메뉴 건너뛰기




Volumn 4, Issue 10, 1996, Pages 1171-1180

Zif268 protein-DNA complex refined at 1.6 Å: A model system for understanding zinc finger-DNA interactions

Author keywords

protein DNA recognition; X ray crystallography; Zif268; zinc finger

Indexed keywords

EUKARYOTA;

EID: 0030587774     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(96)00125-6     Document Type: Article
Times cited : (413)

References (28)
  • 1
    • 0040215628 scopus 로고
    • Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes
    • Miller, J., McLachlan, A.D. & Klug, A. (1985). Repetitive zinc-binding domains in the protein transcription factor IIIA from Xenopus oocytes. EMBO J. 4, 1609-1614.
    • (1985) EMBO J. , vol.4 , pp. 1609-1614
    • Miller, J.1    McLachlan, A.D.2    Klug, A.3
  • 2
    • 0026466149 scopus 로고
    • Determination of the base recognition positions of zinc fingers from sequence analysis
    • Jacobs, G.H. (1992). Determination of the base recognition positions of zinc fingers from sequence analysis. EMBO J. 11, 4507-4517.
    • (1992) EMBO J. , vol.11 , pp. 4507-4517
    • Jacobs, G.H.1
  • 3
    • 0025977711 scopus 로고
    • Identification and characterization of 'zinc-finger' domains by the polymerase chain reaction
    • Pellegrino, G.R. & Berg, J.M. (1991). Identification and characterization of 'zinc-finger' domains by the polymerase chain reaction. Proc. Natl. Acad. Sci. USA 88, 671-675.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 671-675
    • Pellegrino, G.R.1    Berg, J.M.2
  • 4
    • 0026744678 scopus 로고
    • Zinc finger-DNA recognition: Analysis of base specificity by site-directed mutagenesis
    • Nardelli, J., Gibson, T. & Charnay, P. (1992). Zinc finger-DNA recognition: analysis of base specificity by site-directed mutagenesis. Nucleic. Acids Res. 20, 4137-4144.
    • (1992) Nucleic. Acids Res. , vol.20 , pp. 4137-4144
    • Nardelli, J.1    Gibson, T.2    Charnay, P.3
  • 5
    • 0027401045 scopus 로고
    • Use of a zinc finger consensus sequence framework and specificity rules to design specific DNA binding proteins
    • Desjarlais, J.R. & Berg, J.M. (1993). Use of a zinc finger consensus sequence framework and specificity rules to design specific DNA binding proteins. Proc. Natl. Acad. Sci. USA 90, 2256-2260.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 2256-2260
    • Desjarlais, J.R.1    Berg, J.M.2
  • 6
    • 0028948325 scopus 로고
    • Structure-based design of transcription factors
    • Pomerantz, J.L., Sharp, P.A. & Pabo, C.O. (1995). Structure-based design of transcription factors. Science 267, 93-96.
    • (1995) Science , vol.267 , pp. 93-96
    • Pomerantz, J.L.1    Sharp, P.A.2    Pabo, C.O.3
  • 7
    • 0028328872 scopus 로고
    • Zinc finger phage: Affinity selection of fingers with new DNA-binding specificities
    • Rebar, E.J. & Pabo, C.O. (1994). Zinc finger phage: affinity selection of fingers with new DNA-binding specificities. Science 263, 671-673.
    • (1994) Science , vol.263 , pp. 671-673
    • Rebar, E.J.1    Pabo, C.O.2
  • 8
    • 0028227930 scopus 로고
    • In vitro selection of zinc fingers with altered DNA-binding specificity
    • Jamieson, A.C., Kim, S.-H. & Wells, J.A (1994). In vitro selection of zinc fingers with altered DNA-binding specificity. Biochemistry 33, 5689-5695.
    • (1994) Biochemistry , vol.33 , pp. 5689-5695
    • Jamieson, A.C.1    Kim, S.-H.2    Wells, J.A.3
  • 9
    • 0027994717 scopus 로고
    • Toward a code for the interactions of zinc fingers with DNA: Selection of randomized fingers displayed on phage
    • Choo, Y. & Klug, A. (1994). Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage. Proc. Natl. Acad. Sci. USA 91, 11163-11167.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 11163-11167
    • Choo, Y.1    Klug, A.2
  • 10
    • 0028888530 scopus 로고
    • Building zinc fingers by selection: Toward a therapeutic application
    • Wu, H., Yang, W.-P. & Barbas III, C.F. (1995). Building zinc fingers by selection: toward a therapeutic application. Proc. Natl. Acad. Sci. USA 92, 344-348.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 344-348
    • Wu, H.1    Yang, W.-P.2    Barbas III, C.F.3
  • 11
    • 0025773296 scopus 로고
    • Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 A
    • Pavletich, N.P. & Pabo, C.O. (1991). Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A. Science 252, 809-817.
    • (1991) Science , vol.252 , pp. 809-817
    • Pavletich, N.P.1    Pabo, C.O.2
  • 12
    • 0027423758 scopus 로고
    • Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers
    • Pavletich, N.P. & Pabo, C.O. (1993). Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers. Science 261, 1701-1707.
    • (1993) Science , vol.261 , pp. 1701-1707
    • Pavletich, N.P.1    Pabo, C.O.2
  • 13
    • 0028900074 scopus 로고
    • DNA-binding specificity of NGFI-A and related zinc finger transcription factors
