고
    • Enhancing gene targeting with designed zinc finger nucleases
    • Bibikova, M., Beumer, K., Trautman, J.K. & Carroll, D. Enhancing gene targeting with designed zinc finger nucleases. Science 300, 764 (2003).
    • (2003) Science , vol.300 , pp. 764
    • Bibikova, M.1    Beumer, K.2    Trautman, J.K.3    Carroll, D.4
  • 13
    • 0036021389 scopus 로고    scopus 로고
    • Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases
    • Bibikova, M., Golic, M., Golic, K.G. & Carroll, D. Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases. Genetics 161, 1169-1175 (2002).
    • (2002) Genetics , vol.161 , pp. 1169-1175
    • Bibikova, M.1    Golic, M.2    Golic, K.G.3    Carroll, D.4
  • 14
    • 44449120801 scopus 로고    scopus 로고
    • Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases
    • Santiago, Y. et al. Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases. Proc. Natl. Acad. Sci. USA 105, 5809-5814 (2008).
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 5809-5814
    • Santiago, Y.1
  • 15
    • 34447319080 scopus 로고    scopus 로고
    • An improved zinc-finger nuclease architecture for highly specific genome editing
    • Miller, J.C. et al. An improved zinc-finger nuclease architecture for highly specific genome editing. Nat. Biotechnol. 25, 778-785 (2007).
    • (2007) Nat. Biotechnol , vol.25 , pp. 778-785
    • Miller, J.C.1
  • 16
    • 35948946526 scopus 로고    scopus 로고
    • Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery
    • Lombardo, A. et al. Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery. Nat. Biotechnol. 25, 1298-1306 (2007).
    • (2007) Nat. Biotechnol , vol.25 , pp. 1298-1306
    • Lombardo, A.1
  • 17
    • 46949095221 scopus 로고    scopus 로고
    • Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleases
    • Perez, E.E. et al. Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleases. Nat. Biotechnol. 26, 808-816 (2008).
    • (2008) Nat. Biotechnol , vol.26 , pp. 808-816
    • Perez, E.E.1
  • 18
    • 44949155482 scopus 로고    scopus 로고
    • Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases
    • Doyon, Y. et al. Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases. Nat. Biotechnol. 26, 702-708 (2008).
    • (2008) Nat. Biotechnol , vol.26 , pp. 702-708
    • Doyon, Y.1
  • 19
    • 44949162060 scopus 로고    scopus 로고
    • Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases
    • Meng, X., Noyes, M.B., Zhu, L.J., Lawson, N.D. & Wolfe, S.A. Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases. Nat. Biotechnol. 26, 695-701 (2008).
    • (2008) Nat. Biotechnol , vol.26 , pp. 695-701
    • Meng, X.1    Noyes, M.B.2    Zhu, L.J.3    Lawson, N.D.4    Wolfe, S.A.5
  • 20
    • 84861409753 scopus 로고    scopus 로고
    • Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by oligomerized pool engineering
    • Foley, J.E. et al. Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by oligomerized pool engineering. PLoS ONE 4, e4348 (2009).
    • (2009) PLoS ONE , vol.4
    • Foley, J.E.1
  • 22
    • 33644693285 scopus 로고    scopus 로고
    • High-frequency homologous recombination in plants mediated by zinc-finger nucleases
    • Wright, D.A. et al. High-frequency homologous recombination in plants mediated by zinc-finger nucleases. Plant J. 44, 693-705 (2005).
    • (2005) Plant J , vol.44 , pp. 693-705
    • Wright, D.A.1
  • 23
    • 0038523969 scopus 로고    scopus 로고
    • Chimeric nucleases stimulate gene targeting in human cells
    • Porteus, M.H. & Baltimore, D. Chimeric nucleases stimulate gene targeting in human cells. Science 300, 763 (2003).
