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Volumn 16, Issue 4, 2008, Pages 707-717

Comparison of zinc finger nucleases for use in gene targeting in Mammalian Cells

Author keywords

[No Author keywords available]

Indexed keywords

CHECKPOINT KINASE 2; DOUBLE STRANDED DNA; GREEN FLUORESCENT PROTEIN; HYBRID PROTEIN; NUCLEASE; UNCLASSIFIED DRUG; ZINC FINGER NUCLEASE;

EID: 41149127259     PISSN: 15250016     EISSN: 15250024     Source Type: Journal    
DOI: 10.1038/mt.2008.20     Document Type: Article
Times cited : (100)

References (50)
  • 1
    • 3242886313 scopus 로고    scopus 로고
    • Homologous recombination-mediated double-strand break repair
    • Wyman, C, Ristic, D and Kanaar, R (2004). Homologous recombination-mediated double-strand break repair. DNA Repair(Amst 3: 827-833.
    • (2004) DNA Repair(Amst , vol.3 , pp. 827-833
    • Wyman, C.1    Ristic, D.2    Kanaar, R.3
  • 2
    • 19544371373 scopus 로고    scopus 로고
    • Gene targeting in mice: Functional analysis of the mammalian genome for the twenty-first century
    • Capecchi, MR (2005). Gene targeting in mice: Functional analysis of the mammalian genome for the twenty-first century. Nat Rev Genet 6 507-512.
    • (2005) Nat Rev Genet , vol.6 , pp. 507-512
    • Capecchi, M.R.1
  • 3
    • 0000277434 scopus 로고
    • Yeast transformation: A model system for the study of recombination
    • Orr-Weaver, TL, Szostak, JW and Rothstein, RJ (1981). Yeast transformation: A model system for the study of recombination. Proc Natl Acad Sci USA 78: 6354-6358.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 6354-6358
    • Orr-Weaver, T.L.1    Szostak, J.W.2    Rothstein, R.J.3
  • 4
    • 0038523969 scopus 로고    scopus 로고
    • Chimeric nucleases stimulate gene targeting in human cells
    • Porteus, MH and Baltimore, D (2003). Chimeric nucleases stimulate gene targeting in human cells. Science 300: 763.
    • (2003) Science , vol.300 , pp. 763
    • Porteus, M.H.1    Baltimore, D.2
  • 5
    • 3242886111 scopus 로고    scopus 로고
    • Reverse genetic studies of the DNA damage response in the chicken B lymphocyte line DT40
    • Yamazoe, M, Sonoda, E, Hochegger, H and Takeda, S (2004). Reverse genetic studies of the DNA damage response in the chicken B lymphocyte line DT40. DNA Repair (Amst) 3: 1175-1185.
    • (2004) DNA Repair (Amst) , vol.3 , pp. 1175-1185
    • Yamazoe, M.1    Sonoda, E.2    Hochegger, H.3    Takeda, S.4
  • 6
    • 0033997905 scopus 로고    scopus 로고
    • Design and packaging of adeno-associated virus gene targeting vectors
    • Hirata, RK and Russell, DW (2000). Design and packaging of adeno-associated virus gene targeting vectors. J Virol 74: 4612-4620.
    • (2000) J Virol , vol.74 , pp. 4612-4620
    • Hirata, R.K.1    Russell, D.W.2
  • 7
    • 0029867485 scopus 로고    scopus 로고
    • Stimulation of intrachromosomal homologous recombination in human cells by electroporation with site-specific endonucleases
    • Brenneman, M, Gimble, FS and Wilson, JH (1996). Stimulation of intrachromosomal homologous recombination in human cells by electroporation with site-specific endonucleases. Proc Natl Acad Sci USA 93: 3608-3612.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 3608-3612
    • Brenneman, M.1    Gimble, F.S.2    Wilson, J.H.3
  • 8
    • 0028919608 scopus 로고
    • Induction of homologous recombination in mammalian chromosomes by using the I-Scel system of Saccharomyces cerevisiae
    • Choulika, A, Perrin, A, Dujon, B and Nicolas, JF (1995). Induction of homologous recombination in mammalian chromosomes by using the I-Scel system of Saccharomyces cerevisiae. Mol Cell Biol 15: 1968-1973.
