Interaction of aminoacyl-tRNA synthetases with tRNA: General principles and distinguishing characteristics of the high-molecular-weight substrate recognition

Biochemistry (Moscow)

Volumn 72, Issue 3, 2007, Pages 247-263

  Vasil'eva, I A ^a   Moor, N A ^a  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

Author keywords

Aminoacyl tRNA synthetase; Protein RNA interaction; Specificity; tRNA recognition

Indexed keywords

BIOCHEMISTRY; CRYSTALLOGRAPHY; ENZYMES; MOLECULAR STRUCTURE; MOLECULAR WEIGHT; MUTAGENESIS;

AMINOACYL-TRNA SYNTHETASE; PROTEIN-RNA INTERACTION; TRNA RECOGNITION;

RNA;

AMINO ACID TRANSFER RNA LIGASE; TRANSFER RNA;

ANIMAL; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; ENZYME SPECIFICITY; GENETICS; HUMAN; METABOLISM; MOLECULAR WEIGHT; PROTEIN BINDING; REVIEW;

AMINO ACYL-TRNA SYNTHETASES; ANIMALS; BINDING SITES; HUMANS; MODELS, MOLECULAR; MOLECULAR WEIGHT; NUCLEIC ACID CONFORMATION; PROTEIN BINDING; RNA, TRANSFER; SUBSTRATE SPECIFICITY;

EID: 34147101802     PISSN: 00062979     EISSN: 16083040     Source Type: Journal    
DOI: 10.1134/S0006297907030029     Document Type: Article

References (189)