    • (2003) Science , vol.300 , pp. 763
    • Porteus, M.H.1    Baltimore, D.2
  • 24
    • 33847682924 scopus 로고    scopus 로고
    • Targeted gene addition into a specified location in the human genome using designed zinc finger nucleases
    • Moehle, E.A. et al. Targeted gene addition into a specified location in the human genome using designed zinc finger nucleases. Proc. Natl. Acad. Sci. USA 104, 3055-3060 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 3055-3060
    • Moehle, E.A.1
  • 25
    • 18944373328 scopus 로고    scopus 로고
    • Highly efficient endogenous human gene correction using designed zinc-finger nucleases
    • Urnov, F.D. et al. Highly efficient endogenous human gene correction using designed zinc-finger nucleases. Nature 435, 646-651 (2005).
    • (2005) Nature , vol.435 , pp. 646-651
    • Urnov, F.D.1
  • 26
  • 27
    • 58149374562 scopus 로고    scopus 로고
    • Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases
    • Beumer, K.J. et al. Efficient gene targeting in Drosophila by direct embryo injection with zinc-finger nucleases. Proc. Natl. Acad. Sci. USA 105, 19821-19826 (2008).
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 19821-19826
    • Beumer, K.J.1
  • 28
    • 33750804666 scopus 로고    scopus 로고
    • Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cells
    • Morton, J., Davis, M.W., Jorgensen, E.M. & Carroll, D. Induction and repair of zinc-finger nuclease-targeted double-strand breaks in Caenorhabditis elegans somatic cells. Proc. Natl. Acad. Sci. USA 103, 16370-16375 (2006).
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 16370-16375
    • Morton, J.1    Davis, M.W.2    Jorgensen, E.M.3    Carroll, D.4
  • 29
    • 61649085865 scopus 로고    scopus 로고
    • Targeted transgene integration in plant cells using designed zinc finger nucleases
    • Cai, C.Q. et al. Targeted transgene integration in plant cells using designed zinc finger nucleases. Plant. Mol. Biol. 69, 699-709 (2009).
    • (2009) Plant. Mol. Biol , vol.69 , pp. 699-709
    • Cai, C.Q.1
  • 30
    • 66249093890 scopus 로고    scopus 로고
    • High frequency modification of plant genes using engineered zinc finger nucleases
    • Townsend, J.A. et al. High frequency modification of plant genes using engineered zinc finger nucleases. Nature 459, 442-445 (2009).
    • (2009) Nature , vol.459 , pp. 442-445
    • Townsend, J.A.1
  • 31
    • 0142091373 scopus 로고    scopus 로고
    • Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection
    • Hurt, J.A., Thibodeau, S.A., Hirsh, A.S., Pabo, C.O. & Joung, J.K. Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection. Proc. Natl. Acad. Sci. USA 100, 12271-12276 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 12271-12276
    • Hurt, J.A.1    Thibodeau, S.A.2    Hirsh, A.S.3    Pabo, C.O.4    Joung, J.K.5
  • 32
    • 38849103093 scopus 로고    scopus 로고
    • DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases
    • Cornu, T.I. et al. DNA-binding specificity is a major determinant of the activity and toxicity of zinc-finger nucleases. Mol. Ther. 16, 352-358 (2008).
    • (2008) Mol. Ther , vol.16 , pp. 352-358
    • Cornu, T.I.1
  • 33
    • 41149127259 scopus 로고    scopus 로고
    • Comparison of zinc finger nucleases for use in gene targeting in mammalian cells
    • Pruett-Miller, S.M., Connelly, J.P., Maeder, M.L., Joung, J.K. & Porteus, M.H. Comparison of zinc finger nucleases for use in gene targeting in mammalian cells. Mol. Ther. 16, 707-717 (2008).
