-
1
-
-
0023929283
-
Hydrostatic versus increased permeability pulmonary edema: Diagnosis based on radiographic criteria in critically ill patients
-
Aberle DR, Wiener-Kronish JP, Webb WR, and Matthay MA. Hydrostatic versus increased permeability pulmonary edema: diagnosis based on radiographic criteria in critically ill patients. Radiology 168: 73-79, 1988.
-
(1988)
Radiology
, vol.168
, pp. 73-79
-
-
Aberle, D.R.1
Wiener-Kronish, J.P.2
Webb, W.R.3
Matthay, M.A.4
-
2
-
-
0035241690
-
Mass spectrometry in proteomics
-
Aebersold R and Goodlett DR. Mass spectrometry in proteomics. Chem Rev 101: 269-295, 2001.
-
(2001)
Chem Rev
, vol.101
, pp. 269-295
-
-
Aebersold, R.1
Goodlett, D.R.2
-
3
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold R and Mann M. Mass spectrometry-based proteomics. Nature 422: 198-207, 2003.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
4
-
-
0023430927
-
Internal amino acid sequence analysis of proteins separated by one- or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose
-
Aebersold RH, Leavitt J, Saavedra RA, Hood LE, and Kent SB. Internal amino acid sequence analysis of proteins separated by one- or two-dimensional gel electrophoresis after in situ protease digestion on nitrocellulose. Proc Natl Acad Sci USA 84: 6970-6974, 1987.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 6970-6974
-
-
Aebersold, R.H.1
Leavitt, J.2
Saavedra, R.A.3
Hood, L.E.4
Kent, S.B.5
-
5
-
-
0034405427
-
Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry
-
Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, and Lamond AI. Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry. EMBO J 19: 6569-6581, 2000.
-
(2000)
EMBO J
, vol.19
, pp. 6569-6581
-
-
Ajuh, P.1
Kuster, B.2
Panov, K.3
Zomerdijk, J.C.4
Mann, M.5
Lamond, A.I.6
-
6
-
-
0017721398
-
High resolution two-dimensional electrophoresis of human plasma proteins
-
Anderson L and Anderson NG. High resolution two-dimensional electrophoresis of human plasma proteins. Proc Natl Acad Sci USA 74: 5421-5425, 1977.
-
(1977)
Proc Natl Acad Sci USA
, vol.74
, pp. 5421-5425
-
-
Anderson, L.1
Anderson, N.G.2
-
7
-
-
0001644020
-
The human plasma proteome: History, character, and diagnostic prospects
-
Anderson NL and Anderson NG. The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics 1: 845-867, 2002.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
8
-
-
0035253691
-
A multidimensional electrospray MS-based approach to phosphopeptide mapping
-
Annan RS, Huddleston MJ, Verma R, Deshaies RJ, and Carr SA. A multidimensional electrospray MS-based approach to phosphopeptide mapping. Anal Chem 73: 393-404, 2001.
-
(2001)
Anal Chem
, vol.73
, pp. 393-404
-
-
Annan, R.S.1
Huddleston, M.J.2
Verma, R.3
Deshaies, R.J.4
Carr, S.A.5
-
9
-
-
0036463388
-
Selective detection of membrane proteins without antibodies: A mass spectrometric version of the Western blot
-
Arnott D, Kishiyama A, Luis EA, Ludlum SG, Marsters JC Jr, and Stults JT. Selective detection of membrane proteins without antibodies: a mass spectrometric version of the Western blot. Mol Cell Proteomics 1: 148-156, 2002.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 148-156
-
-
Arnott, D.1
Kishiyama, A.2
Luis, E.A.3
Ludlum, S.G.4
Marsters Jr., J.C.5
Stults, J.T.6
-
10
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, and Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29, 2000.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
11
-
-
0036281017
-
2-adrenergic agonists achieve therapeutic levels in the pulmonary edema fluid of ventilated patients with acute respiratory failure
-
2-adrenergic agonists achieve therapeutic levels in the pulmonary edema fluid of ventilated patients with acute respiratory failure. Intensive Care Med 28: 705-711, 2002.
-
(2002)
Intensive Care Med
, vol.28
, pp. 705-711
-
-
Atabai, K.1
Ware, L.B.2
Snider, M.E.3
Koch, P.4
Daniel, B.5
Nuckton, T.J.6
Matthay, M.A.7
-
12
-
-
0034855204
-
Prefractionation of protein samples for proteome analysis using reversed-phase high-performance liquid chromatography
-
Badock V, Steinhusen U, Bommert K, and Otto A. Prefractionation of protein samples for proteome analysis using reversed-phase high-performance liquid chromatography. Electrophoresis 22: 2856-2864, 2001.
-
(2001)
Electrophoresis
, vol.22
, pp. 2856-2864
-
-
Badock, V.1
Steinhusen, U.2
Bommert, K.3
Otto, A.4
-
13
-
-
0035010171
-
Increased nitric oxide metabolites in exhaled breath condensate after exposure to tobacco smoke
-
Balint B, Donnelly LE, Hanazawa T, Kharitonov SA, and Barnes PJ. Increased nitric oxide metabolites in exhaled breath condensate after exposure to tobacco smoke. Thorax 56: 456-461, 2001.
-
(2001)
Thorax
, vol.56
, pp. 456-461
-
-
Balint, B.1
Donnelly, L.E.2
Hanazawa, T.3
Kharitonov, S.A.4
Barnes, P.J.5
-
14
-
-
0035865397
-
Our genome unveiled
-
Baltimore D. Our genome unveiled. Nature 409: 814-816, 2001.
-
(2001)
Nature
, vol.409
, pp. 814-816
-
-
Baltimore, D.1
-
15
-
-
0037294003
-
Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes
-
Bauer A and Kuster B. Affinity purification-mass spectrometry. Powerful tools for the characterization of protein complexes. Eur J Biochem 270: 570-578, 2003.
-
(2003)
Eur J Biochem
, vol.270
, pp. 570-578
-
-
Bauer, A.1
Kuster, B.2
-
16
-
-
0029841119
-
Matrix-assisted laser desorption ionization mass-spectrometry of proteins
-
Beavis RC and Chait BT. Matrix-assisted laser desorption ionization mass-spectrometry of proteins. Methods Enzymol 270: 519-551, 1996.
-
(1996)
Methods Enzymol
, vol.270
, pp. 519-551
-
-
Beavis, R.C.1
Chait, B.T.2
-
17
-
-
0019404355
-
Plasma proteins of the bronchoalveolar surface of the lungs of smokers and nonsmokers
-
Bell DY, Haseman JA, Spock A, McLennan G, and Hook GE. Plasma proteins of the bronchoalveolar surface of the lungs of smokers and nonsmokers. Am Rev Respir Dis 124: 72-79, 1981.
-
(1981)
Am Rev Respir Dis
, vol.124
, pp. 72-79
-
-
Bell, D.Y.1
Haseman, J.A.2
Spock, A.3
McLennan, G.4
Hook, G.E.5
-
18
-
-
0018749959
-
Pulmonary alveolar proteinosis: Analysis of airway and alveolar proteins
-
Bell DY and Hook GE. Pulmonary alveolar proteinosis: analysis of airway and alveolar proteins. Am Rev Respir Dis 119: 979-990, 1979.
-
(1979)
Am Rev Respir Dis
, vol.119
, pp. 979-990
-
-
Bell, D.Y.1
Hook, G.E.2
-
19
-
-
0033915670
-
Background-free, high sensitivity staining of proteins in one- and two-dimensional sodium dodecyl sulfate-polyacrylamide gels using a luminescent ruthenium complex
-
Berggren K, Chernokalskaya E, Steinberg TH, Kemper C, Lopez MF, Diwu Z, Haugland RP, and Patton WF. Background-free, high sensitivity staining of proteins in one- and two-dimensional sodium dodecyl sulfate-polyacrylamide gels using a luminescent ruthenium complex. Electrophoresis 21: 2509-2521, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 2509-2521
-
-
Berggren, K.1
Chernokalskaya, E.2
Steinberg, T.H.3
Kemper, C.4
Lopez, M.F.5
Diwu, Z.6
Haugland, R.P.7
Patton, W.F.8
-
20
-
-
0344329881
-
Dual channel imaging of two-dimensional electropherograms in Bacillus subtilis
-
Bernhardt J, Buttner K, Scharf C, and Hecker M. Dual channel imaging of two-dimensional electropherograms in Bacillus subtilis. Electrophoresis 20: 2225-2240, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 2225-2240
-
-
Bernhardt, J.1
Buttner, K.2
Scharf, C.3
Hecker, M.4
-
21
-
-
0023804303
-
Contributions of mass spectrometry to peptide and protein structure
-
Biemann K. Contributions of mass spectrometry to peptide and protein structure. Biomed Environ Mass Spectrom 16: 99-111, 1988.
-
(1988)
Biomed Environ Mass Spectrom
, vol.16
, pp. 99-111
-
-
Biemann, K.1
-
22
-
-
0023399896
-
Characterization by tandem mass spectrometry of structural modifications in proteins
-
Biemann K and Scoble HA. Characterization by tandem mass spectrometry of structural modifications in proteins. Science 237: 992-998, 1987.
-
(1987)
Science
, vol.237
, pp. 992-998
-
-
Biemann, K.1
Scoble, H.A.2
-
23
-
-
0003128903
-
Electrospray-ionization quadrupole ion-trap mass spectrometry
-
edited by Cole RB. New York: Wiley & Sons
-
Bier ME and Schwartz JC. Electrospray-ionization quadrupole ion-trap mass spectrometry. In: Electrospray Ionization, edited by Cole RB. New York: Wiley & Sons, 1997, p. 235-289.
-
(1997)
Electrospray Ionization
, pp. 235-289
-
-
Bier, M.E.1
Schwartz, J.C.2
-
24
-
-
0027763435
-
A nonlinear wide-range immobilized pH gradient for two-dimensional electrophoresis and its definition in a relevant pH scale
-
Bjellqvist B, Pasquali C, Ravier F, Sanchez JC, and Hochstrasser D. A nonlinear wide-range immobilized pH gradient for two-dimensional electrophoresis and its definition in a relevant pH scale. Electrophoresis 14: 1357-1365, 1993.
-
(1993)
Electrophoresis
, vol.14
, pp. 1357-1365
-
-
Bjellqvist, B.1
Pasquali, C.2
Ravier, F.3
Sanchez, J.C.4
Hochstrasser, D.5
-
25
-
-
0032784646
-
Proteomics: Quantitative and physical mapping of cellular proteins
-
Blackstock WP and Weir MP. Proteomics: quantitative and physical mapping of cellular proteins. Trends Biotechnol 17: 121-127, 1999.
-
(1999)
Trends Biotechnol
, vol.17
, pp. 121-127
-
-
Blackstock, W.P.1
Weir, M.P.2
-
26
-
-
0028282665
-
Isolation and identification of plasma membrane populations
-
Bradley ME, Lambert RW, and Mircheff AK. Isolation and identification of plasma membrane populations. Methods Enzymol 228: 432-448, 1994.