1. Giege, R., Puglisi, J. D., and Florentz, C. (1993) Progr. Nucleic Acids Res., 45, 129-206.
2. Meinnel, T., Mechulam, Y., and Blanquet, S. (1995) in tRNA: Structure, Biosynthesis, and Function (Soll, D., and RajBhandary, U., eds.) American Society for Microbiology, Washington, pp. 251-292.
3. Ibba, M., and Soll, D. (2000) Annu. Rev. Biochem., 69, 617-650.
4. Praetorius-Ibba, M., and Ibba, M. (2003) Mol. Microbiol., 48, 631-637.
5. Ibba, M., Curnow, A. W., and Soll, D. (1997) Trends Biochem. Sci., 22, 39-42.
6. Eriani, G., Delarue, M., Poch, O., Gangloff, J., and Moras, D. (1990) Nature, 347, 203-206.
7. Cusack, S., Berthet-Colominas, C., Hartlein, M., Nassar, N., and Leberman, R. (1990) Nature, 347, 249-255.
8. First, E. A. (2005) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds.) Landes Bioscience, Georgetown, TX, pp. 328-352.
9. Gouda, M., Yokogawa, T., and Nishikawa, K. (2002) Biochem. Biophys. Res. Commun., 297, 950-955.
10. Ibba, M., Morgan, S., Curnow, A. W., Pridmore, D. R., Vothknecht, U. C., Gardner, W., Lin, W., Woese, C. R., and Soll, D. (1997) Science, 278, 1119-1122.
11. Delarue, M., and Moras, D. (1993) Bioessays, 15, 675-687.
12. Ibba, M., Becker, H. D., Stathopoulos, C., Tumbula, D. L., and Soll, D. (2000) Trends Biochem. Sci., 25, 311-316.
13. Arnez, J. G., and Moras, D. (1997) Trends Biochem. Sci., 22, 211-216.
14. Giege, R., and Frugier, M. (2003) in Translation Mechanisms (Lapointe, J., and Brakier-Gingras, L., eds.) Landes Bioscience, Georgetown, TX, pp. 1-24.
15. Giege, R., Sissler, M., and Florentz, C. (1998) Nucleic Acids Res., 26, 5017-5035.
16. Pallanck, L., and Schulman, L. H. (1992) in Transfer Ribonucleic Acid in Protein Synthesis (Hatfield, D. L., Lee, B. J., and Pirtle, R. M., eds.) CRC Press, London, pp. 279-318.
17. Beuning, P. J., and Musier-Forsyth, K. (1999) Biopolymers, 52, 1-28.
18. Fersht, A. (1985) in Enzyme, Structure and Mechanism (Fersht, A., ed.) N. Y., pp. 98-120.
19. Sampson, J. R., and Uhlenbeck, O. C. (1988) Proc. Natl. Acad. Sci. USA, 85, 1033-1037.
20. Milligan, J. R., Groebe, D. R., Witherell, G. W., and Uhlenbeck, O. C. (1987) Nucleic Acids Res., 15, 8783-8798.
21. Milligan, J. R., and Uhlenbeck, O. C. (1989) Meth. Enzymol., 180, 51-62.
22. Gasparutto, D., Livache, T., Bazin, H., Duplaa, A.-M., Guy, A., Khorlin, A., Molko, D., Roget, A., and Teoule, R. (1992) Nucleic Acids Res., 20, 5159-5166.
23. Schreier, A. A., and Schimmel, P. R. (1972) Biochemistry, 11, 1582-1589.
24. Wolfson, A. D., Pleiss, J. A., and Uhlenbeck, O. C. (1998) RNA, 4, 1019-1023.
25. Eriani, G., and Cavarelli, J. (2005) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds.) Landes Bioscience, Georgetown, TX, pp. 3-11.
26. Shimada, A., Nureki, O., Goto, M., Takahashi, S., and Yokoyama, S. (2001) Proc. Natl. Acad. Sci. USA, 98, 13537-13542.
27. Geslain, R., Martin, F., Camasses, A., and Eriani, G. (2003) Nucleic Acids Res., 31, 4729-4737.
28. Guigou, L., and Mirande, M. (2005) Biochemistry, 44, 16540-16548.
29. Nureki, O., and Yokoyama, S. (2005) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds.) Landes Bioscience, Georgetown, TX, pp. 59-67.
30. Fukai, S., Nureki, O., Sekine, S., Shimada, A., Vassylyev, D. G., and Yokoyama, S. (2003) RNA, 9, 100-111.
31. Asahara, H., Nameki, N., and Hasegawa, T. (1998) J. Mol. Biol., 283, 605-618.