    • (2008) Mol. Ther , vol.16 , pp. 707-717
    • Pruett-Miller, S.M.1    Connelly, J.P.2    Maeder, M.L.3    Joung, J.K.4    Porteus, M.H.5
  • 34
    • 58149187901 scopus 로고    scopus 로고
    • Zinc Finger Database (ZiFDB): A repository for information on C2H2 zinc fingers and engineered zinc-finger arrays
    • Fu, F. et al. Zinc Finger Database (ZiFDB): A repository for information on C2H2 zinc fingers and engineered zinc-finger arrays. Nucleic Acids Res. 37, D279-D283 (2009).
    • (2009) Nucleic Acids Res , vol.37
    • Fu, F.1
  • 35
    • 34547605763 scopus 로고    scopus 로고
    • Zinc finger targeter (ZiFiT): An engineered zinc finger/target site design tool
    • Sander, J.D., Zaback, P., Joung, J.K., Voytas, D.F. & Dobbs, D. Zinc finger targeter (ZiFiT): An engineered zinc finger/target site design tool. Nucleic Acids Res. 35, W599-W605 (2007).
    • (2007) Nucleic Acids Res , vol.35
    • Sander, J.D.1    Zaback, P.2    Joung, J.K.3    Voytas, D.F.4    Dobbs, D.5
  • 36
    • 30344473645 scopus 로고    scopus 로고
    • Mammalian gene targeting with designed zinc finger nucleases
    • Porteus, M.H. Mammalian gene targeting with designed zinc finger nucleases. Mol. Ther. 13, 438-446 (2006).
    • (2006) Mol. Ther , vol.13 , pp. 438-446
    • Porteus, M.H.1
  • 37
    • 25144501447 scopus 로고    scopus 로고
    • Custom zinc-finger nucleases for use in human cells
    • Alwin, S. et al. Custom zinc-finger nucleases for use in human cells. Mol. Ther. 12, 610-617 (2005).
    • (2005) Mol. Ther , vol.12 , pp. 610-617
    • Alwin, S.1
  • 39
    • 0344839044 scopus 로고    scopus 로고
    • Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins
    • Segal, D.J. et al. Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins. Biochemistry 42, 2137-2148 (2003).
    • (2003) Biochemistry , vol.42 , pp. 2137-2148
    • Segal, D.J.1
  • 40
    • 0036024956 scopus 로고    scopus 로고
    • The use of zinc finger peptides to study the role of specific factor binding sites in the chromatin environment
    • Segal, D.J. The use of zinc finger peptides to study the role of specific factor binding sites in the chromatin environment. Methods 26, 76-83 (2002).
    • (2002) Methods , vol.26 , pp. 76-83
    • Segal, D.J.1
  • 41
    • 0035712253 scopus 로고    scopus 로고
    • Custom DNA-binding proteins come of age: Polydactyl zinc-finger proteins
    • Segal, D.J. & Barbas, C.F. III. Custom DNA-binding proteins come of age: polydactyl zinc-finger proteins. Curr. Opin. Biotechnol. 12, 632-637 (2001).
    • (2001) Curr. Opin. Biotechnol , vol.12 , pp. 632-637
    • Segal, D.J.1    Barbas III, C.F.2
  • 42
    • 33747816812 scopus 로고    scopus 로고
    • Zinc finger tools: Custom DNA-binding domains for transcription factors and nucleases
    • Mandell, J.G. & Barbas, C.F. III. Zinc finger tools: Custom DNA-binding domains for transcription factors and nucleases. Nucleic Acids Res. 34, W516-W523 (2006).
    • (2006) Nucleic Acids Res , vol.34
    • Mandell, J.G.1    Barbas III, C.F.2
  • 43
    • 0036168937 scopus 로고    scopus 로고
    • Engineering polydactyl zinc-finger transcription factors
    • Beerli, R.R. & Barbas, C.F. III. Engineering polydactyl zinc-finger transcription factors. Nat. Biotechnol. 20, 135-141 (2002).