-
(1994)
Methods Enzymol
, vol.228
, pp. 432-448
-
-
Bradley, M.E.1
Lambert, R.W.2
Mircheff, A.K.3
-
27
-
-
0036463713
-
Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor
-
Brooks DJ and Fresco JR. Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor. Mol Cell Proteomics 1: 125-131, 2002.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 125-131
-
-
Brooks, D.J.1
Fresco, J.R.2
-
28
-
-
0030046793
-
Characterization of protein glycosylation by mass spectrometry
-
Burlingame AL. Characterization of protein glycosylation by mass spectrometry. Curr Opin Biotechnol 7: 4-10, 1996.
-
(1996)
Curr Opin Biotechnol
, vol.7
, pp. 4-10
-
-
Burlingame, A.L.1
-
30
-
-
0031304362
-
Molecular imaging of biological samples: Localization of peptides and proteins using MALDI-TOF MS
-
Caprioli RM, Farmer TB, and Gile J. Molecular imaging of biological samples: localization of peptides and proteins using MALDI-TOF MS. Anal Chem 69: 4751-4760. 1997.
-
(1997)
Anal Chem
, vol.69
, pp. 4751-4760
-
-
Caprioli, R.M.1
Farmer, T.B.2
Gile, J.3
-
31
-
-
0032247495
-
Exhaled breath condensate isoprostanes are elevated in patients with acute lung injury or ARDS
-
Carpenter CT, Price PV, and Christman BW. Exhaled breath condensate isoprostanes are elevated in patients with acute lung injury or ARDS. Chest 114: 1653-1659, 1998.
-
(1998)
Chest
, vol.114
, pp. 1653-1659
-
-
Carpenter, C.T.1
Price, P.V.2
Christman, B.W.3
-
32
-
-
0032948126
-
2D protein electrophoresis: Can it be perfected?
-
Celis JE and Gromov P. 2D protein electrophoresis: can it be perfected? Curr Opin Biotechnol 10: 16-21, 1999.
-
(1999)
Curr Opin Biotechnol
, vol.10
, pp. 16-21
-
-
Celis, J.E.1
Gromov, P.2
-
33
-
-
0032560492
-
Human and mouse proteomic databases: Novel resources in the protein universe
-
Celis JE, Ostergaard M, Jensen NA, Gromova I, Rasmussen HH, and Gromov P. Human and mouse proteomic databases: novel resources in the protein universe. FEBS Lett 430: 64-72, 1998.
-
(1998)
FEBS Lett
, vol.430
, pp. 64-72
-
-
Celis, J.E.1
Ostergaard, M.2
Jensen, N.A.3
Gromova, I.4
Rasmussen, H.H.5
Gromov, P.6
-
34
-
-
0029612259
-
The human keratinocyte two-dimensional gel protein database (update 1995): Mapping components of signal transduction pathways
-
Celis JE, Rasmussen HH, Gromov P, Olsen E, Madsen P, Leffers H, Honore B, Dejgaard K, Vorum H, Kristensen DB, Østergaard M, Haunsø A, Jensen NA, Celis A, Basse B, Lauridsen JB, Ratz GP, Andersen AH, Walbum E, Kjaergaard I, Anderson I, Puype M, Van Damme J, and Vandekerckhove J. The human keratinocyte two-dimensional gel protein database (update 1995): mapping components of signal transduction pathways. Electrophoresis 16: 2177-2240, 1995.
-
(1995)
Electrophoresis
, vol.16
, pp. 2177-2240
-
-
Celis, J.E.1
Rasmussen, H.H.2
Gromov, P.3
Olsen, E.4
Madsen, P.5
Leffers, H.6
Honore, B.7
Dejgaard, K.8
Vorum, H.9
Kristensen, D.B.10
Østergaard, M.11
Haunsø, A.12
Jensen, N.A.13
Celis, A.14
Basse, B.15
Lauridsen, J.B.16
Ratz, G.P.17
Andersen, A.H.18
Walbum, E.19
Kjaergaard, I.20
Anderson, I.21
Puype, M.22
Van Damme, J.23
Vandekerckhove, J.24
more..
-
35
-
-
0035567107
-
Identification of GlcNAcylation sites of peptides and α-crystallin using Q-TOF mass spectrometry
-
Chalkley RJ and Burlingame AL. Identification of GlcNAcylation sites of peptides and α-crystallin using Q-TOF mass spectrometry. J Am Soc Mass Spectrom 12: 1106-1113, 2001.
-
(2001)
J Am Soc Mass Spectrom
, vol.12
, pp. 1106-1113
-
-
Chalkley, R.J.1
Burlingame, A.L.2
-
36
-
-
0035976790
-
Augmented expression of peroxiredoxin I in lung cancer
-
Chang JW, Jeon HB, Lee JH, Yoo JS, Chun JS, Kim JH, and Yoo YJ. Augmented expression of peroxiredoxin I in lung cancer. Biochem Biophys Res Commun 289: 507-512, 2001.
-
(2001)
Biochem Biophys Res Commun
, vol.289
, pp. 507-512
-
-
Chang, J.W.1
Jeon, H.B.2
Lee, J.H.3
Yoo, J.S.4
Chun, J.S.5
Kim, J.H.6
Yoo, Y.J.7
-
37
-
-
0036747311
-
Direct profiling and imaging of peptides and proteins from mammalian cells and tissue sections by mass spectrometry
-
Chaurand P and Caprioli RM. Direct profiling and imaging of peptides and proteins from mammalian cells and tissue sections by mass spectrometry. Electrophoresis 23: 3125-3135, 2002.
-
(2002)
Electrophoresis
, vol.23
, pp. 3125-3135
-
-
Chaurand, P.1
Caprioli, R.M.2
-
38
-
-
0036802247
-
Imaging mass spectrometry: A new tool to investigate the spatial organization of peptides and proteins in mammalian tissue sections
-
Chaurand P, Schwartz SA, and Caprioli RM. Imaging mass spectrometry: a new tool to investigate the spatial organization of peptides and proteins in mammalian tissue sections. Curr Opin Chem Biol 6: 676-681, 2002.
-
(2002)
Curr Opin Chem Biol
, vol.6
, pp. 676-681
-
-
Chaurand, P.1
Schwartz, S.A.2
Caprioli, R.M.3
-
39
-
-
0033485653
-
Direct profiling of proteins in biological tissue sections by MALDI mass spectrometry
-
Chaurand P, Stoeckli M, and Caprioli RM. Direct profiling of proteins in biological tissue sections by MALDI mass spectrometry. Anal Chem 71: 5263-5270, 1999.
-
(1999)
Anal Chem
, vol.71
, pp. 5263-5270
-
-
Chaurand, P.1
Stoeckli, M.2
Caprioli, R.M.3
-
40
-
-
0035992398
-
Proteomic analysis of lung adenocarcinoma: Identification of a highly expressed set of proteins in tumors
-
Chen G, Gharib TG, Huang CC, Thomas DG, Shedden KA, Taylor JM, Kardia SL, Misek DE, Giordano TJ, Iannettoni MD, Orringer MB, Hanash SM, and Beer DG. Proteomic analysis of lung adenocarcinoma: identification of a highly expressed set of proteins in tumors. Clin Cancer Res 8: 2298-2305, 2002.
-
(2002)
Clin Cancer Res
, vol.8
, pp. 2298-2305
-
-
Chen, G.1
Gharib, T.G.2
Huang, C.C.3
Thomas, D.G.4
Shedden, K.A.5
Taylor, J.M.6
Kardia, S.L.7
Misek, D.E.8
Giordano, T.J.9
Iannettoni, M.D.10
Orringer, M.B.11
Hanash, S.M.12
Beer, D.G.13
-
41
-
-
0037251554
-
Prognostic value or surfactant proteins A and D in patients with acute lung injury
-
Cheng IW, Ware LB, Greene KE, Nuckton TJ, Eisner MD, and Matthay MA. Prognostic value or surfactant proteins A and D in patients with acute lung injury. Crit Care Med 31: 20-27, 2003.
-
(2003)
Crit Care Med
, vol.31
, pp. 20-27
-
-
Cheng, I.W.1
Ware, L.B.2
Greene, K.E.3
Nuckton, T.J.4
Eisner, M.D.5
Matthay, M.A.6
-
42
-
-
0034852208
-
An introduction to quadrupole-time-of-flight mass spectrometry
-
Chernushevich IV, Loboda AV, and Thomson BA. An introduction to quadrupole-time-of-flight mass spectrometry. J Mass Spectrom 36: 849-865, 2001.
-
(2001)
J Mass Spectrom
, vol.36
, pp. 849-865
-
-
Chernushevich, I.V.1
Loboda, A.V.2
Thomson, B.A.3
-
43
-
-
0030833343
-
Early detection of type III procollagen peptide in acute lung injury. Pathogenetic and prognostic significance
-
Chesnutt AN, Matthay MA, Tibayan FA, and Clark JG, Early detection of type III procollagen peptide in acute lung injury. Pathogenetic and prognostic significance. Am J Respir Crit Care Med 156: 840-845, 1997.
-
(1997)
Am J Respir Crit Care Med
, vol.156
, pp. 840-845
-
-
Chesnutt, A.N.1
Matthay, M.A.2
Tibayan, F.A.3
Clark, J.G.4
-
44
-
-
0033565832
-
Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching
-
Clauser KR, Baker P, and Burlingame AL. Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal Chem 71: 2871-2882, 1999.
-
(1999)
Anal Chem
, vol.71
, pp. 2871-2882
-
-
Clauser, K.R.1
Baker, P.2
Burlingame, A.L.3
-
45
-
-
0029053727
-
Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE
-
Clauser KR, Hall SC, Smith DM, Webb JW, Andrews LE, Tran HM, Epstein LB, and Burlingame AL. Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE. Proc Natl Acad Sci USA 92: 5072-5076, 1995.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 5072-5076
-
-
Clauser, K.R.1
Hall, S.C.2
Smith, D.M.3
Webb, J.W.4
Andrews, L.E.5
Tran, H.M.6
Epstein, L.B.7
Burlingame, A.L.8
-
46
-
-
0034383949
-
The regulation of protein function by multisite phosphorylation-A 25 year update
-
Cohen P. The regulation of protein function by multisite phosphorylation-a 25 year update. Trends Biochem Sci 25: 596-601, 2000.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 596-601
-
-
Cohen, P.1
-
47
-
-
0001268221
-
Fourier transform ion cyclotron resonance spectroscopy
-
Comisarow MB and Marshall AG. Fourier transform ion cyclotron resonance spectroscopy. Chem Phys Lett 25: 282-283, 1974.
-
(1974)
Chem Phys Lett
, vol.25
, pp. 282-283
-
-
Comisarow, M.B.1
Marshall, A.G.2
-
48
-
-
0030905461
-
Comparison of in-gel and on-membrane digestion methods at low to sub-pmol level for subsequent peptide and fragment-ion mass analysis using matrix-assisted laser-desorption/ionization mass spectrometry
-
Courchesne PL, Luethy R, and Patterson SD. Comparison of in-gel and on-membrane digestion methods at low to sub-pmol level for subsequent peptide and fragment-ion mass analysis using matrix-assisted laser-desorption/ionization mass spectrometry. Electrophoresis 18: 369-381, 1997.