    • (1995) Mol Cell Biol , vol.15 , pp. 1968-1973
    • Choulika, A.1    Perrin, A.2    Dujon, B.3    Nicolas, J.F.4
  • 9
    • 0031032549 scopus 로고    scopus 로고
    • Repair of site-specific double-strand breaks in a mammalian chromosome by homologous and illegitimate recombination
    • Sargent, RG, Brenneman, MA and Wilson, JH (1997). Repair of site-specific double-strand breaks in a mammalian chromosome by homologous and illegitimate recombination. Mol Cell Biol 17: 267-277.
    • (1997) Mol Cell Biol , vol.17 , pp. 267-277
    • Sargent, R.G.1    Brenneman, M.A.2    Wilson, J.H.3
  • 10
    • 0029598505 scopus 로고
    • Double-strand breaks at the target locus stimulate gene targeting in embryonic stem cells
    • Smih, F, Rouet, P, Romanienko, PJ, and Jasin, M (1995). Double-strand breaks at the target locus stimulate gene targeting in embryonic stem cells. Nucleic Acids Res 23: 5012-5019.
    • (1995) Nucleic Acids Res , vol.23 , pp. 5012-5019
    • Smih, F.1    Rouet, P.2    Romanienko, P.J.3    Jasin, M.4
  • 11
    • 0030812487 scopus 로고    scopus 로고
    • Homing endonucleases: Keeping the house in order
    • Belfort, M and Roberts, RJ (1997). Homing endonucleases: Keeping the house in order. Nucleic Acids Res 25: 3379-3388.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3379-3388
    • Belfort, M.1    Roberts, R.J.2
  • 12
    • 33644756595 scopus 로고    scopus 로고
    • Homing endonuclease structure and function
    • Stoddard, BL (2005). Homing endonuclease structure and function. Q Rev Biophys 38: 49-95.
    • (2005) Q Rev Biophys , vol.38 , pp. 49-95
    • Stoddard, B.L.1
  • 13
    • 27744530147 scopus 로고    scopus 로고
    • Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells
    • Durai, S, Mani, M, Kandavelou, K, Wu, J, Porteus, MH and Chandrasegaran, S (2005). Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells. Nucleic Acids Res 33: 5978-5990.
    • (2005) Nucleic Acids Res , vol.33 , pp. 5978-5990
    • Durai, S.1    Mani, M.2    Kandavelou, K.3    Wu, J.4    Porteus, M.H.5    Chandrasegaran, S.6
  • 14
    • 23444441147 scopus 로고    scopus 로고
    • Gene targeting using zinc finger nucleases
    • Porteus, MH and Carroll, D (2005). Gene targeting using zinc finger nucleases. Nat Biotechnol 23: 967-973.
    • (2005) Nat Biotechnol , vol.23 , pp. 967-973
    • Porteus, M.H.1    Carroll, D.2
  • 15
    • 0032876974 scopus 로고    scopus 로고
    • Chimeric restriction enzymes: What is next?
    • Chandrasegaran, S and Smith, J (1999). Chimeric restriction enzymes: what is next? Biol Chem 380: 841-848.
    • (1999) Biol Chem , vol.380 , pp. 841-848
    • Chandrasegaran, S.1    Smith, J.2
  • 17
    • 0034283804 scopus 로고    scopus 로고
    • Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains
    • Smith, J, Bibikova, M, Whitby, FG, Reddy, AR, Chandrasegaran, S and Carroll, D (2000). Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains. Nucleic Acids Res 28: 3361-3369.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3361-3369
    • Smith, J.1    Bibikova, M.2    Whitby, F.G.3    Reddy, A.R.4    Chandrasegaran, S.5    Carroll, D.6
  • 18
    • 0037510038 scopus 로고    scopus 로고
    • Enhancing gene targeting with designed zinc finger nucleases
    • Bibikova, M, Beumer, K, Trautman, JK and Carroll, D (2003). Enhancing gene targeting with designed zinc finger nucleases. Science 300 764.
