Differential modes of transfer RNASer recognition in Methanosarcina barkeri

Journal of Biological Chemistry

Volumn 279, Issue 47, 2004, Pages 48780-48786

  Korencic, Dragana ^a   Polycarpo, Carla ^a   Weygand Durasevic, Ivana ^b,c   Söll, Dieter ^a  

^a YALE UNIVERSITY   (United States)

^b UNIVERSITY OF ZAGREB   (Croatia)

^c RUDER BO KOVI INSTITUTE   (Croatia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIOCHEMISTRY; ENZYMES; METHANOGENS; REACTION KINETICS;

METHANOGENIC ARCHAEA; NUCLEOTIDES; SERYLATION;

RNA;

BACTERIAL ENZYME; BACTERIAL RNA; SERINE; SERINE TRANSFER RNA LIGASE; TRANSFER RNA;

AMINO ACID SEQUENCE; ANTICODON; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME MECHANISM; METHANOSARCINA BARKERI; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; RNA ANALYSIS; RNA TRANSCRIPTION; SEQUENCE HOMOLOGY;

BASE SEQUENCE; CLONING, MOLECULAR; EVOLUTION, MOLECULAR; KINETICS; METHANOSARCINA BARKERI; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEIC ACID CONFORMATION; RNA, TRANSFER; RNA, TRANSFER, SER; SERINE; SERINE-TRNA LIGASE;

ARCHAEA; BACTERIA (MICROORGANISMS); METHANOSARCINA; METHANOSARCINA BARKERI;

EID: 10344236052     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M408753200     Document Type: Article

References (47)