32. Tocchini-Valentini, G., Saks, M. E., and Abelson, J. (2000) J. Mol. Biol., 298, 779-793.
33. Du, X., and Wang, E.-D. (2003) Nucleic Acids Res., 31, 2865-2872.
34. Lincecum, T. L., Jr., and Martinis, S. A. (2005) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds.) Landes Bioscience, Georgetown, TX, pp. 36-46.
35. Soma, A., Uchiyama, K., Sakamoto, T., Maeda, M., and Himeno, H. (1999) J. Mol. Biol., 293, 1029-1038.
36. Ramesh, V., and RajBhandary, U. L. (2001) J. Biol. Chem., 276, 3660-3665.
37. Lipman, R. S., and Hou, Y-M. (1998) Proc. Natl. Acad. Sci. USA, 95, 13495-13500.
38. Sherlin, L. D., Bullock, T. L., Newberry, K. J., Lipman, R. S., Hou, Y-M., Beijer, B., Sproat, B. S., and Perona, J. J. (2000) J. Mol. Biol., 299, 431-446.
39. Shitivelband, S., and Hou, Y-M. (2005) J. Mol. Biol., 348, 513-521.
40. Hou, Y-M., and Perona, J. J. (2005) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds.) Landes Bioscience, Georgetown, TX, pp. 12-23.
41. Hou, Y-M., Motegi, H., Lipman, R. S., Hamann, C. S., and Shiba, K. (1999) Nucleic Acids Res., 27, 4743-4750.
42. Evilia, C., Ming, X., Dassarma, S., and Hou, Y-M. (2003) RNA, 9, 794-801.
43. Kruger, M. K., and Sorensen, M. A. (1998) J. Mol. Biol., 284, 609-620.
44. McClain, W. H., Schneider, J., Bhattacharya, S., and Gabriel, K. (1998) Proc. Natl. Acad. Sci. USA, 95, 460-465.
45. Nissan, T. A., Oliphant, B., and Perona, J. J. (1999) RNA, 5, 434-445.
46. Nissan, T. A., and Perona, J. J. (2000) RNA, 6, 1585-1596.
47. Iwaki, J., Asahara, H., Nagaoka, Y., Yokosawa, J., Umehara, T., Kawarabayasi, Y., Koyama, Y., Sako, Y., Kuno, A., and Hasegawa, T. (2002) Nucleic Acids Res. (Suppl.), 2, 225-226.
48. Bonnefond, L., Giege, R., and Rudinger-Thirion, J. (2005) Biochimie, 87, 873-883.
49. Fechter, P., Rudinger-Thirion, J., Theobald-Dietrich, A., and Giege, R. (2000) Biochemistry, 39, 1725-1733.
50. Fechter, P., Rudinger-Thirion, J., Tukalo, M., and Giege, R. (2001) Eur. J. Biochem., 268, 761-767.
51. Wakasugi, K., Quinn, C. L., Tao, N., and Schimmel, P. (1998) EMBO J., 17, 297-305.
52. Kobayashi, T., Nureki, O., Ishitani, R., Yaremchuk, A., Tukalo, M., Cusack, S., Sakamoto, K., and Yokoyama, S. (2003) Nat Struct. Biol., 10, 425-432.
53. Xu, F., Jiang, G., Li, W., He, X., Jin, Y., and Wang, D. (2002) Biochemistry, 41, 8087-8792.
54. Guo, Q., Gong, Q., Tong, K. L., Vestergaard, B., Costa, A., Desgres, J., Wong, M., Grosjean, H., Zhu, G., Wong, J. T., and Xue, H. (2002) J. Biol. Chem., 277, 14343-14349.
55. Ulmasov, B., Topin, A., Chen, Z., He, S. H., and Folk, W. R. (1998) Nucleic Acids Res., 26, 5139-5141.
56. Ibba, M., Losey, H. C., Kawarabayasi, Y., Kikuchi, H., and Bunjun, S. (1999) Proc. Natl. Acad. Sci. USA, 96, 418-423.
57. Ambrogelly, A., Frugier, M., Ibba, M., Soll, D., and Giege, R. (2005) FEBS Lett., 579, 2629-2634.
58. Soll, D., Becker, H. D., Plateau, P., Blanquet, S., and Ibba, M. (2000) Proc. Natl. Acad. Sci. USA, 97, 14224-14228.
59. Ambrogelly, A., Korencic, D., and Ibba, M. (2002) J. Bacteriol., 184, 4594-4600.
60. Lenhard, B., Orellana, 0., Ibba, M., and Weygand-Durasevic, I. (1999) Nucleic Acids Res., 27, 721-729.
61. Weygand-Durasevic, I., and Cusack, S. (2005) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds.) Landes Bioscience, Georgetown, TX, pp. 177-192.