-
(1997)
Electrophoresis
, vol.18
, pp. 369-381
-
-
Courchesne, P.L.1
Luethy, R.2
Patterson, S.D.3
-
49
-
-
0033923020
-
Airway surface liquid composition in mice
-
Cowley EA, Govindaraju K, Guilbault C, Radzioch D, and Eidelman DH. Airway surface liquid composition in mice. Am J Physiol Lung Cell Mol Physiol 278: L1213-L1220, 2000.
-
(2000)
Am J Physiol Lung Cell Mol Physiol
, vol.278
-
-
Cowley, E.A.1
Govindaraju, K.2
Guilbault, C.3
Radzioch, D.4
Eidelman, D.H.5
-
50
-
-
0037114968
-
Inhibition of human surfactant protein A function by oxidation intermediates of nitrite
-
Davis IC, Zhu S, Sampson JB, Crow JP, and Matalon S. Inhibition of human surfactant protein A function by oxidation intermediates of nitrite. Free Radic Biol Med 33: 1703-1713, 2002.
-
(2002)
Free Radic Biol Med
, vol.33
, pp. 1703-1713
-
-
Davis, I.C.1
Zhu, S.2
Sampson, J.B.3
Crow, J.P.4
Matalon, S.5
-
51
-
-
0029816451
-
Increased exhalation of hydrogen peroxide in patients with stable and unstable chronic obstructive pulmonary disease
-
Dekhuijzen PN, Aben KK, Dekker I, Aarts LP, Wielders PL, van Herwaarden CL, and Bast A. Increased exhalation of hydrogen peroxide in patients with stable and unstable chronic obstructive pulmonary disease. Am J Respir Crit Care Med 154: 813-816, 1996.
-
(1996)
Am J Respir Crit Care Med
, vol.154
, pp. 813-816
-
-
Dekhuijzen, P.N.1
Aben, K.K.2
Dekker, I.3
Aarts, L.P.4
Wielders, P.L.5
Van Herwaarden, C.L.6
Bast, A.7
-
52
-
-
0035937542
-
Glycoprotein structure determination by mass spectrometry
-
Dell A and Morris HR. Glycoprotein structure determination by mass spectrometry. Science 291: 2351-2356, 2001.
-
(2001)
Science
, vol.291
, pp. 2351-2356
-
-
Dell, A.1
Morris, H.R.2
-
54
-
-
0025391007
-
The use of quantitative two-dimensional gel electrophoresis to analyze changes in alveolar macrophage proteins in humans exposed to ozone
-
Devlin RB and Koren HS. The use of quantitative two-dimensional gel electrophoresis to analyze changes in alveolar macrophage proteins in humans exposed to ozone. Am J Respir Cell Mol Biol 2: 281-288, 1990.
-
(1990)
Am J Respir Cell Mol Biol
, vol.2
, pp. 281-288
-
-
Devlin, R.B.1
Koren, H.S.2
-
55
-
-
0042367739
-
Point: Proteomic patterns in biological fluids: Do they represent the future of cancer diagnostics?
-
Diamandis EP. Point: proteomic patterns in biological fluids: do they represent the future of cancer diagnostics? Clin Chem 49: 1272-1275, 2003.
-
(2003)
Clin Chem
, vol.49
, pp. 1272-1275
-
-
Diamandis, E.P.1
-
56
-
-
0029914830
-
Pulmonary edema in a woman following fetal surgery
-
DiFederico EM, Harrison M, and Matthay MA. Pulmonary edema in a woman following fetal surgery. Chest 109: 1114-1117, 1996.
-
(1996)
Chest
, vol.109
, pp. 1114-1117
-
-
DiFederico, E.M.1
Harrison, M.2
Matthay, M.A.3
-
57
-
-
0030756418
-
Surfactant proteins-A and -B are elevated in plasma of patients with acute respiratory failure
-
Doyle IR, Bersten AD, and Nicholas TE. Surfactant proteins-A and -B are elevated in plasma of patients with acute respiratory failure. Am J Respir Crit Care Med 156: 1217-1229, 1997.
-
(1997)
Am J Respir Crit Care Med
, vol.156
, pp. 1217-1229
-
-
Doyle, I.R.1
Bersten, A.D.2
Nicholas, T.E.3
-
58
-
-
0020085946
-
How many proteins ate there in a typical mammalian cell?
-
Duncan R and McConkey EH. How many proteins ate there in a typical mammalian cell? Clin Chem 28: 749-755, 1982.
-
(1982)
Clin Chem
, vol.28
, pp. 749-755
-
-
Duncan, R.1
McConkey, E.H.2
-
59
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng JK, McCormack AL, and Yates JR. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5: 976-989, 1994.
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
60
-
-
10544227309
-
Identification of cytokine-regulated proteins in normal and malignant cells by the combination of two-dimensional polyacrylamide gel electrophoresis, mass spectrometry. Edman degradation and immunoblotting and approaches to the analysis of their functional roles
-
Epstein LB, Smith DM, Matsui NM, Tran HM, Sullivan C, Raineri I, Burlingame AL, Clauser KR, Hall SC, and Andrews LE. Identification of cytokine-regulated proteins in normal and malignant cells by the combination of two-dimensional polyacrylamide gel electrophoresis, mass spectrometry. Edman degradation and immunoblotting and approaches to the analysis of their functional roles. Electrophoresis 17: 1655-1670, 1996.
-
(1996)
Electrophoresis
, vol.17
, pp. 1655-1670
-
-
Epstein, L.B.1
Smith, D.M.2
Matsui, N.M.3
Tran, H.M.4
Sullivan, C.5
Raineri, I.6
Burlingame, A.L.7
Clauser, K.R.8
Hall, S.C.9
Andrews, L.E.10
-
61
-
-
0025616122
-
Detectors
-
edited by McCloskey JA. San Diego, CA: Academic
-
Evans S. Detectors. In: Mass Spectrometry, edited by McCloskey JA. San Diego, CA: Academic, 1990, p. 61-86.
-
(1990)
Mass Spectrometry
, pp. 61-86
-
-
Evans, S.1
-
62
-
-
0024438708
-
Electrospray ionization for mass spectrometry of large biomolecules
-
Fenn JB, Mann M, Meng CK, Wong SF, and Whitehouse CM. Electrospray ionization for mass spectrometry of large biomolecules. Science 246: 64-71, 1989.
-
(1989)
Science
, vol.246
, pp. 64-71
-
-
Fenn, J.B.1
Mann, M.2
Meng, C.K.3
Wong, S.F.4
Whitehouse, C.M.5
-
63
-
-
0037442649
-
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
-
Fenyo D and Beavis RC. A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal Chem 75: 768-774, 2003.
-
(2003)
Anal Chem
, vol.75
, pp. 768-774
-
-
Fenyo, D.1
Beavis, R.C.2
-
64
-
-
0035252854
-
2D or not 2D. Two-dimensional gel electrophoresis
-
Fey SJ and Larsen PM. 2D or not 2D. Two-dimensional gel electrophoresis. Curr Opin Chem Biol 5: 26-33, 2001.
-
(2001)
Curr Opin Chem Biol
, vol.5
, pp. 26-33
-
-
Fey, S.J.1
Larsen, P.M.2
-
65
-
-
0036198435
-
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
Ficarro SB, McCleland ML, Stukenberg PT, Burke DJ, Ross MM, Shabanowitz J, Hunt DF, and White FM. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat Biotechnol 20: 301-305, 2002.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 301-305
-
-
Ficarro, S.B.1
McCleland, M.L.2
Stukenberg, P.T.3
Burke, D.J.4
Ross, M.M.5
Shabanowitz, J.6
Hunt, D.F.7
White, F.M.8
-
66
-
-
0036624632
-
Functional proteomics: Mapping protein-protein interactions and pathways
-
Figeys D. Functional proteomics: mapping protein-protein interactions and pathways. Curr Opin Mol Ther 4: 210-215, 2002.
-
(2002)
Curr Opin Mol Ther
, vol.4
, pp. 210-215
-
-
Figeys, D.1
-
67
-
-
0037309124
-
Novel approaches to map protein interactions
-
Figeys D. Novel approaches to map protein interactions. Curr Opin Biotechnol 14: 119-125, 2003.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 119-125
-
-
Figeys, D.1
-
68
-
-
0038116819
-
Proteomics in 2002: A year of technical development and wide-ranging applications
-
Figeys D. Proteomics in 2002: a year of technical development and wide-ranging applications. Anal Chem 75: 2891-2905, 2003.
-
(2003)
Anal Chem
, vol.75
, pp. 2891-2905
-
-
Figeys, D.1
-
69
-
-
0029907530
-
Protein identification by solid phase microextraction-capillary zone electrophoresis-microelectrospray-tandem mass spectrometry
-
Figeys D, Ducret A, Yates JR III, and Aebersold R. Protein identification by solid phase microextraction-capillary zone electrophoresis- microelectrospray-tandem mass spectrometry. Nat Biotechnol 14: 1579-1583, 1996.
-
(1996)
Nat Biotechnol
, vol.14
, pp. 1579-1583
-
-
Figeys, D.1
Ducret, A.2
Yates III, J.R.3
Aebersold, R.4
-
70
-
-
70449634926
-
Two-dimensional database of mouse liver proteins. An update
-
Fountoulakis M, Juranville JF, Berndt P, Langen H, and Suter L. Two-dimensional database of mouse liver proteins. An update. Electrophoresis 22: 1747-1763, 2001.
-
(2001)
Electrophoresis
, vol.22
, pp. 1747-1763
-
-
Fountoulakis, M.1
Juranville, J.F.2
Berndt, P.3
Langen, H.4
Suter, L.5
-
71
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Hofert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heurtier MA, Copley RR, Edelmann A, Querfurth E, Rybin V, Drewes G, Raida M, Bouwmeester T, Bork P, Seraphin B, Kuster B, Neubauer G, and Superti-Furga G. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147, 2002.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
72
-
-
0034987933
-
Pulmonary edema fluid from patients with acute lung injury augments in vitro alveolar epithelial repair by an IL-1β-dependent mechanism
-
Geiser T, Atabai K, Jarreau PH, Ware LB, Pugin J, and Matthay MA. Pulmonary edema fluid from patients with acute lung injury augments in vitro alveolar epithelial repair by an IL-1β-dependent mechanism. Am J Respir Crit Care Med 163: 1384-1388, 2001.
-
(2001)
Am J Respir Crit Care Med
, vol.163
, pp. 1384-1388
-
-
Geiser, T.1
Atabai, K.2
Jarreau, P.H.3
Ware, L.B.4
Pugin, J.5
Matthay, M.A.6
-
73
-
-
0036208143
-
Newly identified proteins in human nasal lavage fluid from non-smokers and smokers using two-dimensional gel electrophoresis and peptide mass finger-printing
-
Ghafouri B, Stahlbom B, Tagesson C, and Lindahl M. Newly identified proteins in human nasal lavage fluid from non-smokers and smokers using two-dimensional gel electrophoresis and peptide mass finger-printing. Proteomics 2: 112-120, 2002.