1. Giege, R., Sissler, M., and Florentz, C. (1998) Nucleic Acids Res. 26, 5017-5035
2. Pallanck, L., Pak, M., and Schulman, L. H. (1995) in tRNA: Structure, Biosynthesis, and Function (Söll, D., and RajBhandary, U. L., eds) pp. 371-394, American Society of Microbiology, Washington, DC
3. McClain, W. H. (1993) J. Mol. Biol. 234, 257-280
4. McClain, W. H. (1993) FASEB J. 7, 72-78
5. Saks, M. E., Sampson, J. R., and Abelson, J. N. (1994) Science 263, 191-197
6. Normanly, J., Ollick, T., and Abelson, J. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 5680-5684
7. Biou, V., Yaremchuk, A., Tukalo, M., and Cusack, S. (1994) Science 263, 1404-1410
8. Soma, A., Uchiyama, K., Sakamoto, T., Maeda, M., and Himeno, H. (1999) J. Mol. Biol. 293, 1029-1038
9. Asahara, H., Himeno, H., Tamura, K., Hasegawa, T., Watanabe, K., and Shimizu, M. (1993) J. Mol. Biol. 231, 219-229
10. Normanly, J., Ogden, R. C., Horvath, S. J., and Abelson, J. (1986) Nature 321, 213-219
11. McClain, W. H., and Foss, K. (1988) Science 241, 1804-1807
12. Sprinzl, M., Horn, C., Brown, M., Ioudovitch, A., and Steinberg, S. (1998) Nucleic Acids Res. 26, 148-153
13. Breitschopf, K., Achsel, T., Busch, K., and Gross, H. (1995) Nucleic Acids Res. 23, 3633-3637
14. Himeno, H., Hasegawa, T., Ueda, T., Watanabe, K., and Shimizu, M. (1990) Nucleic Acids Res. 18, 6815-6819
15. Normanly, J., Masson, J. M., Kleina, L. G., Abelson, J., and Miller, J. H. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 6548-6552
16. Schatz, D., Leberman, R., and Eckstein, F. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 6132-6136
17. Sampson, J. R., and Saks, M. E. (1993) Nucleic Acids Res. 21, 4467-4475
18. Saks, M. E., and Sampson, J. R. (1996) EMBO J. 15, 2843-2849
19. Dock-Bregeon, A. C., Garcia, A., Giege, R., and Moras, D. (1990) Eur. J. Biochem. 188, 283-290
20. Weygand-Durasevic, I., Ban, N., Jahn, D., and Söll, D. (1993) Eur. J. Biochem. 214, 869-877
21. Weygand-Durasevic, I., Nalaskowska, M., and Söll, D. (1994) J. Bacteriol. 176, 232-239
22. Soma, A., Kumagai, B., Nishikawa, K., and Himeno, H. (1996) J. Mol. Biol. 263, 707-714
23. Himeno, H., Yoshida, S., Soma, A., and Nishikawa, K. (1997) J. Mol. Biol. 268, 704-711
24. Achsel, T., and Gross, H. J. (1993) EMBO J. 12, 3333-3338
25. Breitschopf, K., and Gross, H. J. (1994) EMBO J. 13, 3166-3167
26. Wu, X. Q., and Gross, H. J. (1993) Nucleic Acids Res. 21, 5589-5594
27. Asahara, H., Himeno, H., Tamura, K., Nameki, N., Hasegawa, T., and Shimizu, M. (1994) J. Mol. Biol. 236, 738-748
28. Lenhard, B., Orellana, O., Ibba, M., and Weygand-Durasevic, I. (1999) Nucleic Acids Res. 27, 721-729
29. Yokogawa, T., Watanabe, Y., Kumazawa, Y., Ueda, T., Hirao, I., Miura, K., and Watanabe, K. (1991) Nucleic Acids Res. 19, 6101-6105
30. Shimada, N., Suzuki, T., and Watanabe, K. (2001) J. Biol. Chem. 276, 46770-46778
31. Ueda, T., Yotsumoto, Y., Ikeda, K., and Watanabe, K. (1992) Nucleic Acids Res. 20, 2217-2222
32. Yokogawa, T., Shimada, N., Takeuchi, N., Benkowski, L., Suzuki, T., Omori, A., Ueda, T., Nishikawa, K., Spremulli, L. L., and Watanabe, K. (2000) J. Biol. Chem. 275, 19913-19920
33. Woese, C. R., Olsen, G. J., Ibba, M., and Söll, D. (2000) Microbiol. Mol. Biol. Rev. 64, 202-236
34. Kim, H. S., Vothknecht, U., Hedderich, R., Celic, I., and Söll, D. (1998) J. Bacteriol. 180, 6446-6449
35. Price, S., Cusack, S., Borel, F., Berthet-Colominas, C., and Leberman, R. (1993) FEBS Lett. 324, 167-170
36. Korencic, D., Ahel, I., and Söll, D. (2002) Food Technol. Biotechnol. 40, 255-260
37. Ahel, I., Stathopoulos, C., Ambrogelly, A., Sauerwald, A., Toogood, H., Hartsch, T., and Söll, D. (2002) J. Biol. Chem. 277, 34743-34748
38. Salazar, J. C., Zuniga, R., Lefimil, C., Söll, D., and Orellana, O. (2001) FEBS Lett. 491, 257-260
39. Takeuchi, N., Vial, L., Panvert, M., Schmitt, E., Watanabe, K., Mechulam, Y., and Blanquet, S. (2001) J. Biol. Chem. 276, 20064-20068
40. Nazarenko, I. A., Peterson, E. T., Zakharova, O. D., Lavrik, O. I., and Uhlenbeck, O. C. (1992) Nucleic Acids Res. 20, 475-478
41. Himeno, H., Hasegawa, T., Asahara, H., Tamura, K., and Shimizu, M. (1991) Nucleic Acids Res. 19, 6379-6382
42. Böck, A., Thanbichler, M., Rother, M., and Resch, A. (2004) in Aminoacyl-tRNA Synthetases, (Ibba, M., Francklyn, C. S., and Cusack, S., eds) pp. 320-327, Landes Bioscience, Georgetown, TX
43. Fechter, P., Rudinger-Thirion, J., Tukalo, M., and Giege, R. (2001) Eur. J. Biochem. 268, 761-767
44. Ruan, B., Nakano, H., Tanaka, M., Mills, J. A., DeVito, J. A., Low, K. B., Battista, J. R., and Söll, D. (2004) J. Bacteriol. 186, 8-14
45. Breitschopf, K., and Gross, H. J. (1996) Nucleic Acids Res. 24, 405-410
46. Yaremchuk, A., Kriklivyi, I., Tukalo, M., and Cusack, S. (2002) EMBO J. 21, 3829-3840
47. Cusack, S., Yaremchuk, A., and Tukalo, M. (1996) EMBO J. 15, 2834-2842