    • (2002) Nat. Biotechnol , vol.20 , pp. 135-141
    • Beerli, R.R.1    Barbas III, C.F.2
  • 44
    • 0037335514 scopus 로고    scopus 로고
    • Human zinc fingers as building blocks in the construction of artificial transcription factors
    • Bae, K.H. et al. Human zinc fingers as building blocks in the construction of artificial transcription factors. Nat. Biotechnol. 21, 275-280 (2003).
    • (2003) Nat. Biotechnol , vol.21 , pp. 275-280
    • Bae, K.H.1
  • 45
    • 0037040240 scopus 로고    scopus 로고
    • Validated zinc finger protein designs for all 16 GNN DNA triplet targets
    • Liu, Q., Xia, Z., Zhong, X. & Case, C.C. Validated zinc finger protein designs for all 16 GNN DNA triplet targets. J. Biol. Chem. 277 3850-3856 (2002).
    • (2002) J. Biol. Chem , vol.277 , pp. 3850-3856
    • Liu, Q.1    Xia, Z.2    Zhong, X.3    Case, C.C.4
  • 46
    • 42949083192 scopus 로고    scopus 로고
    • Unexpected failure rates for modular assembly of engineered zinc-fingers
    • Ramirez, C.L. et al. Unexpected failure rates for modular assembly of engineered zinc-fingers. Nat. Methods 5, 374-375 (2008).
    • (2008) Nat. Methods , vol.5 , pp. 374-375
    • Ramirez, C.L.1
  • 47
    • 0034890853 scopus 로고    scopus 로고
    • Beyond the 'recognition code': Structures of two Cys2His2 zinc finger/TATA box complexes
    • Wolfe, S.A., Grant, R.A., Elrod-Erickson, M. & Pabo, C.O. Beyond the 'recognition code': Structures of two Cys2His2 zinc finger/TATA box complexes. Structure 9, 717-723 (2001).
    • (2001) Structure , vol.9 , pp. 717-723
    • Wolfe, S.A.1    Grant, R.A.2    Elrod-Erickson, M.3    Pabo, C.O.4
  • 48
    • 0033524954 scopus 로고    scopus 로고
    • Analysis of zinc fingers optimized via phage display: Evaluating the utility of a recognition code
    • Wolfe, S.A., Greisman, H.A., Ramm, E.I. & Pabo, C.O. Analysis of zinc fingers optimized via phage display: Evaluating the utility of a recognition code. J. Mol. Biol. 285, 1917-1934 (1999).
    • (1999) J. Mol. Biol , vol.285 , pp. 1917-1934
    • Wolfe, S.A.1    Greisman, H.A.2    Ramm, E.I.3    Pabo, C.O.4
  • 49
    • 0030587774 scopus 로고    scopus 로고
    • Zif268 protein-DNA complex refined at 1.6 A: A model system for understanding zinc finger-DNA interactions
    • Elrod-Erickson, M., Rould, M.A., Nekludova, L. & Pabo, C.O. Zif268 protein-DNA complex refined at 1.6 A: A model system for understanding zinc finger-DNA interactions. Structure 4, 1171-1180 (1996).
    • (1996) Structure , vol.4 , pp. 1171-1180
    • Elrod-Erickson, M.1    Rould, M.A.2    Nekludova, L.3    Pabo, C.O.4
  • 50
    • 0032168890 scopus 로고    scopus 로고
    • Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers
    • Isalan, M., Klug, A. & Choo, Y. Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers. Biochemistry 37, 12026-12033 (1998).
    • (1998) Biochemistry , vol.37 , pp. 12026-12033
    • Isalan, M.1    Klug, A.2    Choo, Y.3
  • 51
    • 0030940295 scopus 로고    scopus 로고
    • Synergy between adjacent zinc fingers in sequence-specific DNA recognition
    • Isalan, M., Choo, Y. & Klug, A. Synergy between adjacent zinc fingers in sequence-specific DNA recognition. Proc. Natl. Acad. Sci. USA 94, 5617-5621 (1997).