    • (2003) Science , vol.300 , pp. 764
    • Bibikova, M.1    Beumer, K.2    Trautman, J.K.3    Carroll, D.4
  • 19
    • 0034749283 scopus 로고    scopus 로고
    • Stimulation of homologous recombination through targeted cleavage by chimeric nucleases
    • Bibikova, M, Carroll, D, Segal, DJ, Trautman, JK, Smith, J, Kim, YG et al. (2001). Stimulation of homologous recombination through targeted cleavage by chimeric nucleases. Mol Cell Biol 21: 289-297.
    • (2001) Mol Cell Biol , vol.21 , pp. 289-297
    • Bibikova, M.1    Carroll, D.2    Segal, D.J.3    Trautman, J.K.4    Smith, J.5    Kim, Y.G.6
  • 20
    • 13844319542 scopus 로고    scopus 로고
    • Targeted mutagenesis using zinc-finger nucleases in Arabidopsis
    • Lloyd, A, Plaisier, CL, Carroll, D and Drews, GN (2005). Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. Proc Natl Acad Sci USA 102: 2232-2237.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 2232-2237
    • Lloyd, A.1    Plaisier, C.L.2    Carroll, D.3    Drews, G.N.4
  • 21
    • 18944373328 scopus 로고    scopus 로고
    • Highly efficient endogenous human gene correction using designed zinc-finger nucleases
    • Umov, FD, Miller, JC, Lee, YL, Beausejour, CM, Rock, JM, Augustus, S et al. (2005). Highly efficient endogenous human gene correction using designed zinc-finger nucleases. Nature 435: 646-651.
    • (2005) Nature , vol.435 , pp. 646-651
    • Umov, F.D.1    Miller, J.C.2    Lee, Y.L.3    Beausejour, C.M.4    Rock, J.M.5    Augustus, S.6
  • 22
    • 0033516667 scopus 로고    scopus 로고
    • Binding studies with mutants of Zif268. Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex
    • Elrod-Erickson, M and Pabo, CO (1999). Binding studies with mutants of Zif268. Contribution of individual side chains to binding affinity and specificity in the Zif268 zinc finger-DNA complex. J Biol Chem 274: 19281-19285.
    • (1999) J Biol Chem , vol.274 , pp. 19281-19285
    • Elrod-Erickson, M.1    Pabo, C.O.2
  • 23
    • 0025773296 scopus 로고
    • Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 A
    • Pavletich, NP and Patio, CO (1991). Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 A. Science 252: 809-817.
    • (1991) Science , vol.252 , pp. 809-817
    • Pavletich, N.P.1    Patio, C.O.2
  • 24
    • 0029240283 scopus 로고
    • A direct comparison of the properties of natural and designed zinc-finger proteins
    • Shi, Y and Berg, JM (1995). A direct comparison of the properties of natural and designed zinc-finger proteins. Chem Biol 2: 83-89.
    • (1995) Chem Biol , vol.2 , pp. 83-89
    • Shi, Y.1    Berg, J.M.2
  • 25
    • 0037335514 scopus 로고    scopus 로고
    • Human zinc fingers as building blocks in the construction of artificial transcription factors
    • Bae, KH, Kwon, YD, Shin, HC, Hwang, MS, Ryu, EH, Park, KS et al. (2003). Human zinc fingers as building blocks in the construction of artificial transcription factors. Nat Biotechnol 21: 275-280.
    • (2003) Nat Biotechnol , vol.21 , pp. 275-280
    • Bae, K.H.1    Kwon, Y.D.2    Shin, H.C.3    Hwang, M.S.4    Ryu, E.H.5    Park, K.S.6
  • 26
    • 0034652141 scopus 로고    scopus 로고
    • Positive aod negative regulation of endogenous genes by designed transcription factors
    • Beerli, RR, Dreier, B, Barbas, CF, 3rd (2000). Positive aod negative regulation of endogenous genes by designed transcription factors. Proc Natl Acad Sci USA 97: 1495-1500.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 1495-1500
    • Beerli, R.R.1    Dreier, B.2    Barbas 3rd, C.F.3
  • 27
    • 0035815697 scopus 로고    scopus 로고
    • Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A
    • Liu, PQ, Rebar, EJ, Zhang, L, Liu, Q, Jamieson, AC, Liang, Y et al (2001). Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A. J Biol Chem 276: 11323-11334.
