Role of acceptor stem conformation in tRNA(Val) recognition by its cognate synthetase

Nucleic Acids Research

Volumn 25, Issue 24, 1997, Pages 4883-4890

  Liu, Mingsong ^a,b   Chu, Wen Chy ^a   Liu, Jack C H ^a   Horowitz, Jack ^a  

^a IOWA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; FLUORINE; FLUOROURACIL; SYNTHETASE; TRANSFER RNA; VALINE;

AMINOACYLATION; ANTICODON; ARTICLE; BASE PAIRING; COMPLEX FORMATION; CONTROLLED STUDY; ESCHERICHIA COLI; GENE MUTATION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA CONFORMATION; STEADY STATE;

ANTICODON; BACTERIAL PROTEINS; BASE COMPOSITION; BASE SEQUENCE; ESCHERICHIA COLI; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA, BACTERIAL; RNA, TRANSFER, VAL; SUBSTRATE SPECIFICITY; VALINE-TRNA LIGASE;

ESCHERICHIA COLI;

EID: 0031574399     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.24.4883     Document Type: Article

References (42)

1. Schulman,L.H. (1991) Prog. Nucleic Acid Res. Mol. Biol., 41, 23-87.
2. Giegé,R., Puglisi,J.D. and Florentz,C. (1993) Prog. Nucleic Acid Res. Mol. Biol., 43, 129-206.
3. McClain,W.H. (1993) J. Mol. Biol., 234, 257-280.
4. Sampson,J.R., DiRenzo,A.B., Behlen,L.B. and Uhlenbeck,O.C. (1989) Science, 243, 1363-1366.
5. Pütz, J., Puglisi,J.D., Florentz,C. and Giegé,R. (1991) Science, 252, 1696-1699.
6. Peterson,E.T. and Uhlenbeck,O.C. (1992) Biochemistry, 31, 10380-10389.
7. McClain,W.H., Foss,K., Jenkins,R.A. and Schneider,J. (1990) Proc. Natl. Acad. Sci. USA, 87, 9260-9264.
8. Normanly,J., Ogden,R.C., Horvath,S.J. and Abelson,J. (1986) Nature, 321, 213-219.
9. Hou,Y.-M. and Schimmel,P. (1988) Nature, 333, 140-145.
10. Himeno,H., Hasegawa,T.,Ueda,T., Watanabe,K., Miura,K.I. and Shimizu,M. (1989) Nucleic Acids Res., 17, 7855-7863.
11. Franklyn,C. and Schimmel,P. (1990) Proc. Natl. Acad. Sci. USA, 87, 8655-8659.
12. Schulman,L.H. and Pelka,H. (1988) Science. 242, 765-768.
13. Jahn,M., Rogers,M.J. and Söll,D. (1991) Nature, 352, 258-260.
14. McClain,W.H., Foss,K., Jenkins,R.A. and Schneider,J. (1991) Proc. Natl. Acad. Sci. USA, 88, 6147-6151.
15. Derrick,W.B., Feiz,V., Chu,W.-C. and Horowitz,J. (1991) FASEB J., 5, A808.
16. Tamura,K., Himeno,H., Asahara,H., Hasegawa,T. and Shimizu,M. (1991) Biochem. Biophys. Res. Commun., 177, 619-623.
17. McClain,W.H. and Nicholas,H.B.,Jr (1987) J. Mol. Biol., 194, 635-642.
18. Chu,W.-C. and Horowitz,J. (1991) Biochemistry, 30, 1655-1663.
19. Chu,W.-C. and Horowitz,J. (1989) Nucleic Acids Res., 17, 7241-7252.
20. Sampson,J. and Uhlenbeck,O.C (1988) Proc. Natl. Acad. Sci. USA, 83, 1033-1037.
21. Sampson,J.R., Behlen,L.B., DiRenzo,A.B. and Uhlenbeck,O.C. (1992) Biochemistry, 31, 4161-4167.
22. Taylor,J.W., Ott,J. and Eckstein,F. (1985) Nucleic Acids Res., 13, 8765-8785.
23. Sanger,F., Coulson,A.R., Barrell,B.G., Smith,A.J.H. and Roe,B.A. (1980) J. Mol. Biol., 143, 161-178.
24. Grodberg, J. and Dunn, J.J. (1988) J. Bacteriol., 170, 1245-1253.
25. Bruce,G.A. and Uhlenbeck,O.C. (1982) Biochemistry, 21, 855-861.
26. Shaw,D. (1976) Fourier Transform NMR Spectroscopy. Elsevier, New York, NY, p. 179.
27. Liu,H., Kessler,J., Peterson,R. and Musier-Forsyth,K. (1995) Biochemistry 34, 9795-9800.
28. Horowitz,J., Ou,C.-N., Ishaq,M., Ofengand,J. and Bierbaum,J. (1974) J. Mol. Biol., 88, 301-312.
29. Ofengand,J., Bierbaum,J., Horowitz,J., Ou,C.-N. and Ishaq,M. (1974) J. Mol. Biol., 88, 313-325.
30. Hardin,C.C., Gollnick,P. Kallenbach,N.R., Cohn,M. and Horowitz,J. (1986) Biochemistry, 25, 5699-5709.
31. Hardin,C.C., Gollnick,P and Horowitz,J. (1988) Biochemistry, 27, 487-495.
32. Chu,W.-C., Feiz,V. Derrick,W.B. and Horowitz,J. (1992) J. Mol. Biol., 227, 1164-1172.
33. Chu,W.-C., Kintanar,A. and Horowitz,J. (1992) J. Mol. Biol., 227, 1173-1181.
34. Rould,M.A., Perona,J.J., Söll,D. and Steitz,T.A. (1989) Science, 246, 1135-1142.
35. Rould,M.A., Perona,J.J. and Steitz,T.A. (1991) Nature, 352, 213-218.
36. Mizuno,H. and Sundaralingam,M. (1978) Nucleic Acids Res., 5, 4451-4461.
37. Limmer,S. (1997) Prog. Nucleic Acid Res. Mol. Biol., 57, 1-39.
38. Moras,D., Dumas, P. and Westhof,E. (1986) In van Knippenberg,P.H. and Hilbers,C.W. (eds), Structure and Dynamics of RNA. Plenum Press, New York, NY, pp. 113-124.
39. Kim,S.H., Suddath,F.L., Quigley,G.J., McPherson,A., Sussman,J.L., Wang,A.H.J., Seeman,N.C. and Rich,A. (1974) Science, 185, 435-440.
40. Robertus,J.D., Ladner,J.E. Finch, J.T., Rhodes, D., Brown, R.S., Clark,B.F.C. and Klug,A. (1974) Nature, 250, 546-551.
41. Limmer,S., Reif,B., Ott,G., Arnold,L. and Sprinzl,M. (1996) FEBS Lett., 385, 15-20.
42. Ramos,A. and Varani,G. (1997) Nucleic Acids Res., 25, 2083-2090.