-
(2002)
Proteomics
, vol.2
, pp. 112-120
-
-
Ghafouri, B.1
Stahlbom, B.2
Tagesson, C.3
Lindahl, M.4
-
74
-
-
0036463947
-
Evaluation of two-dimensional differential gel electrophoresis for proteomic expression analysis of a model breast cancer cell system
-
Gharbi S, Gaffney P, Yang A, Zvelebil MJ, Cramer R, Waterfield MD, and Timms JF. Evaluation of two-dimensional differential gel electrophoresis for proteomic expression analysis of a model breast cancer cell system. Mol Cell Proteomics 1: 91-98, 2002.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 91-98
-
-
Gharbi, S.1
Gaffney, P.2
Yang, A.3
Zvelebil, M.J.4
Cramer, R.5
Waterfield, M.D.6
Timms, J.F.7
-
75
-
-
0035221502
-
Perspectives for mass spectrometry and functional proteomics
-
Godovac-Zimmermann J and Brown LR. Perspectives for mass spectrometry and functional proteomics. Mass Spectrom Rev 20: 1-57, 2001.
-
(2001)
Mass Spectrom Rev
, vol.20
, pp. 1-57
-
-
Godovac-Zimmermann, J.1
Brown, L.R.2
-
76
-
-
0032932377
-
Functional proteomics of signal transduction by membrane receptors
-
Godovac-Zimmermann J, Soskic V, Poznanovic S, and Brianza F. Functional proteomics of signal transduction by membrane receptors. Electrophoresis 20: 952-961, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 952-961
-
-
Godovac-Zimmermann, J.1
Soskic, V.2
Poznanovic, S.3
Brianza, F.4
-
77
-
-
0034095972
-
The current state of two-dimensional electrophoresis with immobilized pH gradients
-
Gorg A, Obermaier C, Boguth G, Harder A, Scheibe B, Wildgruber R, and Weiss W. The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 21: 1037-1053, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 1037-1053
-
-
Gorg, A.1
Obermaier, C.2
Boguth, G.3
Harder, A.4
Scheibe, B.5
Wildgruber, R.6
Weiss, W.7
-
78
-
-
0037307837
-
Stable isotope-coded proteomic mass spectrometry
-
Goshe MB and Smith RD. Stable isotope-coded proteomic mass spectrometry. Curr Opin Biotechnol 14: 101-109, 2003.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 101-109
-
-
Goshe, M.B.1
Smith, R.D.2
-
79
-
-
0036468952
-
Phosphoprotein isotope-coded affinity tags: Application to the enrichment and identification of low-abundance phosphoproteins
-
Goshe MB, Veenstra TD, Panisko EA, Conrads TP, Angell NH, and Smith RD. Phosphoprotein isotope-coded affinity tags: application to the enrichment and identification of low-abundance phosphoproteins. Anal Chem 74: 607-616, 2002.
-
(2002)
Anal Chem
, vol.74
, pp. 607-616
-
-
Goshe, M.B.1
Veenstra, T.D.2
Panisko, E.A.3
Conrads, T.P.4
Angell, N.H.5
Smith, R.D.6
-
80
-
-
0034604831
-
Analysis of small-scale biological compartments by capillary electrophoresis
-
Govindaraju K and Lloyd DK. Analysis of small-scale biological compartments by capillary electrophoresis. J Chromatogr B Biomed Sci Appl 745: 127-135, 2000.
-
(2000)
J Chromatogr B Biomed Sci Appl
, vol.745
, pp. 127-135
-
-
Govindaraju, K.1
Lloyd, D.K.2
-
81
-
-
0036847548
-
Surfactant in children with malignancies, immunosuppression, fever and pulmonary infiltrates
-
Griese M, Neumann M, von Bredow T, Schmidt R, and Ratjen F. Surfactant in children with malignancies, immunosuppression, fever and pulmonary infiltrates. Eur Respir J 20: 1284-1291, 2002.
-
(2002)
Eur Respir J
, vol.20
, pp. 1284-1291
-
-
Griese, M.1
Neumann, M.2
Von Bredow, T.3
Schmidt, R.4
Ratjen, F.5
-
83
-
-
0035824631
-
Advances in proteome analysis by mass spectrometry
-
Griffin TJ and Aebersold R. Advances in proteome analysis by mass spectrometry. J Biol Chem 276: 45497-45500, 2001.
-
(2001)
J Biol Chem
, vol.276
, pp. 45497-45500
-
-
Griffin, T.J.1
Aebersold, R.2
-
85
-
-
0035282172
-
Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer
-
Griffin TJ, Gygi SP, Rist B, Aebersold R, Loboda A, Jilkine A, Ens W, and Standing KG. Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer. Anal Chem 73: 978-986, 2001.
-
(2001)
Anal Chem
, vol.73
, pp. 978-986
-
-
Griffin, T.J.1
Gygi, S.P.2
Rist, B.3
Aebersold, R.4
Loboda, A.5
Jilkine, A.6
Ens, W.7
Standing, K.G.8
-
87
-
-
0034662907
-
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
-
Gygi SP, Corthals GL, Zhang Y, Rochon Y, and Aebersold R. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc Natl Acad Sci USA 97: 9390-9395, 2000.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 9390-9395
-
-
Gygi, S.P.1
Corthals, G.L.2
Zhang, Y.3
Rochon, Y.4
Aebersold, R.5
-
88
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, and Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 17: 994-999, 1999.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
89
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi SP, Rochon Y, Franza BR, and Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 19: 1720-1730, 1999.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
90
-
-
0031808347
-
Electrophoresis-related protein modification: Alkylation of carboxy residues revealed by mass spectrometry
-
Haebel S, Albrecht T, Sparbier K, Walden P, Korner R, and Steup M. Electrophoresis-related protein modification: alkylation of carboxy residues revealed by mass spectrometry. Electrophoresis 19: 679-686, 1998.
-
(1998)
Electrophoresis
, vol.19
, pp. 679-686
-
-
Haebel, S.1
Albrecht, T.2
Sparbier, K.3
Walden, P.4
Korner, R.5
Steup, M.6
-
91
-
-
0034789979
-
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
-
Han DK, Eng J, Zhou H, and Aebersold R. Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry. Nat Biotechnol 19: 946-951, 2001.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 946-951
-
-
Han, D.K.1
Eng, J.2
Zhou, H.3
Aebersold, R.4
-
92
-
-
0347334566
-
Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-ICAT and multi-dimensional chromatography
-
Hansen KC, Schmitt-Ulms G, Chalkley RJ, Hirsch J, Baldwin MA, and Burlingame AL. Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-ICAT and multi-dimensional chromatography. Mol Cell Proteomics 2: 299-314, 2003.
-
(2003)
Mol Cell Proteomics
, vol.2
, pp. 299-314
-
-
Hansen, K.C.1
Schmitt-Ulms, G.2
Chalkley, R.J.3
Hirsch, J.4
Baldwin, M.A.5
Burlingame, A.L.6
-
93
-
-
0036479238
-
Selective nitration of histone tyrosine residues in vivo in mutatect tumors
-
Haqqani AS, Kelly JF, and Birnboim HC. Selective nitration of histone tyrosine residues in vivo in mutatect tumors. J Biol Chem 277: 3614-3621, 2002.
-
(2002)
J Biol Chem
, vol.277
, pp. 3614-3621
-
-
Haqqani, A.S.1
Kelly, J.F.2
Birnboim, H.C.3
-
94
-
-
0036731069
-
Factors governing the solubilization of phosphopeptides retained on ferric NTA IMAC beads and their analysis by MALDI TOFMS
-
Hart SR, Waterfield MD, Burlingame AL, and Cramer R. Factors governing the solubilization of phosphopeptides retained on ferric NTA IMAC beads and their analysis by MALDI TOFMS. J Am Soc Mass Spectrom 13: 1042-1051, 2002.
-
(2002)
J Am Soc Mass Spectrom
, vol.13
, pp. 1042-1051
-
-
Hart, S.R.1
Waterfield, M.D.2
Burlingame, A.L.3
Cramer, R.4
-
95
-
-
0025691545
-
Collision-induced dissociation
-
Hayes RN and Gross ML. Collision-induced dissociation. Methods Enzymol 193: 237-263, 1990.
-
(1990)
Methods Enzymol
, vol.193
, pp. 237-263
-
-
Hayes, R.N.1
Gross, M.L.2
-
96
-
-
0035060298
-
Sputum induction as a research tool for sampling the airways of subjects with cystic fibrosis
-
Henig NR, Tonelli MR, Pier MV, Burns JL, and Aitken ML. Sputum induction as a research tool for sampling the airways of subjects with cystic fibrosis. Thorax 56: 306-311, 2001.
-
(2001)
Thorax
, vol.56
, pp. 306-311
-
-
Henig, N.R.1
Tonelli, M.R.2
Pier, M.V.3
Burns, J.L.4
Aitken, M.L.5
-
97
-
-
0027198862
-
Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases
-
Henzel WJ, Billeci TM, Stults JT, Wong SC, Grimley C, and Watanabe C. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci USA 90: 5011-5015, 1993.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 5011-5015
-
-
Henzel, W.J.1
Billeci, T.M.2
Stults, J.T.3
Wong, S.C.4
Grimley, C.5
Watanabe, C.6
-
98
-
-
0003225257
-
What place for polyacrylamide in proteomics?
-
Herbert BR, Harry JL, Packer NH, Gooley AA, Pedersen SK, and Williams KL. What place for polyacrylamide in proteomics? Trends Biotechnol 19: S3-S9, 2001.
-
(2001)
Trends Biotechnol
, vol.19
-
-
Herbert, B.R.1
Harry, J.L.2
Packer, N.H.3
Gooley, A.A.4
Pedersen, S.K.5
Williams, K.L.6
-
99
-
-
0032429448
-
Mapping and identification of Corynebacterium glutamicum proteins by two-dimensional gel electrophoresis and microsequencing
-
Hermann T, Wersch G, Uhlemann EM, Schmid R, and Burkovski A. Mapping and identification of Corynebacterium glutamicum proteins by two-dimensional gel electrophoresis and microsequencing. Electrophoresis 19: 3217-3221, 1998.
-
(1998)
Electrophoresis
, vol.19
, pp. 3217-3221
-
-
Hermann, T.1
Wersch, G.2
Uhlemann, E.M.3
Schmid, R.4
Burkovski, A.5
-
100
-
-
2942723627
-
Proteomic patterns in acute lung injury human pulmonary edema fluid compared to hydrostatic pulmonary edema
-
In press
-
Hirsch J, Hansen KC, Chalkley RJ, Frank JA, Fang X, Burlingame AL, and Matthay MA. Proteomic patterns in acute lung injury human pulmonary edema fluid compared to hydrostatic pulmonary edema (Abstract). Am J Respir Crit Care Med. In press.