62. Gruic-Sovulj, I., Jaric, J., Dulic, M., Cindric, M., and Weygand-Durasevic, I. (2006) J. Mol. Biol., 361, 128-139.
63. Heckl, M., Busch, K., and Gross, H. J. (1998) FEBS Lett., 427, 315-319.
64. Korencic, D., Polycarpo, C., Weygand-Durasevic, I., and Soll, D. (2004) J. Biol. Chem., 279, 48780-48786.
65. Nagaoka, Y., Yokozawa, J., Umehara, T., Iwaki, J., Okamoto, K., Kawarabayasi, Y., Koyama, Y., Sako, Y., Wakagi, T., Kuno, A., and Hasegawa, T. (2002) Nucleic Acids Res. (Suppl.), 2, 81-82.
66. Ishikura, H., Nagaoka, Y., Yokozawa, J., Umehara, T., Kuno, A., and Hasegawa, T. (2000) Nucleic Acids Symp. Ser., 44, 83-84.
67. Burke, B., Yang, F., Chen, F., Stehlin, C., Chan, B., and Musier-Forsyth, K. (2000) Biochemistry, 39, 15540-15547.
68. Hasegawa, T., and Yokogawa, T. (2000) Nucleic Acids Symp. Ser., 44, 7-8.
69. Lipman, R. S., Wang, J., Sowers, K. R., and Hou, Y-M. (2002) J. Mol. Biol., 315, 943-949.
70. Yokozawa, J., Okamoto, K., Kawarabayasi, Y., Kuno, A., and Hasegawa, T. (2003) Nucleic Acids Res. (Suppl.), 3, 247-248.
71. Nameki, N., Tamura, K., Asahara, H., and Hasegawa, T. (1997) J. Mol. Biol., 268, 640-647.
72. Mazauric, M.-H., Roy, H., and Kern, D. (1999) Biochemistry, 38, 13094-13105.
73. Hawko, S. A., and Francklyn, C. S. (2001) Biochemistry, 40, 1930-1936.
74. Connolly, S. A., Rosen, A. E., Musier-Forsyth, K., and Francklyn, C. S. (2004) Biochemistry, 43, 962-969.
75. Rosen, A. E., and Musier-Forsyth, K. (2004) J. Am. Chem. Soc., 126, 64-65.
76. Rosen, A. E., Brooks, B. S., Guth, E., Francklyn, C. S., and Musier-Forsyth, K. (2006) RNA, 12, 1315-1322.
77. Choi, H., Gabriel, K., Schneider, J., Otten, S., and McClain, W. H. (2003) RNA, 9, 386-393.
78. Giege, R., Florentz, C., Kern, D., Gangloff, J., Eriani, G., and Moras, D. (1996) Biochimie, 78, 605-623.
79. Giege, R., and Rees, B. (2005) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds.) Landes Bioscience, Georgetown, TX, pp. 210-226.
80. Fender, A., Geslain, R., Eriani, G., Giege, R., Sissler, M., and Florentz, C. (2004) Nucleic Acids Res., 32, 5076-5086.
81. Shiba, K., Stello, T., Motegi, H., Noda, T., Musier-Forsyth, K., and Schimmel, P. (1997) J. Biol. Chem., 272, 22809-22816.
82. Stello, T., Hong, M., and Musier-Forsyth, K. (1999) Nucleic Acids Res., 27, 4823-4829.
83. Fukunaga, J.-I., Ohno, S., Nishikawa, K., and Yokogawa, T. (2006) Nucleic Acids Res., 34, 3181-3188.
84. Vasil'eva, I. A., Ankilova, V. N., Lavrik, O. I., and Moor, N. A. (2002) J. Mol. Recogn., 15, 188-196.
85. Beuning, P. J., Yang, F., Schimmel, P., and Musier-Forsyth, K. (1997) Proc. Natl. Acad. Sci. USA, 94, 10150-10154.
86. McClain, W. H., Gabriel, K., and Schneider, J. (1996) RNA, 2, 105-109.
87. Mueller, U., Schubel, H., Sprinzl, M., and Heinemann, U. (1999) RNA, 5, 670-677.
88. Choi, H., Otten, S., Schneider, J., and McClain, W. H. (2002) J. Mol. Biol., 324, 573-576.
89. Kallick, D., Nagan, M., Beuning, P. J., Kerimo, S., Tessmer, M., Cramer, C. J., and Musier-Forsyth, K. (2002) J. Phys. Chem. B, 106, 8878-8884.
90. Beuning, P. J., Nagan, M. C., Cramer, C. J., Musier-Forsyth, K., Gelpi, J. L., and Bashford, D. P. (2002) RNA, 8, 659-670.
91. McClain, W. H., Gabriel, K., Bhattacharya, S., Jou, Y.-Y., and Schneider, J. (1999) J. Mol. Biol., 286, 1025-1032.