    • (2001) J Biol Chem , vol.276 , pp. 11323-11334
    • Liu, P.Q.1    Rebar, E.J.2    Zhang, L.3    Liu, Q.4    Jamieson, A.C.5    Liang, Y.6
  • 28
    • 30344473645 scopus 로고    scopus 로고
    • Mammalian gene targeting with designed zinc finger nucleases
    • Porteus, MH (2006). Mammalian gene targeting with designed zinc finger nucleases. Mol Ther 13: 438-446.
    • (2006) Mol Ther , vol.13 , pp. 438-446
    • Porteus, M.H.1
  • 29
    • 0036007025 scopus 로고    scopus 로고
    • PPARγ knockdown by engineered transcription factors: Exogenous PPARγ2 but not PPARγ1 reactivates adipogenesis
    • Ren, D, Collingwood, TN, Rebar, EJ, Wolffe, AP and Camp, HS (2002). PPARγ knockdown by engineered transcription factors: Exogenous PPARγ2 but not PPARγ1 reactivates adipogenesis. Genes Dev 16: 27-32.
    • (2002) Genes Dev , vol.16 , pp. 27-32
    • Ren, D.1    Collingwood, T.N.2    Rebar, E.J.3    Wolffe, A.P.4    Camp, H.S.5
  • 30
    • 0031053362 scopus 로고    scopus 로고
    • A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites
    • Greisman, HA and Pabo, CO (1997). A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites. Science 275: 657-661.
    • (1997) Science , vol.275 , pp. 657-661
    • Greisman, H.A.1    Pabo, C.O.2
  • 33
    • 0037040240 scopus 로고    scopus 로고
    • Validated zinc finger protein designs for all 16 GNN DNA triplet targets
    • Liu, Q Xia, Z, Zhong, X and Case, CC (2002). Validated zinc finger protein designs for all 16 GNN DNA triplet targets. J Biol Chem 277: 3850-3856.
    • (2002) J Biol Chem , vol.277 , pp. 3850-3856
    • Liu, Q.1    Xia, Z.2    Zhong, X.3    Case, C.C.4
  • 34
    • 0036168937 scopus 로고    scopus 로고
    • Engineering polydactyl zinc-finger transcription factors
    • Beerli, RR and Barbas, CF, 3rd (2002). Engineering polydactyl zinc-finger transcription factors. Nat Biotechnol 20: 135-141.
    • (2002) Nat Biotechnol , vol.20 , pp. 135-141
    • Beerli, R.R.1    Barbas 3rd, C.F.2
  • 35
    • 0032437591 scopus 로고    scopus 로고
    • Toward controlling gene expression at will: Specific regulation of the erbB-2/ HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks
    • Beerli, RR, Segal, DJ, Dreier, B and Barbas, CF, 3rd (1998). Toward controlling gene expression at will: Specific regulation of the erbB-2/ HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks. Proc Natl Acad Sci USA 95: 14628-14633.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14628-14633
    • Beerli, R.R.1    Segal, D.J.2    Dreier, B.3    Barbas 3rd, C.F.4
  • 36
    • 0035800769 scopus 로고    scopus 로고
    • Development of zinc finger domains for recognition of the 5′-ANN-3′ family of DNA sequences and their use in the construction of artificial transcription factors
    • Dreier, B, Beerli, RR, Segal, DJ, Flippin, JD and Barbas, CF, 3rd (2001). Development of zinc finger domains for recognition of the 5′-ANN-3′ family of DNA sequences and their use in the construction of artificial transcription factors. J Biol Chem 276 29466-29478.