-
Am J Respir Crit Care Med
-
-
Hirsch, J.1
Hansen, K.C.2
Chalkley, R.J.3
Frank, J.A.4
Fang, X.5
Burlingame, A.L.6
Matthay, M.A.7
-
101
-
-
0036615656
-
The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry
-
Huang L, Baldwin MA, Maltby DA, Medzihradszky KF, Baker PR, Allen N, Rexach M, Edmondson RD, Campbell J, Juhasz P, Martin SA, Vestal ML, and Burlingame AL. The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry. Mol Cell Proteomics 1: 434-450, 2002.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 434-450
-
-
Huang, L.1
Baldwin, M.A.2
Maltby, D.A.3
Medzihradszky, K.F.4
Baker, P.R.5
Allen, N.6
Rexach, M.7
Edmondson, R.D.8
Campbell, J.9
Juhasz, P.10
Martin, S.A.11
Vestal, M.L.12
Burlingame, A.L.13
-
102
-
-
0037224581
-
Is proteomics heading in the wrong direction?
-
Huber LA. Is proteomics heading in the wrong direction? Nat Rev Mol Cell Biol 4: 74-80, 2003.
-
(2003)
Nat Rev Mol Cell Biol
, vol.4
, pp. 74-80
-
-
Huber, L.A.1
-
103
-
-
0018601901
-
Inflammatory and immune processes in the human lung in health and disease
-
Hunninghake GW, Gadek JE, Kawanami O, Ferrans VJ, and Crysal RG. Inflammatory and immune processes in the human lung in health and disease. Am J Pathol 97: 149-204, 1979.
-
(1979)
Am J Pathol
, vol.97
, pp. 149-204
-
-
Hunninghake, G.W.1
Gadek, J.E.2
Kawanami, O.3
Ferrans, V.J.4
Crysal, R.G.5
-
104
-
-
0033946468
-
Proteomic analysis of NMDA receptor-adhesion protein signaling complexes
-
Husi H, Ward MA, Choudhary JS, Blackstock WP, and Grant SG. Proteomic analysis of NMDA receptor-adhesion protein signaling complexes. Nat Neurosci 3: 661-669, 2000.
-
(2000)
Nat Neurosci
, vol.3
, pp. 661-669
-
-
Husi, H.1
Ward, M.A.2
Choudhary, J.S.3
Blackstock, W.P.4
Grant, S.G.5
-
105
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, Bumgarner R, Goodlett DR, Aebersold R, and Hood L. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292: 929-934, 2001.
-
(2001)
Science
, vol.292
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
Eng, J.K.6
Bumgarner, R.7
Goodlett, D.R.8
Aebersold, R.9
Hood, L.10
-
106
-
-
0034772403
-
The role of separation science in proteomics research
-
Issaq HJ. The role of separation science in proteomics research. Electrophoresis 22: 3629-3638 2001.
-
(2001)
Electrophoresis
, vol.22
, pp. 3629-3638
-
-
Issaq, H.J.1
-
107
-
-
0036745679
-
Methods for fractionation, separation and profiling of proteins and peptides
-
Issaq HJ, Conrads TP, Janini GM, and Veenstra TD. Methods for fractionation, separation and profiling of proteins and peptides. Electrophoresis 23: 3048-3061 2002.
-
(2002)
Electrophoresis
, vol.23
, pp. 3048-3061
-
-
Issaq, H.J.1
Conrads, T.P.2
Janini, G.M.3
Veenstra, T.D.4
-
108
-
-
0036079692
-
The SELDI-TOF MS approach to proteomics: Protein profiling and biomarker identification
-
Issaq HJ, Veenstra TD, Conrads TP, and Felschow D. The SELDI-TOF MS approach to proteomics: protein profiling and biomarker identification. Biochem Biophys Res Commun 292: 587-592, 2002.
-
(2002)
Biochem Biophys Res Commun
, vol.292
, pp. 587-592
-
-
Issaq, H.J.1
Veenstra, T.D.2
Conrads, T.P.3
Felschow, D.4
-
109
-
-
0028060306
-
Protein identification in DNA databases by peptide mass fingerprinting
-
James P, Quadroni M, Carafoli E, and Gonnet G. Protein identification in DNA databases by peptide mass fingerprinting. Protein Sci 3: 1347-1350, 1994.
-
(1994)
Protein Sci
, vol.3
, pp. 1347-1350
-
-
James, P.1
Quadroni, M.2
Carafoli, E.3
Gonnet, G.4
-
110
-
-
0023449998
-
Novel fragmentation process of peptides by collision-induced decomposition in a tandem mass spectrometer: Differentiation of leucine and isoleucine
-
Johnson RS, Martin SA, Biemann K, Stults JT, and Watson JT. Novel fragmentation process of peptides by collision-induced decomposition in a tandem mass spectrometer: differentiation of leucine and isoleucine. Anal Chem 59: 2621-2625, 1987.
-
(1987)
Anal Chem
, vol.59
, pp. 2621-2625
-
-
Johnson, R.S.1
Martin, S.A.2
Biemann, K.3
Stults, J.T.4
Watson, J.T.5
-
111
-
-
0025057511
-
A comparison of albumin and urea as reference markers in bronchoalveolar lavage fluid from patients with ideopathic pulmonary fibrosis
-
Jones KP. A comparison of albumin and urea as reference markers in bronchoalveolar lavage fluid from patients with ideopathic pulmonary fibrosis. Eur Resp J 3: 152-156, 1990.
-
(1990)
Eur Resp J
, vol.3
, pp. 152-156
-
-
Jones, K.P.1
-
112
-
-
0035482240
-
The tolerability, safety, and success of sputum induction and combined hypertonic saline challenge in children
-
Jones PD, Hankin R, Simpson J, Gibson PG, and Henry RL. The tolerability, safety, and success of sputum induction and combined hypertonic saline challenge in children. Am J Respir Crit Care Med 164: 1146-1149, 2001.
-
(2001)
Am J Respir Crit Care Med
, vol.164
, pp. 1146-1149
-
-
Jones, P.D.1
Hankin, R.2
Simpson, J.3
Gibson, P.G.4
Henry, R.L.5
-
113
-
-
0031014649
-
The quadrupole ion trap mass spectrometer-A small solution to a big challenge
-
Jonscher KR and Yates JR III. The quadrupole ion trap mass spectrometer-a small solution to a big challenge. Anal Biochem 244: 1-15, 1997.
-
(1997)
Anal Biochem
, vol.244
, pp. 1-15
-
-
Jonscher, K.R.1
Yates III, J.R.2
-
114
-
-
0033384807
-
Exacerbation of acute pulmonary edema during assisted mechanical ventilation using a low-tidal volume, lung-protective ventilator strategy
-
Kallet RH, Alonso JA, Luce JM, and Matthay MA. Exacerbation of acute pulmonary edema during assisted mechanical ventilation using a low-tidal volume, lung-protective ventilator strategy. Chest 116: 1826-1832, 1999.
-
(1999)
Chest
, vol.116
, pp. 1826-1832
-
-
Kallet, R.H.1
Alonso, J.A.2
Luce, J.M.3
Matthay, M.A.4
-
115
-
-
0036500132
-
Functional proteomics of transforming growth factor-β1-stimulated Mv1Lu epithelial cells: Rad51 as a target of TGFβ1-dependent regulation of DNA repair
-
Kanamoto T, Hellman U, Heldin CH, and Souchelnytskyi S. Functional proteomics of transforming growth factor-β1-stimulated Mv1Lu epithelial cells: Rad51 as a target of TGFβ1-dependent regulation of DNA repair. EMBO J 21: 1219-1230, 2002.
-
(2002)
EMBO J
, vol.21
, pp. 1219-1230
-
-
Kanamoto, T.1
Hellman, U.2
Heldin, C.H.3
Souchelnytskyi, S.4
-
116
-
-
0024289037
-
Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons
-
Karas M and Hillenkamp F. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal Chem 60: 2299-2301, 1988.
-
(1988)
Anal Chem
, vol.60
, pp. 2299-2301
-
-
Karas, M.1
Hillenkamp, F.2
-
117
-
-
0036593492
-
Heterogeneity of genome and proteome content in bacteria, archaea, and eukaryotes
-
Karlin S, Brocchieri L, Trent J, Blaisdell BE, and Mrazek J. Heterogeneity of genome and proteome content in bacteria, archaea, and eukaryotes. Theor Popul Biol 61: 367-390, 2002.
-
(2002)
Theor Popul Biol
, vol.61
, pp. 367-390
-
-
Karlin, S.1
Brocchieri, L.2
Trent, J.3
Blaisdell, B.E.4
Mrazek, J.5
-
118
-
-
0032435515
-
Novel insights into structure and function of MRP8 (S100A8) and MRP14 (S100A9)
-
Kerkhoff C, Klempt M, and Sorg C. Novel insights into structure and function of MRP8 (S100A8) and MRP14 (S100A9). Biochim Biophys Acta 1448: 200-211, 1998.
-
(1998)
Biochim Biophys Acta
, vol.1448
, pp. 200-211
-
-
Kerkhoff, C.1
Klempt, M.2
Sorg, C.3
-
119
-
-
0032612938
-
Large-gel 2-D electrophoresis
-
Klose J. Large-gel 2-D electrophoresis. Methods Mol Biol 112: 147-172, 1999.
-
(1999)
Methods Mol Biol
, vol.112
, pp. 147-172
-
-
Klose, J.1
-
120
-
-
0016637146
-
Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals
-
Klose J. Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals, Humangenetik 26: 231-243, 1975.
-
(1975)
Humangenetik
, vol.26
, pp. 231-243
-
-
Klose, J.1
-
121
-
-
18544382234
-
Genetic analysis of the mouse brain proteome
-
Klose J, Nock C, Herrmann M, Stuhler K, Marcus K, Bluggel M, Krause E, Schalkwyk LC, Rastan S, Brown SD, Bussow K, Himmelbauer H, and Lehrach H. Genetic analysis of the mouse brain proteome. Nat Genet 30: 385-393, 2002.
-
(2002)
Nat Genet
, vol.30
, pp. 385-393
-
-
Klose, J.1
Nock, C.2
Herrmann, M.3
Stuhler, K.4
Marcus, K.5
Bluggel, M.6
Krause, E.7
Schalkwyk, L.C.8
Rastan, S.9
Brown, S.D.10
Bussow, K.11
Himmelbauer, H.12
Lehrach, H.13
-
122
-
-
0042861519
-
Phosphospecific proteolysis for mapping sites of protein phosphorylation
-
Knight ZA, Schilling B, Row RH, Kenski DM, Gibson BW, and Shokat KM. Phosphospecific proteolysis for mapping sites of protein phosphorylation. Nat Biotechnol 21: 1047-1054, 2003.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 1047-1054
-
-
Knight, Z.A.1
Schilling, B.2
Row, R.H.3
Kenski, D.M.4
Gibson, B.W.5
Shokat, K.M.6
-
123
-
-
0037295405
-
Nanoelectrospray-based detection and sequencing of substoichiometric amounts of phosphopeptides in complex mixtures
-
Kocher T, Allmaier G, and Wilm M. Nanoelectrospray-based detection and sequencing of substoichiometric amounts of phosphopeptides in complex mixtures. J Mass Spectrom 38: 131-137, 2003.
-
(2003)
J Mass Spectrom
, vol.38
, pp. 131-137
-
-
Kocher, T.1
Allmaier, G.2
Wilm, M.3
-
125
-
-
0042400295
-
Continuous free-flow electrophoresis
-
Krivankova L and Bocek P. Continuous free-flow electrophoresis. Electrophoresis 19: 1064-1074, 1998.