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 5617-5621
    • Isalan, M.1    Choo, Y.2    Klug, A.3
  • 52
    • 51649084498 scopus 로고    scopus 로고
    • The fate of fingers
    • Pearson, H. The fate of fingers. Nature 455, 160-164 (2008).
    • (2008) Nature , vol.455 , pp. 160-164
    • Pearson, H.1
  • 53
    • 0142027810 scopus 로고    scopus 로고
    • Zinc-finger protein-targeted gene regulation: Genomewide single-gene specificity
    • Tan, S. et al. Zinc-finger protein-targeted gene regulation: genomewide single-gene specificity. Proc. Natl. Acad. Sci. USA 100, 11997-12002 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 11997-12002
    • Tan, S.1
  • 54
    • 23844471938 scopus 로고    scopus 로고
    • Genetic reprogramming of tumor cells by zinc finger transcription factors
    • Blancafort, P. et al. Genetic reprogramming of tumor cells by zinc finger transcription factors. Proc. Natl. Acad. Sci. USA 102 11716-11721 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 11716-11721
    • Blancafort, P.1
  • 55
    • 0037338381 scopus 로고    scopus 로고
    • Scanning the human genome with combinatorial transcription factor libraries
    • Blancafort, P., Magnenat, L. & Barbas, C.F. Scanning the human genome with combinatorial transcription factor libraries. Nat. Biotechnol. 21, 269-274 (2003).
    • (2003) Nat. Biotechnol , vol.21 , pp. 269-274
    • Blancafort, P.1    Magnenat, L.2    Barbas, C.F.3
  • 56
    • 0347296233 scopus 로고    scopus 로고
    • Controlling gene expression in plants using synthetic zinc finger transcription factors
    • Stege, J.T., Guan, X., Ho, T., Beachy, R.N. & Barbas, C.F. III. Controlling gene expression in plants using synthetic zinc finger transcription factors. Plant J. 32, 1077-1086 (2002).
    • (2002) Plant J , vol.32 , pp. 1077-1086
    • Stege, J.T.1    Guan, X.2    Ho, T.3    Beachy, R.N.4    Barbas III, C.F.5
  • 57
    • 0036792098 scopus 로고    scopus 로고
    • Regulation of transgene expression in plants with polydactyl zinc finger transcription factors
    • Ordiz, M.I., Barbas, C.F. III. & Beachy, R.N. Regulation of transgene expression in plants with polydactyl zinc finger transcription factors. Proc. Natl. Acad. Sci. USA 99, 13290-13295 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 13290-13295
    • Ordiz, M.I.1    Barbas III, C.F.2    Beachy, R.N.3
  • 58
    • 0036792099 scopus 로고    scopus 로고
    • Heritable endogenous gene regulation in plants with designed polydactyl zinc finger transcription factors
    • Guan, X. et al. Heritable endogenous gene regulation in plants with designed polydactyl zinc finger transcription factors. Proc. Natl. Acad. Sci. USA 99, 13296-13301 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 13296-13301
    • Guan, X.1
  • 59
    • 0034652141 scopus 로고    scopus 로고
    • Positive and negative regulation of endogenous genes by designed transcription factors
    • Beerli, R.R., Dreier, B. & Barbas, C.F. III. Positive and negative regulation of endogenous genes by designed transcription factors. Proc. Natl. Acad. Sci. USA 97, 1495-1500 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1495-1500
    • Beerli, R.R.1    Dreier, B.2    Barbas III, C.F.3
  • 60
    • 0032437591 scopus 로고    scopus 로고
    • Toward controlling gene expression at will: Specific regulation of the erbB-2/ HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks
    • Beerli, R.R., Segal, D.J., Dreier, B. & Barbas, C.F. III. Toward controlling gene expression at will: Specific regulation of the erbB-2/ HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks. Proc. Natl. Acad. Sci. USA 95, 14628-14633 (1998).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14628-14633
    • Beerli, R.R.1    Segal, D.J.2    Dreier, B.3    Barbas III, C.F.4
  • 62
    • 41649119943 scopus 로고    scopus 로고
    • Modulation of drug resistance by artificial transcription factors
    • Blancafort, P. et al. Modulation of drug resistance by artificial transcription factors. Mol. Cancer Ther. 7, 688-697 (2008).