    • Swirnoff, A.H. & Milbrandt, J. (1995). DNA-binding specificity of NGFI-A and related zinc finger transcription factors. Mol. Cell. Biol. 15, 2275-2287.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2275-2287
    • Swirnoff, A.H.1    Milbrandt, J.2
  • 14
    • 0028046895 scopus 로고
    • Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions
    • Choo, Y. & Klug, A. (1994). Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions. Proc. Natl. Acad. Sci. USA 91, 11168-11172.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 11168-11172
    • Choo, Y.1    Klug, A.2
  • 15
    • 0024391088 scopus 로고
    • DNA binding site of the growth factor-inducible protein Zif268
    • Christy, B. & Nathans, D. (1989). DNA binding site of the growth factor-inducible protein Zif268. Proc. Natl. Acad. Sci. USA 86, 8737-8741.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 8737-8741
    • Christy, B.1    Nathans, D.2
  • 16
    • 0023057732 scopus 로고
    • A conserved family of nuclear proteins containing structural elements of the finger protein encoded by Krüppel, a Drosophila segmentation gene
    • Schuh, R., et al., & Jàckle, H. (1986). A conserved family of nuclear proteins containing structural elements of the finger protein encoded by Krüppel, a Drosophila segmentation gene. Cell 47, 1025-1032.
    • (1986) Cell , vol.47 , pp. 1025-1032
    • Schuh, R.1    Jàckle, H.2
  • 17
    • 0027327521 scopus 로고
    • A role in DNA binding for the linker sequences of the first three fingers of TFIIIA
    • Choo, Y. & Klug, A. (1993). A role in DNA binding for the linker sequences of the first three fingers of TFIIIA. Nuc. Acids Res. 21, 3341-3346.
    • (1993) Nuc. Acids Res. , vol.21 , pp. 3341-3346
    • Choo, Y.1    Klug, A.2
  • 18
    • 0027749348 scopus 로고
    • The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition
    • Fairall, L., Schwabe, J.W.R., Chapman, L., Finch, J.T. & Rhodes, D. (1993). The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition. Nature 366, 483-487.
    • (1993) Nature , vol.366 , pp. 483-487
    • Fairall, L.1    Schwabe, J.W.R.2    Chapman, L.3    Finch, J.T.4    Rhodes, D.5
  • 19
    • 0028241531 scopus 로고
    • Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes
    • Nekludova, L. & Pabo, C.O. (1994). Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes. Proc. Natl. Acad. Sci. USA 91, 6948-6952.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 6948-6952
    • Nekludova, L.1    Pabo, C.O.2
  • 20
    • 0018433876 scopus 로고
    • Circular dichroism and DNA secondary structure
    • Baase, W.A. & Johnson, W.C., Jr. (1979). Circular dichroism and DNA secondary structure. Nuc. Acids Res. 6, 797-814.
    • (1979) Nuc. Acids Res. , vol.6 , pp. 797-814
    • Baase, W.A.1    Johnson Jr., W.C.2
  • 21
    • 0018785331 scopus 로고
    • Correlations between the duplex winding angle and the circular dichroism spectrum of calf thymus DNA
    • Chan, A., Kilkuskie, R. & Hanlon, S. (1979). Correlations between the duplex winding angle and the circular dichroism spectrum of calf thymus DNA. Biochemistry 18, 84-91.
    • (1979) Biochemistry , vol.18 , pp. 84-91
    • Chan, A.1    Kilkuskie, R.2    Hanlon, S.3
  • 22
    • 0019873824 scopus 로고
    • Correlations between deoxyribonucleic acid structural parameters and calculated circular dichroism spectra
    • Johnson, B.B., Dahl, K.S., Tinoco Jr., I., Ivanov, V.I. & Zhurkin, V.B. (1981). Correlations between deoxyribonucleic acid structural parameters and calculated circular dichroism spectra. Biochemistry 20, 73-78.
    • (1981) Biochemistry , vol.20 , pp. 73-78
    • Johnson, B.B.1    Dahl, K.S.2    Tinoco Jr., I.3    Ivanov, V.I.4    Zhurkin, V.B.5
  • 23
    • 0029930225 scopus 로고    scopus 로고
    • DNA unwinding induced by zinc finger protein binding
    • Shi, Y. & Berg, J.M. (1996). DNA unwinding induced by zinc finger protein binding. Biochemistry 35, 3845-3848.
    • (1996) Biochemistry , vol.35 , pp. 3845-3848
    • Shi, Y.1    Berg, J.M.2
  • 26
    • 12644268642 scopus 로고
    • University of Alberta, Alberta, Canada, and California Institute of Technology, CA, USA
    • Israel, M. & Chirino, A.J. (1994). TOM/FRODO version 3.0. University of Alberta, Alberta, Canada, and California Institute of Technology, CA, USA.
    • (1994) TOM/FRODO Version 3.0
    • Israel, M.1    Chirino, A.J.2
  • 27
    • 79952608525 scopus 로고
    • Accurate bond and angle parameters for X-ray protein structure refinement
    • Engh, RA & Huber, R. (1991). Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallogr. A 47, 392-400.
    • (1991) Acta Crystallogr. A , vol.47 , pp. 392-400
    • Engh, R.A.1    Huber, R.2
  • 28
    • 0347986800 scopus 로고
    • University of California, Los Angeles, CA, USA
    • Dickerson, R. (1993). NEWHELIX93. University of California, Los Angeles, CA, USA.
    • (1993) NEWHELIX93
    • Dickerson, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.