-
(1998)
Electrophoresis
, vol.19
, pp. 1064-1074
-
-
Krivankova, L.1
Bocek, P.2
-
127
-
-
0027418167
-
Elevated levels of lung surfactant protein A in sera from patients with idiopathic pulmonary fibrosis and pulmonary alveolar proteinosis
-
Kuroki Y, Tsutahara S, Shijubo N, Takahashi H, Shiratori M, Hattori A, Honda Y, Abe S, and Akino T. Elevated levels of lung surfactant protein A in sera from patients with idiopathic pulmonary fibrosis and pulmonary alveolar proteinosis. Am Rev Respir Dis 147: 723-729, 1993.
-
(1993)
Am Rev Respir Dis
, vol.147
, pp. 723-729
-
-
Kuroki, Y.1
Tsutahara, S.2
Shijubo, N.3
Takahashi, H.4
Shiratori, M.5
Hattori, A.6
Honda, Y.7
Abe, S.8
Akino, T.9
-
128
-
-
0031571138
-
Sequencing of N-linked oligosaccharides directly from protein gels: In-gel deglycosylation followed by matrix-assisted laser desorption/ionization mass spectrometry and normal-phase high-performance liquid chromatography
-
Kuster B, Wheeler SF, Hunter AP, Dwek RA, and Harvey DJ. Sequencing of N-linked oligosaccharides directly from protein gels: in-gel deglycosylation followed by matrix-assisted laser desorption/ionization mass spectrometry and normal-phase high-performance liquid chromatography. Anal Biochem 250: 82-101, 1997.
-
(1997)
Anal Biochem
, vol.250
, pp. 82-101
-
-
Kuster, B.1
Wheeler, S.F.2
Hunter, A.P.3
Dwek, R.A.4
Harvey, D.J.5
-
129
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685, 1970.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
130
-
-
0034666010
-
Protein targets of monocrotaline pyrrole in pulmonary artery endothelial cells
-
Lame MW, Jones AD, Wilson DW, Dunston SK, and Segall HJ. Protein targets of monocrotaline pyrrole in pulmonary artery endothelial cells. J Biol Chem 275: 29091-29099, 2000.
-
(2000)
J Biol Chem
, vol.275
, pp. 29091-29099
-
-
Lame, M.W.1
Jones, A.D.2
Wilson, D.W.3
Dunston, S.K.4
Segall, H.J.5
-
132
-
-
0343852347
-
Effect of protein application mode and acrylamide concentration on the resolution of protein spots separated by two-dimensional gel electrophoresis
-
Langen H, Roder D, Juranville JF, and Fountoulakis M. Effect of protein application mode and acrylamide concentration on the resolution of protein spots separated by two-dimensional gel electrophoresis. Electrophoresis 18: 2085-2090, 1997.
-
(1997)
Electrophoresis
, vol.18
, pp. 2085-2090
-
-
Langen, H.1
Roder, D.2
Juranville, J.F.3
Fountoulakis, M.4
-
133
-
-
0037709383
-
Unique scanning capabilities of a new hybrid linear ion trap mass spectrometer (Q TRAP) used for high sensitivity proteomics applications
-
Le Blanc JC, Hager JW, Ilisiu AM, Hunter C, Zhong F, and Chu I. Unique scanning capabilities of a new hybrid linear ion trap mass spectrometer (Q TRAP) used for high sensitivity proteomics applications. Proteomics 3: 859-869, 2003.
-
(2003)
Proteomics
, vol.3
, pp. 859-869
-
-
Le Blanc, J.C.1
Hager, J.W.2
Ilisiu, A.M.3
Hunter, C.4
Zhong, F.5
Chu, I.6
-
134
-
-
0027410677
-
Bronchoalveolar lavage fluid proteins in human lung disease: Analysis by two-dimensional electrophoresis
-
Lenz AG, Meyer B, Costabel U, and Maier K. Bronchoalveolar lavage fluid proteins in human lung disease: analysis by two-dimensional electrophoresis. Electrophoresis 14: 242-244, 1993.
-
(1993)
Electrophoresis
, vol.14
, pp. 242-244
-
-
Lenz, A.G.1
Meyer, B.2
Costabel, U.3
Maier, K.4
-
135
-
-
0025082542
-
Two-dimensional electrophoresis of dog bronchoalveolar lavage fluid proteins
-
Lenz AG, Meyer B, Weber H, and Maier K. Two-dimensional electrophoresis of dog bronchoalveolar lavage fluid proteins. Electrophoresis 11: 510-513, 1990.
-
(1990)
Electrophoresis
, vol.11
, pp. 510-513
-
-
Lenz, A.G.1
Meyer, B.2
Weber, H.3
Maier, K.4
-
136
-
-
0034957669
-
High-throughput proteomics: Protein expression and purification in the postgenomic world
-
Lesley SA. High-throughput proteomics: protein expression and purification in the postgenomic world. Protein Expr Purif 22: 159-164, 2001.
-
(2001)
Protein Expr Purif
, vol.22
, pp. 159-164
-
-
Lesley, S.A.1
-
137
-
-
0029804716
-
Two dimensional protein patterns of bronchoalveolar lavage fluid from non-smokers, smokers, and subjects exposed to asbestos
-
Lindahl M, Ekstrom T, Sorensen J, and Tagesson C. Two dimensional protein patterns of bronchoalveolar lavage fluid from non-smokers, smokers, and subjects exposed to asbestos. Thorax 51: 1028-1035, 1996.
-
(1996)
Thorax
, vol.51
, pp. 1028-1035
-
-
Lindahl, M.1
Ekstrom, T.2
Sorensen, J.3
Tagesson, C.4
-
138
-
-
0032428443
-
Protein patterns of human nasal and bronchoalveolar lavage fluids analyzed with two-dimensional gel electrophoresis
-
Lindahl M, Stahlbom B, Svartz J, and Tagesson C. Protein patterns of human nasal and bronchoalveolar lavage fluids analyzed with two-dimensional gel electrophoresis. Electrophoresis 19: 3222-3229, 1998.
-
(1998)
Electrophoresis
, vol.19
, pp. 3222-3229
-
-
Lindahl, M.1
Stahlbom, B.2
Svartz, J.3
Tagesson, C.4
-
139
-
-
62749118573
-
Identification of a new potential airway irritation marker, palate lung nasal epithelial clone protein, in human nasal lavage fluid with two-dimensional electrophoresis and matrix-assisted laser desorption/ionization-time of flight
-
Lindahl M, Stahlbom B, and Tagesson C. Identification of a new potential airway irritation marker, palate lung nasal epithelial clone protein, in human nasal lavage fluid with two-dimensional electrophoresis and matrix-assisted laser desorption/ionization-time of flight. Electrophoresis 22: 1795-1800, 2001.
-
(2001)
Electrophoresis
, vol.22
, pp. 1795-1800
-
-
Lindahl, M.1
Stahlbom, B.2
Tagesson, C.3
-
140
-
-
0343049118
-
Newly identified proteins in human nasal and bronchoalveolar lavage fluids: Potential biomedical and clinical applications
-
Lindahl M, Stahlbom B, and Tagesson C. Newly identified proteins in human nasal and bronchoalveolar lavage fluids: potential biomedical and clinical applications. Electrophoresis 20: 3670-3676, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 3670-3676
-
-
Lindahl, M.1
Stahlbom, B.2
Tagesson, C.3
-
141
-
-
0029130138
-
Two-dimensional gel electrophoresis of nasal and bronchoalveolar lavage fluids after occupational exposure
-
Lindahl M, Stahlbom B, and Tagesson C. Two-dimensional gel electrophoresis of nasal and bronchoalveolar lavage fluids after occupational exposure. Electrophoresis 16: 1199-1204, 1995.
-
(1995)
Electrophoresis
, vol.16
, pp. 1199-1204
-
-
Lindahl, M.1
Stahlbom, B.2
Tagesson, C.3
-
142
-
-
0032900311
-
Demonstration of different forms of the anti-inflammatory proteins lipocortin-1 and Clara cell protein-16 in human nasal and bronchoalveolar lavage fluids
-
Lindahl M, Svartz J, and Tagesson C. Demonstration of different forms of the anti-inflammatory proteins lipocortin-1 and Clara cell protein-16 in human nasal and bronchoalveolar lavage fluids. Electrophoresis 20: 881-890, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 881-890
-
-
Lindahl, M.1
Svartz, J.2
Tagesson, C.3
-
143
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
Link AJ, Eng J, Schieltz DM, Carmack E, Mize GJ, Morris DR, Garvik BM, and Yates JR III. Direct analysis of protein complexes using mass spectrometry. Nat Biotechnol 17: 676-682, 1999.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 676-682
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
Carmack, E.4
Mize, G.J.5
Morris, D.R.6
Garvik, B.M.7
Yates III, J.R.8
-
144
-
-
0037143692
-
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
-
Lipton MS, Pasa-Tolic L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, Stritmatter E, Tolic N, Udseth HR, Venkateswaran A, Wong KK, Zhao R, and Smith RD. Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags. Proc Natl Acad Sci USA 99: 11049-11054, 2002.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 11049-11054
-
-
Lipton, M.S.1
Pasa-Tolic, L.2
Anderson, G.A.3
Anderson, D.J.4
Auberry, D.L.5
Battista, J.R.6
Daly, M.J.7
Fredrickson, J.8
Hixson, K.K.9
Kostandarithes, H.10
Masselon, C.11
Markillie, L.M.12
Moore, R.J.13
Romine, M.F.14
Shen, Y.15
Stritmatter, E.16
Tolic, N.17
Udseth, H.R.18
Venkateswaran, A.19
Wong, K.K.20
Zhao, R.21
Smith, R.D.22
more..
-
145
-
-
0036224578
-
Proteoglycan and proteome profiling of central human pulmonary fibrotic tissue utilizing miniaturized sample preparation: A feasibility study
-
Malmstrom J, Larsen K, Hansson L, Lofdahl CG, Norregard-Jensen O, Marko-Varga G, and Westergren-Thorsson G. Proteoglycan and proteome profiling of central human pulmonary fibrotic tissue utilizing miniaturized sample preparation: a feasibility study. Proteomics 2: 394-404, 2002.
-
(2002)
Proteomics
, vol.2
, pp. 394-404
-
-
Malmstrom, J.1
Larsen, K.2
Hansson, L.3
Lofdahl, C.G.4
Norregard-Jensen, O.5
Marko-Varga, G.6
Westergren-Thorsson, G.7
-
146
-
-
0032702559
-
Capillary electrophoresis of proteins for proteomic studies
-
Manabe T. Capillary electrophoresis of proteins for proteomic studies. Electrophoresis 20: 3116-3121, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 3116-3121
-
-
Manabe, T.1
-
147
-
-
0034097325
-
Combination of electrophoretic techniques for comprehensive analysis of complex protein systems
-
Manabe T. Combination of electrophoretic techniques for comprehensive analysis of complex protein systems. Electrophoresis 21: 1116-1122, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 1116-1122
-
-
Manabe, T.1
-
148
-
-
0032900441
-
A nondenaturing protein map of human plasma proteins correlated with a denaturing polypeptide map combining techniques of micro two-dimensional gel electrophoresis
-
Manabe T, Mizuma H, and Watanabe K. A nondenaturing protein map of human plasma proteins correlated with a denaturing polypeptide map combining techniques of micro two-dimensional gel electrophoresis. Electrophoresis 20: 830-835, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 830-835
-
-
Manabe, T.1
Mizuma, H.2
Watanabe, K.3
-
149
-
-
0034923505
-
Analysis of proteins and proteomes by mass spectrometry
-
Mann M, Hendrickson RC, and Pandey A. Analysis of proteins and proteomes by mass spectrometry. Annu Rev Biochem 70: 437-473, 2001.