92. Sprinzl, M., Horn, C., Brown, M., Ioudovitch, A., and Steinberg, S. (1998) Nucleic Acids Res., 26, 148-153.
93. Limbach, P. A., Crain, P. F., and McCloskey, J. A. (1994) Nucleic Acids Res., 22, 2183-2196.
94. Kisselev, L. L., and Frolova, L. Yu. (1964) Biokhimiya, 29, 1177-1189.
95. Jilyaeva, T. I., and Kisselev, L. L. (1970) FEBS Lett., 10, 229-232.
96. Bovee, M. L., Yan, W., Sproat, B. S., and Francklyn, C. S. (1999) Biochemistry, 38, 13725-13735.
97. Chihade, J. W., Hayashibara, K., Shiba, K., and Schimmel, P. (1998) Biochemistry, 37, 9193-9202.
98. Crothers, D. M., Seno, T., and Soil, D. (1972) Proc. Natl. Acad. Sci. USA, 69, 3063-3067.
99. Safro, M., Moor, N., and Lavrik, O. (2005) in The Aminoacyl-tRNA Synthetases (Ibba, M., Francklyn, C., and Cusack, S., eds.) Landes Bioscience, Georgetown, TX, pp. 250-265.
100. Fender, A., Sissler, M., Florentz, C., and Giege, R. (2004) Biochimie, 86, 21-29.
101. Carnicelli, D., Brigotti, M., Rizzi, S., Keith, G., Montanaro, L., and Sperti, S. (2001) FEBS Lett., 492, 238-241.
102. Rudinger, J., Florentz, C., and Giege, R. (1994) Nucleic Acids Res., 22, 5031-5037.
103. Nameki, N., Asahara, H., Shimizu, M., Okada, N., and Himeno, H. (1995) Nucleic Acids Res., 23, 389-394.
104. Ibba, M., Hong, K.-W., Sherman, J. M., Sever, S., and Soll, D. (1996) Proc. Natl. Acad. Sci. USA, 93, 6953-6958.
105. Moor, N. A., Ankilova, V. N., and Lavrik, O. I. (1995) Eur. J. Biochem., 234, 897-902.
106. Kholod, N. S., Pan'kova, N. V., Mayorov, S. G., Krutilina, A. I., Shlyapnikov, M. G., Kisselev, L. L., and Ksenzenko, V. N. (1997) FEBS Lett., 411, 123-127.
107. Cavarelli, J., Rees, B., Ruff, M., Thierry, J. C., and Moras, D. (1993) Nature, 362, 181-184.
108. Sampson, J. R., Behlen, L. S., DiRenzo, A. B., and Uhlenbeck, O. C. (1992) Biochemistry, 31, 4161-4167.
109. Putz, J., Puglisi, J. D., Florentz, C., and Giege, R. (1993) EMBO J., 12, 2949-2957.
110. Becker, H. D., Giege, R., and Kern, D. (1996) Biochemistry, 35, 7447-7458.
111. Delagoutte, B., Moras, D., and Cavarelli, J. (2000) EMBO J., 19, 5599-5610.
112. Fukai, S., Nureki, O., Sekine, S.-I., Shimada, A., Tao, J., Vassylyev, D. G., and Yokoyama, S. (2000) Cell, 103, 793-803.
113. Silvian, L. F., Wang, J., and Steitz, T. A. (1999) Science, 285, 1074-1077.
114. Tukalo, M., Yaremchuk, A., Fukunaga, R., Yokoyama, S., and Cusack, S. (2005) Nat. Struct. Mol. Biol., 12, 923-930.
115. Fukunaga, R., and Yokoyama, S. (2005) Nat. Struct. Mol. Biol., 12, 915-922.
116. Nakanishi, K., Ogiso, Y., Fukai, S., and Nureki, O. (2005) Nat. Struct. Mol. Biol., 12, 931-932.
117. Hauenstein, S., Zhang, C.-M., and Perona, J. J. (2004) Nat. Struct. Mol. Biol., 11, 1134-1141.
118. Rould, M. A., Perona, J. J., Soll, D., and Steitz, T. A. (1989) Science, 246, 1135-1142.
119. Rould, M. A., Perona, J. J., and Steitz, T. A. (1991) Nature, 352, 213-218.
120. Perona, J. J., Rould, M. A., and Steitz, T. A. (1993) Biochemistry, 32, 8758-8771.
121. Arnez, J. G., and Steitz, T. A. (1996) Biochemistry, 35, 14725-14733.
122. Rath, V. L., Silvian, L. F., Beijer, B., Sproat, B. S., and Steitz, T. A. (1998) Structure, 6, 439-449.
123. Bullock, T. L., Uter, N., Nissan, T. A., and Perona, J. J. (2003) J. Mol. Biol., 328, 395-408.
124. Sekine, S., Nureki, O., Shimada, A., Vassylyev, D. G., and Yokoyama, S. (2001) Nat. Struct. Biol., 8, 203-206.