    • (2008) Mol. Cancer Ther , vol.7 , pp. 688-697
    • Blancafort, P.1
  • 63
    • 34548395961 scopus 로고    scopus 로고
    • In vivo site-specific DNA methylation with a designed sequence-enabled DNA methylase
    • Nomura, W. & Barbas, C.F. III. In vivo site-specific DNA methylation with a designed sequence-enabled DNA methylase. J. Am. Chem. Soc. 129, 8676-8677 (2007).
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 8676-8677
    • Nomura, W.1    Barbas III, C.F.2
  • 64
    • 33847363901 scopus 로고    scopus 로고
    • Evolution of programmable zinc finger-recombinases with activity in human cells
    • Gordley, R.M., Smith, J.D., Graslund, T. & Barbas, C.F. III. Evolution of programmable zinc finger-recombinases with activity in human cells. J. Mol. Biol. 367, 802-813 (2007).
    • (2007) J. Mol. Biol , vol.367 , pp. 802-813
    • Gordley, R.M.1    Smith, J.D.2    Graslund, T.3    Barbas III, C.F.4
  • 65
    • 33644774584 scopus 로고    scopus 로고
    • Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site
    • Eberhardy, S.R. et al. Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site. J. Virol. 80, 2873-2883 (2006).
    • (2006) J. Virol , vol.80 , pp. 2873-2883
    • Eberhardy, S.R.1
  • 66
    • 32444434997 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 incorporated with fusion proteins consisting of integrase and the designed polydactyl zinc finger protein E2C can bias integration of viral DNA into a predetermined chromosomal region in human cells
    • Tan, W., Dong, Z., Wilkinson, T.A., Barbas, C.F. III. & Chow, S.A. Human immunodeficiency virus type 1 incorporated with fusion proteins consisting of integrase and the designed polydactyl zinc finger protein E2C can bias integration of viral DNA into a predetermined chromosomal region in human cells. J. Virol. 80, 1939-1948 (2006).
    • (2006) J. Virol , vol.80 , pp. 1939-1948
    • Tan, W.1    Dong, Z.2    Wilkinson, T.A.3    Barbas III, C.F.4    Chow, S.A.5
  • 67
    • 0036912846 scopus 로고    scopus 로고
    • Induction of angiogenesis in a mouse model using engineered transcription factors
    • Rebar, E.J. et al. Induction of angiogenesis in a mouse model using engineered transcription factors. Nat. Med. 8, 1427-1432 (2002).
    • (2002) Nat. Med , vol.8 , pp. 1427-1432
    • Rebar, E.J.1
  • 68
    • 0037205439 scopus 로고    scopus 로고
    • Activation of vascular endothelial growth factor A transcription in tumorigenic glioblastoma cell lines by an enhancer with cell type-specific DNase I accessibility
    • Liang, Y. et al. Activation of vascular endothelial growth factor A transcription in tumorigenic glioblastoma cell lines by an enhancer with cell type-specific DNase I accessibility. J. Biol. Chem. 277, 20087-20094 (2002).
    • (2002) J. Biol. Chem , vol.277 , pp. 20087-20094
    • Liang, Y.1
  • 69
    • 0035815697 scopus 로고    scopus 로고
    • Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A
    • Liu, P.Q. et al. Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A. J. Biol. Chem. 276, 11323-11334 (2001).
    • (2001) J. Biol. Chem , vol.276 , pp. 11323-11334
    • Liu, P.Q.1
  • 70
    • 0034721877 scopus 로고    scopus 로고
    • Synthetic zinc finger transcription factor action at an endogenous chromosomal site. Activation of the human erythropoietin gene
    • Zhang, L. et al. Synthetic zinc finger transcription factor action at an endogenous chromosomal site. Activation of the human erythropoietin gene. J. Biol. Chem. 275, 33850-33860 (2000).