-
(2001)
Annu Rev Biochem
, vol.70
, pp. 437-473
-
-
Mann, M.1
Hendrickson, R.C.2
Pandey, A.3
-
150
-
-
0027608882
-
Use of mass spectrometric molecular weight information to identify proteins in sequence databases
-
Mann M, Hojrup P, and Roepstorff P. Use of mass spectrometric molecular weight information to identify proteins in sequence databases. Biol Mass Spectrom 22: 338-345, 1993.
-
(1993)
Biol Mass Spectrom
, vol.22
, pp. 338-345
-
-
Mann, M.1
Hojrup, P.2
Roepstorff, P.3
-
151
-
-
0037338365
-
Proteomic analysis of post-translational modifications
-
Mann M and Jensen ON. Proteomic analysis of post-translational modifications. Nat Biotechnol 21: 255-261, 2003.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 255-261
-
-
Mann, M.1
Jensen, O.N.2
-
152
-
-
0036605185
-
Analysis of protein phosphorylation using mass spectrometry: Deciphering the phosphoproteome
-
Mann M, Ong SE, Gronborg M, Steen H, Jensen ON, and Pandey A. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends Biotechnol 20: 261-268, 2002.
-
(2002)
Trends Biotechnol
, vol.20
, pp. 261-268
-
-
Mann, M.1
Ong, S.E.2
Gronborg, M.3
Steen, H.4
Jensen, O.N.5
Pandey, A.6
-
153
-
-
0037032835
-
The protein kinase complement of the human genome
-
Manning G, Whyte DB, Martinez R, Hunter T, and Sudarsanam S. The protein kinase complement of the human genome. Science 298: 1912-1934, 2002.
-
(2002)
Science
, vol.298
, pp. 1912-1934
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
155
-
-
0031623267
-
Fourier transform ion cyclotron resonance mass spectrometry: A primer
-
Marshall AG, Hendrickson CL, and Jackson GS. Fourier transform ion cyclotron resonance mass spectrometry: a primer. Mass Spectrom Rev 17: 1-35, 1998.
-
(1998)
Mass Spectrom Rev
, vol.17
, pp. 1-35
-
-
Marshall, A.G.1
Hendrickson, C.L.2
Jackson, G.S.3
-
157
-
-
0025635795
-
Intact epithelial barrier function is critical for the resolution of alveolar edema in humans
-
Matthay MA and Wiener-Kronish JP. Intact epithelial barrier function is critical for the resolution of alveolar edema in humans. Am Rev Respir Dis 142: 1250-1257, 1990.
-
(1990)
Am Rev Respir Dis
, vol.142
, pp. 1250-1257
-
-
Matthay, M.A.1
Wiener-Kronish, J.P.2
-
158
-
-
0035478709
-
Analysis of phosphorylated proteins and peptides by mass spectrometry
-
McLachlin DT and Chait BT. Analysis of phosphorylated proteins and peptides by mass spectrometry. Curr Opin Chem Biol 5: 591-602, 2001.
-
(2001)
Curr Opin Chem Biol
, vol.5
, pp. 591-602
-
-
McLachlin, D.T.1
Chait, B.T.2
-
160
-
-
0001097977
-
The advantages and versatility of a high-energy collision-induced dissociation-based strategy for the sequence and structural determination of proteins
-
Medzihradszky KF and Burlingame AL. The advantages and versatility of a high-energy collision-induced dissociation-based strategy for the sequence and structural determination of proteins. Methods Comp Methods Enzymol 6: 284-303, 1994.
-
(1994)
Methods Comp Methods Enzymol
, vol.6
, pp. 284-303
-
-
Medzihradszky, K.F.1
Burlingame, A.L.2
-
161
-
-
0034132537
-
The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer
-
Medzihradszky KF, Campbell JM, Baldwin MA, Falick AM, Juhasz P, Vestal ML, and Burlingame AL. The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer. Anal Chem 72: 552-558, 2000.
-
(2000)
Anal Chem
, vol.72
, pp. 552-558
-
-
Medzihradszky, K.F.1
Campbell, J.M.2
Baldwin, M.A.3
Falick, A.M.4
Juhasz, P.5
Vestal, M.L.6
Burlingame, A.L.7
-
162
-
-
0035564727
-
Protein identification by in-gel digestion, high-performance liquid chromatography, and mass spectrometry: Peptide analysis by complementary ionization techniques
-
Medzihradszky KF, Leffler H, Baldwin MA, and Burlingame AL. Protein identification by in-gel digestion, high-performance liquid chromatography, and mass spectrometry: peptide analysis by complementary ionization techniques. J Am Soc Mass Spectrom 12: 215-221, 2001.
-
(2001)
J Am Soc Mass Spectrom
, vol.12
, pp. 215-221
-
-
Medzihradszky, K.F.1
Leffler, H.2
Baldwin, M.A.3
Burlingame, A.L.4
-
163
-
-
0034013944
-
Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry
-
Merchant M and Weinberger SR. Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry. Electrophoresis 21: 1164-1177, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 1164-1177
-
-
Merchant, M.1
Weinberger, S.R.2
-
164
-
-
0035261653
-
Protein functions and biological contexts
-
Miklos GL and Maleszka R. Protein functions and biological contexts. Proteomics 1: 169-178, 2001.
-
(2001)
Proteomics
, vol.1
, pp. 169-178
-
-
Miklos, G.L.1
Maleszka, R.2
-
165
-
-
0029832280
-
Increased interleukin-8 concentrations in the pulmonary edema fluid of patients with acute respiratory distress syndrome from sepsis
-
Miller EJ, Cohen AB, and Matthay MA. Increased interleukin-8 concentrations in the pulmonary edema fluid of patients with acute respiratory distress syndrome from sepsis. Crit Care Med 24: 1448-1454, 1996.
-
(1996)
Crit Care Med
, vol.24
, pp. 1448-1454
-
-
Miller, E.J.1
Cohen, A.B.2
Matthay, M.A.3
-
166
-
-
0036208704
-
Differential gel exposure, a new methodology for the two-dimensional comparison of protein samples
-
Monribot-Espagne C and Boucherie H. Differential gel exposure, a new methodology for the two-dimensional comparison of protein samples. Proteomics 2: 229-240, 2002.
-
(2002)
Proteomics
, vol.2
, pp. 229-240
-
-
Monribot-Espagne, C.1
Boucherie, H.2
-
167
-
-
0033833221
-
Exhaled 8-isoprostane as an in vivo biomarker of lung oxidative stress in patients with COPD and healthy smokers
-
Montuschi P, Collins JV, Ciabattoni G, Lazzeri N, Corradi M, Kharitonov SA, and Barnes PJ. Exhaled 8-isoprostane as an in vivo biomarker of lung oxidative stress in patients with COPD and healthy smokers. Am J Respir Crit Care Med 162: 1175-1177, 2000.
-
(2000)
Am J Respir Crit Care Med
, vol.162
, pp. 1175-1177
-
-
Montuschi, P.1
Collins, J.V.2
Ciabattoni, G.3
Lazzeri, N.4
Corradi, M.5
Kharitonov, S.A.6
Barnes, P.J.7
-
168
-
-
0001058084
-
Increased 8-isoprostane, a marker of oxidative stress, in exhaled condensate of asthma patients
-
Montuschi P, Corradi M, Ciabattoni G, Nightingale J, Kharitonov SA, and Barnes PJ. Increased 8-isoprostane, a marker of oxidative stress, in exhaled condensate of asthma patients. Am J Respir Crit Care Med 160: 216-220, 1999.
-
(1999)
Am J Respir Crit Care Med
, vol.160
, pp. 216-220
-
-
Montuschi, P.1
Corradi, M.2
Ciabattoni, G.3
Nightingale, J.4
Kharitonov, S.A.5
Barnes, P.J.6
-
169
-
-
0034827652
-
Exhaled carbon monoxide and nitric oxide in COPD
-
Montuschi P, Kharitonov SA, and Barnes PJ. Exhaled carbon monoxide and nitric oxide in COPD. Chest 120: 496-501, 2001.
-
(2001)
Chest
, vol.120
, pp. 496-501
-
-
Montuschi, P.1
Kharitonov, S.A.2
Barnes, P.J.3
-
170
-
-
0028228042
-
Plasma and internal membranes from cultured mammalian cells
-
Morre DJ, Reust T, and Morre DM. Plasma and internal membranes from cultured mammalian cells. Methods Enzymol 228: 448-450, 1994.
-
(1994)
Methods Enzymol
, vol.228
, pp. 448-450
-
-
Morre, D.J.1
Reust, T.2
Morre, D.M.3
-
171
-
-
0023931883
-
Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie brilliant blue G-250 and R-250
-
Neuhoff V, Arold N, Taube D, and Ehrhardt W. Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie brilliant blue G-250 and R-250. Electrophoresis 9: 255-262, 1988.
-
(1988)
Electrophoresis
, vol.9
, pp. 255-262
-
-
Neuhoff, V.1
Arold, N.2
Taube, D.3
Ehrhardt, W.4
-
172
-
-
0035987495
-
Bronchoalveolar lavage protein patterns in children with malignancies, immunosuppression, fever and pulmonary infiltrates
-
Neumann M, von Bredow C, Ratjen F, and Griese M. Bronchoalveolar lavage protein patterns in children with malignancies, immunosuppression, fever and pulmonary infiltrates. Proteomics 2: 683-689, 2002.
-
(2002)
Proteomics
, vol.2
, pp. 683-689
-
-
Neumann, M.1
Von Bredow, C.2
Ratjen, F.3
Griese, M.4
-
173
-
-
0034022730
-
A novel alveolar type I cell-specific biochemical marker of human acute lung injury
-
Newman V, Gonzalez RF, Matthay MA, and Dobbs LG. A novel alveolar type I cell-specific biochemical marker of human acute lung injury. Am J Respir Crit Care Med 161: 990-995, 2000.
-
(2000)
Am J Respir Crit Care Med
, vol.161
, pp. 990-995
-
-
Newman, V.1
Gonzalez, R.F.2
Matthay, M.A.3
Dobbs, L.G.4
-
174
-
-
0037251105
-
Proteomics and systems biology approaches to signal transduction in sepsis
-
Nguyen A and Yaffe MB. Proteomics and systems biology approaches to signal transduction in sepsis. Crit Care Med 31: S1-S6, 2003.