125. Sekine, S., Nureki, O., Dubois, D. Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D. G., and Yokoyama, S. (2003) EMBO J., 22, 676-688.
126. Yaremchuk, A., Kriklivyi, I., Tukalo, M., and Cusack, S. (2002) EMBO J., 21, 3829-3840.
127. Shen, N., Guo, L., Yang, B., Jin, Y., and Ding, J. (2006) Nucleic Acids Res., 34, 3246-3258.
128. Yang, X.-L., Otero, F J., Ewalt, K. L., Liu, J., Swairjo, M. A., Kohrer, C., RajBhandary, U. L., Skene, R. J., McRee, D. E., and Schimmel, P. (2006) EMBO J., 25, 2919-2929.
129. Cusack, S., Yaremchuk, A., Krikliviy, I., and Tukalo, M. (1998) Structure, 6, 101-108.
130. Yaremchuk, A., Cusack, S., and Tukalo, M. (2000) EMBO J., 19, 4745-4758.
131. Yaremchuk, A., Tukalo, M., Grotli, M., and Cusack, S. (2001) J. Mol. Biol., 309, 989-1002.
132. Sankaranarayanan, R., Dock-Bregeon, A. C., Romby, P., Caillet, J., Springer, M., Rees, B., Ehresmann, C., Ehresmann, B., and Moras, D. (1999) Cell, 97, 371-381.
133. Biou, V., Yaremchuk, A., Tukalo, M., and Cusack, S. (1994) Science, 263, 1404-1410.
134. Cusack, S., Yaremchuk, A., and Tukalo, M. (1996) EMBO J., 15, 2834-2842.
135. Ruff, M., Krishnaswamy, S., Boeglin, M., Poterszman, A., Mitschler, A., Podjarny, A., Rees, B., Thierry, J. C., and Moras, D. (1991) Science, 252, 1682-1689.
136. Cavarelli, J., Eriani, G., Rees, B., Ruff, M., Boeglin, M., Mitschler, A., Martin, F., Gangloff, J., Thierry, J.-C., and Moras, D. (1994) EMBO J., 13, 327-337.
137. Rees, B., Cavarelli, J., and Moras, D. (1996) Biochimie, 78, 624-631.
138. Sauter, C., Lorber, B., Cavarelli, J., Moras, D., and Giege, R. (2000) J. Mol. Biol., 299, 1313-1324.
139. Briand, C., Poterszman, A., Eiler, S., Webster, G., Thierry, J., and Moras, D. (2000) J. Mol. Biol., 299, 1051-1060.
140. Eiler, S., Dock-Bregeon, A.-C., Moulinier, L., Thierry, J.-C., and Moras, D. (1999) EMBO J., 18, 6532-6541.
141. Rees, B., Webster, G., Delarue, M., Boeglin, M., and Moras, D. (2000) J. Mol. Biol., 299, 1157-1164.
142. Moulinier, L., Eiler, S., Eriani, G., Gangloff, J., Thierry, J.-C., Gabriel, K., McClain, W. H., and Moras, D. (2001) EMBO J., 20, 5290-5301.
143. Cusack, S., Yaremchuk, A., and Tukalo, M. (1996) EMBO J., 15, 6321-6334.
144. Goldgur, Y., Mosyak, L., Reshetnikova, L., Ankilova, V., Khodyreva, S., Lavrik, O., and Safro, M. (1997) Structure, 5, 59-68.
145. Moor, N., Kotik-Kogan, O., Tworowski, D., Sukhanova, M., and Safro, M. (2006) Biochemistry, 45, 10572-10583.
146. Horowitz, J., Chu, W C., Derrick, W. B., Liu, J. C., Liu, M., and Yue, D. (1999) Biochemistry, 38, 7737-7746.
147. Motoki, I., Yosinari, S., Watanabe, K., and Nishikawa, K. (1991) Nucleic Acids Symp. Ser., 25, 173-174.
148. Dock-Bregeon, A. C., Garcia, A., Giege, R., and Moras, D. (1990) Eur. J. Biochem., 188, 283-290.
149. Schatz, D., Leberman, R., and Eckstein, F. (1991) Proc. Natl. Acad. Sci. USA, 88, 6132-6136.
150. Ming, X., Smith, K., Suga, H., and Hou, Y.-M. (2002) J. Mol. Biol., 318, 1207-1220.
151. Kreutzer, R., Kern, D., Giege, R., and Rudinger, J. (1995) Nucleic Acids Res., 23, 4598-4602.
152. Moor, N. A., Ankilova, V. N., Lavrik, O. I., and Favre, A. (2001) Biochim. Biophys. Acta, 1518, 226-236.
153. Liu, M., Chu, W. C., Liu, J. C., and Horowitz, J. (1997) Nucleic Acids Res., 25, 4883-4890.
154. Asahara, H., and Uhlenbeck, O. (2002) Proc. Natl. Acad. Sci. USA, 99, 3499-3504.
