Alternative designs for construction of the class II transfer RNA tertiary core

RNA

Volumn 6, Issue 11, 2000, Pages 1585-1596

  Nissan, T Amar ^a   Perona, John J ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Aminoacyl tRNA synthetases; Indirect readout; RNA engineering; RNA structure; tRNA identity

Indexed keywords

GLUTAMINE; GLUTAMINE TRANSFER RNA LIGASE; NUCLEOTIDE; PYRIMIDINE DERIVATIVE; SYNTHETASE; TRANSFER RNA; URIDINE;

AMINOACYLATION; ARTICLE; BASE PAIRING; CHROMOSOME ARM; CONTROLLED STUDY; ESCHERICHIA COLI; GENE INSERTION; GENE LOCUS; MOLECULAR STABILITY; NONHUMAN; PRIORITY JOURNAL; REACTION ANALYSIS; RNA SEQUENCE; RNA STRUCTURE; RNA SYNTHESIS; SEQUENCE ANALYSIS; THERMAL ANALYSIS;

AMINO ACYL-TRNA SYNTHETASES; BASE SEQUENCE; ESCHERICHIA COLI; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HYBRIDIZATION; PROTEIN CONFORMATION; RNA, BACTERIAL; RNA, TRANSFER; RNA, TRANSFER, GLN; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, RNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; THERMODYNAMICS;

ESCHERICHIA COLI; PROKARYOTA;

EID: 0033730646     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838200001126     Document Type: Article

References (48)

1. Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure
2. The 3 Å crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination
3. The 2.9 Å crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser)
4. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs
5. tRNA(Pro) anticodon recognition by Thermus thermophilus prolyl-tRNA synthetase
6. Identity switches between tRNAs aminoacylated by class I glutaminyl- and class II aspartyl-tRNA synthetases
7. tRNA mimics
8. Universal rules and idiosyncratic features in tRNA identity
9. The crystal structure of phenylalanyl-tRNA synthetase from Thermus thermophilus complexed with cognate tRNA(Phe)
10. OmpT encodes the Escherichia coli outer membrane protease that cleaves T7 RNA polymerase during purification
11. Recognition of bases in Escherichia coli tRNA(Gln) by glutaminyl-tRNA synthetase: A complete identity set
12. Escherichia coli glutaminyl-tRNA synthetase
13. Glutaminyl-tRNA synthetase of Escherichia coli
14. Transfer RNA-dependent cognate amino acid recognition by an aminoacyl-tRNA synthetase
15. Interactions between tRNA identity nucleotides and their recognition sites in glutaminyl-tRNA synthetase determine the cognate amino acid affinity of the enzyme
16. Modeling the tertiary interactions in the eukaryotic selenocysteine tRNA
17. Anticodon and acceptor stem nucteotides in tRNA(Gln) are major recognition elements for E. coli glutaminyl-tRNA synthetase
18. A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase
19. Three dimensional tertiary structure of yeast phenylalanine transfer RNA
20. Genetic analysis of functional connectivity between substrate recognition domains of Escherichia coli glutaminyl-tRNA synthetase
21. The importance of tRNA backbone-mediated interactions with synthetase for aminoacylation
22. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
23. Crystal structure of yeast tRNA(Asp)
24. An engineered class I transfer RNA with a class II tertiary fold
25. The crystal structure of Cys-tRNA(Cys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA
26. 2/(Gln) and its use in crystallization of the glutaminyl-tRNA synthetase-tRNA(Gln) complex
27. T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates
28. How glutaminyl-tRNA synthetase selects glutamine
29. Towards an understanding of protein-DNA recognition
30. Structure of yeast phenylalanine tRNA at 3 Å resolution
31. Discrimination among tRNAs intermediate in glutamate and glutamine acceptor identity
32. Functional communication in the recognition of tRNA by Escherichia coli glutaminyl-tRNA synthetase
33. Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 ∅ resolution
34. The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site
35. Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases
36. Aminoacyl-tRNA synthetases optimize both cognate tRNA recognition and discrimination against noncognate tRNAs
37. Functional connectivity between tRNA binding domains in glutaminyl-tRNA synthetase
38. Insights into editing from an Ile-tRNA synthetase structure with tRNA(ile) and mupirocin
39. Unique recognition style of tRN(Leu) by Haloferax volcanii leucyl-tRNA synthetase
40. Compilation of tRNA sequences and sequences of tRNA genes
41. Compilation of tRNA sequences and sequences of tRNA genes (20 December 1999)
42. Structural rules and conformational compensations in the tRNA L-form
43. tRNA leucine identity and recognition sets
44. Dimerization of double-stranded RNA possessing a 3'-overhanging single-stranded end
45. Three dimensional structure of Escherichia coli initiator tRNA(fMet)
46. 1/(Tyr) (Escherichia coli)