    • (2001) J Biol Chem , vol.276 , pp. 29466-29478
    • Dreier, B.1    Beerli, R.R.2    Segal, D.J.3    Flippin, J.D.4    Barbas 3rd, C.F.5
  • 37
    • 27444444925 scopus 로고    scopus 로고
    • Development of zinc finger domains for recognition of the 5′-CNN-3′ family DNA sequences and their use in the construction of artificial transcription factors
    • Dreier, B, Fuller, RP, Segal, DJ, Lund, CV, Blancafort, P, Huber, A et al. (2005). Development of zinc finger domains for recognition of the 5′-CNN-3′ family DNA sequences and their use in the construction of artificial transcription factors. J Biol Chem 280: 35588-35597.
    • (2005) J Biol Chem , vol.280 , pp. 35588-35597
    • Dreier, B.1    Fuller, R.P.2    Segal, D.J.3    Lund, C.V.4    Blancafort, P.5    Huber, A.6
  • 38
    • 0142091373 scopus 로고    scopus 로고
    • Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection
    • Hurt, JA, Thibodeau, SA, Hirsh, AS, Pabo, CO and Joung, JK (2003). Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection. Proc Natl Acad Sci USA 100 12271-12276.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12271-12276
    • Hurt, J.A.1    Thibodeau, S.A.2    Hirsh, A.S.3    Pabo, C.O.4    Joung, J.K.5
  • 39
    • 0034691202 scopus 로고    scopus 로고
    • A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions
    • Joung, JK, Ramm, El and Pabo, CO (2000). A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions. Proc Natl Acad Sci USA 97: 7382-7387.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 7382-7387
    • Joung, J.K.1    Ramm, E.2    Pabo, C.O.3
  • 40
    • 0033524954 scopus 로고    scopus 로고
    • Analysis of zinc fingers optimized via phage display: Evaluating the utility of a recognition code
    • Wolfe, SA, Greisman, HA, Ramm, El and Pabo, CO (1999). Analysis of zinc fingers optimized via phage display: Evaluating the utility of a recognition code. J Mol Biol 285: 1917-1934.
    • (1999) J Mol Biol , vol.285 , pp. 1917-1934
    • Wolfe, S.A.1    Greisman, H.A.2    Ramm, E.3    Pabo, C.O.4
  • 42
    • 0037627488 scopus 로고    scopus 로고
    • Efficient gene targeting mediated by adeno-associated virus and DNA double-strand breaks
    • Porteus, MH, Cathomen, T, Weitzman, MD and Baltimore, D (2003). Efficient gene targeting mediated by adeno-associated virus and DNA double-strand breaks. Mol Cell Biol 23: 3558-3565.
    • (2003) Mol Cell Biol , vol.23 , pp. 3558-3565
    • Porteus, M.H.1    Cathomen, T.2    Weitzman, M.D.3    Baltimore, D.4
  • 45
    • 34447323568 scopus 로고    scopus 로고
    • Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
    • Szczepek, M, Brondani, V, Büchel, J, Serrano, L, Segal, DJ and Cathomen, T (2007). Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases. Nat Biotechnol 25: 786-793.
    • (2007) Nat Biotechnol , vol.25 , pp. 786-793
    • Szczepek, M.1    Brondani, V.2    Büchel, J.3    Serrano, L.4    Segal, D.J.5    Cathomen, T.6
  • 48
    • 0034739853 scopus 로고    scopus 로고
    • p53 Binding protein 1 (53BP1) is an early participant in the cellular response to DNA double-strand breaks
    • Schultz, LB, Chehab, NH, Malikzay, A and Halazonetis, TD (2000). p53 Binding protein 1 (53BP1) is an early participant in the cellular response to DNA double-strand breaks. J Cell Biol 151: 1381-1390.
    • (2000) J Cell Biol , vol.151 , pp. 1381-1390
    • Schultz, L.B.1    Chehab, N.H.2    Malikzay, A.3    Halazonetis, T.D.4
  • 50
    • 1542346163 scopus 로고    scopus 로고
    • High throughput β-galactosidase assay for bacterial cell-based reporter systems
    • Thibodeau, SA, Fang, R and Joung, JK (2004). High throughput β-galactosidase assay for bacterial cell-based reporter systems. Biotechniques 36: 410-415.
    • (2004) Biotechniques , vol.36 , pp. 410-415
    • Thibodeau, S.A.1    Fang, R.2    Joung, J.K.3


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