155. Ebel, J. P., Giege, R., Bonnet, J., Kern, D., Befort, N., Bollack, C., Fasiolo, F., Gangloff, J., and Dirheimer, G. (1973) Biochimie, 5, 547-557.
156. Schimmel, P. R., and Soll, D. (1979) Annu. Rev. Biochem., 48, 601-648.
157. Krauss, G., Riesner, D., and Maass, G. (1976) Eur. J. Biochem., 68, 81-93.
158. Bonnet, J., and Ebel, J. P. (1975) Eur. J. Biochem., 58, 193-201.
159. Tworowski, D., and Safro, M. (2003) Protein Sci., 12, 1247-1251.
160. Tworowski, D., Feldman, A. V., and Safro, M. G. (2005) J. Mol. Biol., 350, 866-882.
161. Lam, S., and Schimmel, P. (1975) Biochemistry, 14, 2775-2780.
162. Krauss, G., Pingoud, A., Boehme, D., Riesner, D., Peters, F., and Maas, G. (1975) Eur. J. Biochem., 55, 517-529.
163. Fasiolo, F., Remy, P., Pouyet, J., and Ebel, J. P. (1974) Eur. J. Biochem., 50, 227-236.
164. Krauss, G., Riesner, D., and Maass, G. (1977) Nucleic Acids Res., 4, 2253-2262.
165. Krauss, G., Peters, F., and Maass, G. (1976) Nucleic Acids Res., 3, 631-639.
166. Holler, E., Wang, C. C., and Ford, N. C. (1981) Biochemistry, 20, 861-867.
167. Ankilova, V. N., Khodyreva, S. N., and Lavrik, O. I. (1991) Biokhimiya, 56, 2244-2252.
168. Maelicke, A., Engel, G., Cramer, F., and Staehelin, M. (1974) Eur. J. Biochem., 42, 311-314.
169. Kaminska, M., Shalak, V., and Mirande, M. (2001) Biochemistry, 40, 14309-14316.
170. Francin, M., Kaminska, M., Kerjan, P., and Mirande, M. (2002) J. Biol. Chem., 277, 1762-1769.
171. Francin, M., and Mirande, M. (2003) J. Biol. Chem., 278, 1472-1479.
172. Ryckelynck, M., Giege, R., and Frugier, M. (2003) J. Biol. Chem., 278, 9683-9690.
173. Banerjee, R., Mandal, A. K., Saha, R., Guha, S., Samaddar, S., Bhattacharya, A., and Roy, S. (2003) Nucleic Acids Res., 31, 6035-6042.
174. Bedouelle, H., and Nageotte, R. (1995) EMBO J., 14, 2945-2950.
175. Schmitt, E., Meinnel, T., Panvert, M., Mechulam, Y., and Blanquet, S. (1993) J. Mol. Biol., 233, 615-628.
176. Commans, S., Lazard, M., Delort, F., Blanquet, S., and Plateau, P. (1998) J. Mol. Biol., 278, 801-813.
177. Jia, J., Chen, X.-L, Guo, L.-T., Yu, Y-D., Ding, J.-P., and Jin, Y.-X. (2004) J. Chem. Biol., 279, 41960-41965.
178. Krauss, G., von der Haar, F., and Maass, G. (1979) Biochemistry, 18, 4755-4761.
179. Krauss, G., Coutts, S. M., Riesner, D., and Maass, G. (1978) Biochemistry, 17, 2443-2449.
180. Eriani, G., and Gangloff, J. (1999) J. Mol. Biol., 291, 761-773.
181. Liu, J., Ibba, M., Hong, K. W., and Soll, D. (1998) Biochemistry, 37, 9836-9842.
182. Uter, T. N., Gruic-Sovulj, I., and Perona, J. J. (2005) J. Biol. Chem., 280, 23968-23977.
183. Banerjee, R., Dubois, D. Y., Gauthier, J., Lin, S. X., Roy, S., and Lapointe, J. (2004) Eur. J. Biochem., 271, 724-733.
184. Ibba, M., Sever, S., Praetorius-Ibba, M., and Soll, D. (1999) Nucleic Acids Res., 27, 3631-3637.
185. Gruic-Sovulj, I., Landeka, I., Soll, D., and Weygand-Durasevic, I. (2002) Eur. J. Biochem., 269, 5271-5279.
186. Uter, T. N., and Perona, J. J. (2004) Proc. Natl. Acad. Sci. USA, 101, 14396-14401.
187. Khvorova, A., Motorin, Y., and Wolfson, A. (1999) Nucleic Acids Res., 27, 4451-4456.
188. Vasil'eva, I. A., Favre, A., Lavrik, O. I., and Moor, N. A. (2004) Biochemistry (Moscow), 69, 154-163.
189. Moor, N., Lavrik, O., Favre, A., and Safro, M. (2003) Biochemistry, 42, 10697-10708.