Functional annotation of class I Lysyl-tRNA synthetase phylogeny indicates a limited role for gene transfer

Journal of Bacteriology

Volumn 184, Issue 16, 2002, Pages 4594-4600

  Ambrogelly, Alexandre ^a   Korencic, Dragana ^a   Ibba, Michael ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; LYSINE TRANSFER RNA LIGASE; TRANSFER RNA;

ANTICODON; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; ESCHERICHIA COLI; GENE TRANSFER; GENETIC ANALYSIS; GRAM NEGATIVE BACTERIUM; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PYROCOCCUS; SPIROCHETE;

ACYLATION; ANTICODON; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; LYSINE-TRNA LIGASE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; RECOMBINANT PROTEINS; RNA, TRANSFER, AMINO ACYL; SEQUENCE HOMOLOGY, NUCLEIC ACID; SUBSTRATE SPECIFICITY;

ALPHAPROTEOBACTERIA; ARCHAEA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; EUKARYOTA; NEGIBACTERIA; PROKARYOTA; PYROCOCCUS; SPIROCHAETALES;

EID: 0036330799     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.16.4594-4600.2002     Document Type: Article

References (34)

1. Structural and functional considerations of the aminoacylation reaction
2. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
3. Complete genome sequence of the methanogenic archaeon. Methanococcus jannaschii
4. tRNA anticodon recognition and specification within subclass IIb aminoacyl tRNA synthetases
5. Aminoacyl-tRNA synthetases
6. Cysteinyl-tRNA synthetase: Determination of the last E. coli aminoacyl-tRNA synthetase primary structure
7. Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs
8. Lys
9. The adaptor hypothesis revisited
10. Archaeal-type lysyl-tRNA synthetase in the Lyme disease spirochete Borrelia burgdorferi
11. Aminoacyl-tRNA synthesis: Divergent routes to a common goal
12. Substrate recognition by class I lysyl-tRNA synthetases: A molecular basis for gene displacement
13. A euryarchaeal lysyl-tRNA synthetase: Resemblance to class I synthetases
14. Quality control mechanisms during translation
15. Aminoacyl-tRNA synthesis
16. Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation
17. Cys by a genome that lacks the normal cysteine-tRNA synthetase
18. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
19. Recognition of cognate transfer RNA by the 30S ribosomal subunit
20. Structure-based phylogeny of class IIa tRNA synthetases in relation to an unusual biochemistry
21. Aminoacyl-tRNA synthetases: Potential markers of genetic code development
22. Genetic code origins: tRNAs older than their synthetases?
23. Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: Functional analysis and comparative genomics
24. Context-dependent anticodon recognition by class I lysyl-tRNA synthetases
25. One polypeptide with two aminoacyl-tRNA synthetase activities
26. Lys.3 by human lysyl-tRNA synthetase is dependent on covalent continuity between the acceptor stem and the anticodon domain
27. Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment
28. Functional convergence of two lysyl-tRNA synthetases with unrelated topologies
29. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
30. Domainspecific recruitment of amide amino acids for protein synthesis
31. Transfer RNA as a cofactor coupling amino acid synthesis with that of protein
32. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
33. Evolution of aminoacyl-tRNA synthetases-analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events