    • (2000) J. Biol. Chem , vol.275 , pp. 33850-33860
    • Zhang, L.1
  • 71
    • 58149265244 scopus 로고    scopus 로고
    • Expanding or restricting the target site repertoire of zinc-finger nucleases: The inter-domain linker as a major determinant of target site selectivity
    • Handel, E.M., Alwin, S. & Cathomen, T. Expanding or restricting the target site repertoire of zinc-finger nucleases: The inter-domain linker as a major determinant of target site selectivity. Mol. Ther. 17, 104-111 (2009).
    • (2009) Mol. Ther , vol.17 , pp. 104-111
    • Handel, E.M.1    Alwin, S.2    Cathomen, T.3
  • 72
    • 0034749283 scopus 로고    scopus 로고
    • Stimulation of homologous recombination through targeted cleavage by chimeric nucleases
    • Bibikova, M. et al. Stimulation of homologous recombination through targeted cleavage by chimeric nucleases. Mol. Cell. Biol. 21, 289-297 (2001).
    • (2001) Mol. Cell. Biol , vol.21 , pp. 289-297
    • Bibikova, M.1
  • 73
    • 0034691202 scopus 로고    scopus 로고
    • A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions
    • Joung, J.K., Ramm, E.I. & Pabo, C.O. A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions. Proc. Natl. Acad. Sci. USA 97, 7382-7387 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 7382-7387
    • Joung, J.K.1    Ramm, E.I.2    Pabo, C.O.3
  • 74
    • 0032529668 scopus 로고    scopus 로고
    • Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli
    • Whipple, F.W. Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli. Nucleic Acids Res. 26, 3700-3706 (1998).
    • (1998) Nucleic Acids Res , vol.26 , pp. 3700-3706
    • Whipple, F.W.1
  • 75
    • 41449109620 scopus 로고    scopus 로고
    • Engineering cys2his2 zinc finger domains using a bacterial cell-based two-hybrid selection system
    • Thibodeau-Beganny, S. & Joung, J.K. Engineering cys2his2 zinc finger domains using a bacterial cell-based two-hybrid selection system. Methods Mol. Biol. 408, 317-334 (2007).
    • (2007) Methods Mol. Biol , vol.408 , pp. 317-334
    • Thibodeau-Beganny, S.1    Joung, J.K.2
  • 76
    • 34248220864 scopus 로고    scopus 로고
    • Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly
    • Wright, D.A. et al. Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly. Nat. Protoc. 1, 1637-1652 (2006).
    • (2006) Nat. Protoc , vol.1 , pp. 1637-1652
    • Wright, D.A.1
  • 77
    • 34447323568 scopus 로고    scopus 로고
    • Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
    • Szczepek, M. et al. Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases. Nat. Biotechnol. 25, 786-793 (2007).
    • (2007) Nat. Biotechnol , vol.25 , pp. 786-793
    • Szczepek, M.1
  • 78
    • 66249147273 scopus 로고    scopus 로고
    • Precise genome modification in the crop species Zea mays using zinc-finger nucleases
    • Shukla, V.K. et al. Precise genome modification in the crop species Zea mays using zinc-finger nucleases. Nature 459, 437-441 (2009).
    • (2009) Nature , vol.459 , pp. 437-441
    • Shukla, V.K.1
  • 79
    • 1542346163 scopus 로고    scopus 로고
    • High-throughput beta-galactosidase assay for bacterial cell-based reporter systems
    • Thibodeau, S.A., Fang, R. & Joung, J.K. High-throughput beta-galactosidase assay for bacterial cell-based reporter systems. Biotechniques 36, 410-415 (2004).
    • (2004) Biotechniques , vol.36 , pp. 410-415
    • Thibodeau, S.A.1    Fang, R.2    Joung, J.K.3


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