Effect of nucleotide replacements in tRNAPhe on positioning of the acceptor end in the complex with phenylalanyl-tRNA synthetase

Biochemistry (Moscow)

Volumn 69, Issue 2, 2004, Pages 154-163

  Vasil'eva, I A ^a   Favre, A ^b   Lavrik, O I ^a   Moor, N A ^a  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

^b INSTITUT JACQUES MONOD   (France)

Author keywords

4 thiouridine; Acceptor end of tRNA; Affinity modification; Phenylalanyl tRNA synthetase; Thermus thermophilus; tRNA recognition

Indexed keywords

BIOCHEMISTRY; CONFORMATIONS; DERIVATIVES; ENZYMES; METHANOL; MOLECULAR STRUCTURE; REACTION KINETICS;

4-THIOURIDINE; ACCEPTOR END OF TRNA; AFFINITY MODIFICATION; TRNA RECOGNITION;

RNA;

THERMUS; THERMUS THERMOPHILUS;

BACTERIAL PROTEIN; BACTERIAL RNA; CROSS LINKING REAGENT; PHENYLALANINE TRANSFER RNA; PHENYLALANINE TRANSFER RNA LIGASE; THIOURIDINE;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; METABOLISM; PROTEIN BINDING; SITE DIRECTED MUTAGENESIS; THERMUS THERMOPHILUS;

BACTERIAL PROTEINS; BINDING SITES; CROSS-LINKING REAGENTS; ESCHERICHIA COLI; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; NUCLEIC ACID CONFORMATION; PHENYLALANINE-TRNA LIGASE; PROTEIN BINDING; RNA, BACTERIAL; RNA, TRANSFER, PHE; THERMUS THERMOPHILUS; THIOURIDINE;

EID: 3543052450     PISSN: 00062979     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:BIRY.0000018945.99407.3b     Document Type: Article

References (34)

1. Giegé, R., Sissler, M., and Florentz, C. (1998) Nucleic Acids Res., 26, 5017-5035.
2. Beuning, P. J., and Musier-Forsyth, K. (1999) Biopolymers, 52, 1-28.
3. Eriani, G., and Gangloff, J. (1999) J. Mol. Biol., 291, 761-773.
4. Bovee, M. L., Yan, W., Sproat, B. S., and Francklyn, C. S. (1999) Biochemistry, 38, 13725-13735.
5. Ibba, M., Sever, S., Praetorius-Ibba, M., and Söll, D. (1999) Nucleic Acids Res., 27, 3631-3637.
6. Ibba, M., Hong, K. W., Sherman, J. M., Sever, S., and Soil, D. (1996) Proc. Natl. Acad. Sci. USA, 93, 6953-6958.
7. Khvorova, A., Motorin, Y., and Wblfson, A. (1999) Nucleic Acids Res., 27, 4451-4456.
8. Sauter, C., Lorber, B., Cavarelli, J., Moras, D., and Giegé, R. (2000) J. Mol. Biol., 299, 1313-1324.
9. Cavarelli, J., Eriani, G., Rees, B., Ruff, M., Boeglin, M., Mitschler, A., Martin, F., Gangloff, J., Thierry, J. C., and Moras, D. (1994) EMBO J., 13, 327-337.
10. Eiler, S., Dock-Bregeon, A.-C., Moulinier, L., Thierry, J.-C., and Moras, D. (1999) EMBO J., 18, 6532-6541.
11. Cusack, S., Yaremchuk, A., and Tukalo, M. (1996) EMBO J., 15, 2834-2842.
12. Mosyak, L., and Safro, M. (1993) Biochimie, 75, 1091-1098.
13. Sampson, J. R., DiRenzo, A. B., Behlen, L. S., and Uhlenbeck, O. C. (1990) Biochemistry, 29, 2523-2532.
14. Sampson, J. R., Behlen, L. S., DiRenzo, A. B., and Uhlenbeck, O. C. (1992) Biochemistry, 31, 4161-4167.
15. Nazarenko, I. A., Tinkle Peterson, E., Zakharova, O. D., Lavrik, O.I., and Uhlenbeck, O. C. (1992) Nucleic Acids Res., 20, 475-478.
16. Perret, V., Florentz, C., Puglisi, J. D., and Giegé, R. (1992) J. Mol. Biol., 226, 323-333.
17. Tinkle Peterson, E., and Uhlenbeck, O. C. (1992) Biochemistry, 31, 10380-10389.
18. Moor, N., Nazarenko, I., Ankilova, V., Khodyreva, S., and Lavrik, O. (1992) Biochimie, 74, 353-356.
19. Moor, N. A., Ankilova, V. N., and Lavrik, O. I. (1995) Eur. J. Biochem., 234, 897-902.
20. Aphasizhev, R., Senger, B., Rengers, J. U., Sprinzl, M., Walter, P., Nussbaum, G., and Fasiolo, F. (1996) Biochemistry, 35, 117-123.
21. Goldgur, Y., Mosyak, L., Reshetnikova, L., Ankilova, V., Khodyreva, S., Lavrik, O., and Safro, M. (1997) Structure, 5, 59-68.
22. Kreutzer, R., Kern, D., Giegé, R., and Rudinger, J. (1995) Nucleic Acids Res., 23, 4598-4602.
23. Moor, N. A., Ankilova, V. N., Lavrik, O. I., and Favre, A. (2001) Biochim. Biophys. Acta, 1518, 226-236.
24. Vasil'eva, I. A., Ankilova, V. N., Lavrik, O. I., and Moor, N. A. (2002) J. Mol. Recognit., 15, 188-196.
25. Fishman, R., Ankilova, V., Moor, N., and Safro, M. (2001) Acta Crystallogr., D57, 1534-1544.
26. Vasil'eva, I. A., Ankilova, V. N., Lavrik, O. I., and Moor, N. A. (2000) Biochemistry (Moscow), 65, 1157-1166.
27. Vasil'eva, I. A., Bogachev, V. S., Favre, A., Lavrik, O. I., and Moor, N. A. (2004) Biochemistry (Moscow), 69, 143-153.
28. Ankilova, V. N., Reshetnikova, L. S., Chernaya, M. M., and Lavrik, O. I. (1988) FEBS Lett., 227, 97-13.
29. Igloi, G. L. (1988) Biochemistry, 27, 3842-3849.
30. Lechler, A., and Kreutzer, R. (1997) FEBS Lett., 420, 139-142.
31. Moulinier, L., Eiler, S., Eriani, G., Gangloff, J., Thierry, J. C., Gabriel, K., McClain, W. H., and Moras, D. (2001) EMBO J., 20, 5290-5301.
32. Limmer, S., Hofmann, H.-P., Ott, G., and Sprinzl, M. (1993) Proc. Natl. Acad. Sci. USA, 90, 6199-6202.
33. Lee, C. P., Mandal, N., Dyson, M. R., and RajBhandary, U. L. (1993) Proc. Natl. Acad. Sci. USA, 90, 7149-7152.
34. Rodova, M., Ankilova, V., and Safro, M. (1999) Biochem. Biophys. Res. Commun., 255, 765-773.