-
(2003)
Crit Care Med
, vol.31
-
-
Nguyen, A.1
Yaffe, M.B.2
-
175
-
-
0037023869
-
Database of bronchoalveolar lavage fluid proteins
-
Noel-Georis I, Bernard A, Falmagne P, and Wattiez R. Database of bronchoalveolar lavage fluid proteins. J Chromatogr B Analyt Technol Biomed Life Sci 771: 221-236, 2002.
-
(2002)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.771
, pp. 221-236
-
-
Noel-Georis, I.1
Bernard, A.2
Falmagne, P.3
Wattiez, R.4
-
176
-
-
0035067251
-
Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
-
Oda Y, Nagasu T, and Chait BT. Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome. Nat Biotechnol 19: 379-382, 2001.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 379-382
-
-
Oda, Y.1
Nagasu, T.2
Chait, B.T.3
-
177
-
-
0016711037
-
High resolution two-dimensional electrophoresis of proteins
-
O'Farrell PH. High resolution two-dimensional electrophoresis of proteins. J Biol Chem 250: 4007-4021, 1975.
-
(1975)
J Biol Chem
, vol.250
, pp. 4007-4021
-
-
O'Farrell, P.H.1
-
178
-
-
0033902029
-
Induced sputum: Diagnostic value in interstitial lung disease
-
Olivieri D, D'Ippolito R, and Chetta A. Induced sputum: diagnostic value in interstitial lung disease. Curr Opin Pulm Med 6: 411-414, 2000.
-
(2000)
Curr Opin Pulm Med
, vol.6
, pp. 411-414
-
-
Olivieri, D.1
D'Ippolito, R.2
Chetta, A.3
-
179
-
-
0036618084
-
A proteomic analysis of human cilia: Identification of novel components
-
Ostrowski LE, Blackburn K, Radde KM, Moyer MB, Schlatzer DM, Moseley A, and Boucher RC. A proteomic analysis of human cilia: identification of novel components. Mol Cell Proteomics 1: 451-465, 2002.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 451-465
-
-
Ostrowski, L.E.1
Blackburn, K.2
Radde, K.M.3
Moyer, M.B.4
Schlatzer, D.M.5
Moseley, A.6
Boucher, R.C.7
-
180
-
-
12944269065
-
Rapid identification of proteins by peptide-mass fingerprinting
-
Pappin D, Hojrup P, and Bleasby A. Rapid identification of proteins by peptide-mass fingerprinting. Curr Biol 3: 327-332, 1993.
-
(1993)
Curr Biol
, vol.3
, pp. 327-332
-
-
Pappin, D.1
Hojrup, P.2
Bleasby, A.3
-
181
-
-
0035813230
-
Identification of tyrosine phosphorylation sites on 3-phosphoinositide- dependent protein kinase-1 and their role in regulating kinase activity
-
Park J, Hill MM, Hess D, Brazil DP, Hofsteenge J, and Hemmings BA. Identification of tyrosine phosphorylation sites on 3-phosphoinositide-dependent protein kinase-1 and their role in regulating kinase activity. J Biol Chem 276: 37459-37471, 2001.
-
(2001)
J Biol Chem
, vol.276
, pp. 37459-37471
-
-
Park, J.1
Hill, M.M.2
Hess, D.3
Brazil, D.P.4
Hofsteenge, J.5
Hemmings, B.A.6
-
182
-
-
0037338297
-
Data analysis-The Achilles heel of proteomics
-
Patterson SD. Data analysis-the Achilles heel of proteomics. Nat Biotechnol 21: 221-222, 2003.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 221-222
-
-
Patterson, S.D.1
-
184
-
-
0034111635
-
A thousand points of light: The application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics
-
Patton WF. A thousand points of light: the application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics. Electrophoresis 21: 1123-1144, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 1123-1144
-
-
Patton, W.F.1
-
185
-
-
0036669447
-
Two-dimensional gel electrophoresis: Better than a poke in the ICAT?
-
Patton WF, Schulenberg B, and Steinberg TH. Two-dimensional gel electrophoresis: better than a poke in the ICAT? Curr Opin Biotechnol 13: 321-328, 2002.
-
(2002)
Curr Opin Biotechnol
, vol.13
, pp. 321-328
-
-
Patton, W.F.1
Schulenberg, B.2
Steinberg, T.H.3
-
186
-
-
84885653762
-
A new mass spectrometer without magnetic field
-
Paul W and Steinwedel H. A new mass spectrometer without magnetic field. Z Naturforsch A 8: 448-450, 1953.
-
(1953)
Z Naturforsch A
, vol.8
, pp. 448-450
-
-
Paul, W.1
Steinwedel, H.2
-
187
-
-
0032560586
-
Unified inventory of established and putative transporters encoded within the complete genome of Saccharomyces cerevisiae
-
Paulsen IT, Sliwinski MK, Nelissen B, Goffeau A, and Saier MH Jr. Unified inventory of established and putative transporters encoded within the complete genome of Saccharomyces cerevisiae. FEBS Lett 430: 116-125, 1998.
-
(1998)
FEBS Lett
, vol.430
, pp. 116-125
-
-
Paulsen, I.T.1
Sliwinski, M.K.2
Nelissen, B.3
Goffeau, A.4
Saier Jr., M.H.5
-
188
-
-
0035666963
-
Proteomic patterns of nipple aspirate fluids obtained by SELDI-TOF: Potential for new biomarkers to aid in the diagnosis of breast cancer
-
Paweletz CP, Trock B, Pennanen M, Tsangaris T, Magnant C, Liotta LA, and Petricoin EF III. Proteomic patterns of nipple aspirate fluids obtained by SELDI-TOF: potential for new biomarkers to aid in the diagnosis of breast cancer. Dis Markers 17: 301-307, 2001.
-
(2001)
Dis Markers
, vol.17
, pp. 301-307
-
-
Paweletz, C.P.1
Trock, B.2
Pennanen, M.3
Tsangaris, T.4
Magnant, C.5
Liotta, L.A.6
Petricoin III, E.F.7
-
189
-
-
0037453510
-
Assembly of cell regulatory systems through protein interaction domains
-
Pawson T and Nash P. Assembly of cell regulatory systems through protein interaction domains. Science 300: 445-452, 2003.
-
(2003)
Science
, vol.300
, pp. 445-452
-
-
Pawson, T.1
Nash, P.2
-
190
-
-
0034757770
-
Proteomics: The move to mixtures
-
Peng J and Gygi SP. Proteomics: the move to mixtures. J Mass Spectrom 36: 1083-1091, 2001.
-
(2001)
J Mass Spectrom
, vol.36
, pp. 1083-1091
-
-
Peng, J.1
Gygi, S.P.2
-
191
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins DN, Pappin DJ, Creasy DM, and Cottrell JS. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551-3567, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
192
-
-
0042868833
-
Counterpoint: The vision for a new diagnostic paradigm
-
Petricoin E III and Liotta LA. Counterpoint: the vision for a new diagnostic paradigm. Clin Chem 49: 1276-1278, 2003.
-
(2003)
Clin Chem
, vol.49
, pp. 1276-1278
-
-
Petricoin III, E.1
Liotta, L.A.2
-
193
-
-
12444339443
-
The human serum proteome: Display of nearly 3700 chromatographically separated protein spots on two-dimensional electrophoresis gels and identification of 325 distinct proteins
-
Pieper R, Gatlin CL, Makusky AJ, Russo PS, Schatz CR, Miller SS, Su Q, McGrath AM, Estock MA, Parmar PP, Zhao M, Huang ST, Zhou J, Wang F, Esquer-Blasco R, Anderson NL, Taylor J, and Steiner S. The human serum proteome: display of nearly 3700 chromatographically separated protein spots on two-dimensional electrophoresis gels and identification of 325 distinct proteins. Proteomics 3: 1345-1364, 2003.
-
(2003)
Proteomics
, vol.3
, pp. 1345-1364
-
-
Pieper, R.1
Gatlin, C.L.2
Makusky, A.J.3
Russo, P.S.4
Schatz, C.R.5
Miller, S.S.6
Su, Q.7
McGrath, A.M.8
Estock, M.A.9
Parmar, P.P.10
Zhao, M.11
Huang, S.T.12
Zhou, J.13
Wang, F.14
Esquer-Blasco, R.15
Anderson, N.L.16
Taylor, J.17
Steiner, S.18
-
194
-
-
0031278536
-
Nongenetic variation, genetic-environmental interactions and altered gene expression. III. Posttranslational modifications
-
Poly WJ. Nongenetic variation, genetic-environmental interactions and altered gene expression. III. Posttranslational modifications. Camp Biochem Physiol A 118: 551-572, 1997.
-
(1997)
Camp Biochem Physiol A
, vol.118
, pp. 551-572
-
-
Poly, W.J.1
-
195
-
-
0033565503
-
Immobilized gallium(III) affinity chromatography of phosphopeptides
-
Posewitz MC and Tempst P. Immobilized gallium(III) affinity chromatography of phosphopeptides. Anal Chem 71: 2883-2892, 1999.
-
(1999)
Anal Chem
, vol.71
, pp. 2883-2892
-
-
Posewitz, M.C.1
Tempst, P.2
-
196
-
-
0037154107
-
Monitoring of gene expression by functional proteomics: Response of human lung fibroblast cells to stimulation by endothelin-1
-
Predic J, Soskic V, Bradley D, and Godovac-Zimmermann J. Monitoring of gene expression by functional proteomics: response of human lung fibroblast cells to stimulation by endothelin-1. Biochemistry 41: 1070-1078, 2002.
-
(2002)
Biochemistry
, vol.41
, pp. 1070-1078
-
-
Predic, J.1
Soskic, V.2
Bradley, D.3
Godovac-Zimmermann, J.4
-
197
-
-
0032911805
-
The alveolar space is the site of intense inflammatory and profibrotic reactions in the early phase of acute respiratory distress syndrome
-
Pugin J, Verghese G, Widmer MC, and Matthay MA. The alveolar space is the site of intense inflammatory and profibrotic reactions in the early phase of acute respiratory distress syndrome. Crit Care Med 27: 304-312, 1999.
-
(1999)
Crit Care Med
, vol.27
, pp. 304-312
-
-
Pugin, J.1
Verghese, G.2
Widmer, M.C.3
Matthay, M.A.4
-
198
-
-
0026733421
-
A comparison between low background silver diammine and silver nitrate protein stains
-
Rabilloud T. A comparison between low background silver diammine and silver nitrate protein stains. Electrophoresis 13: 429-439, 1992.
-
(1992)
Electrophoresis
, vol.13
, pp. 429-439
-
-
Rabilloud, T.1
-
199
-
-
0025053763
-
Mechanisms of protein silver staining in polyacrylamide gels: A 10-year synthesis
-
Rabilloud T. Mechanisms of protein silver staining in polyacrylamide gels: a 10-year synthesis. Electrophoresis 11: 785-794, 1990.
-
(1990)
Electrophoresis
, vol.11
, pp. 785-794
-
-
Rabilloud, T.1
-
200
-
-
0036208433
-
Two-dimensional gel electrophoresis in proteomics: Old, old fashioned, but it still climbs up the mountains
-
Rabilloud T. Two-dimensional gel electrophoresis in proteomics: old, old fashioned, but it still climbs up the mountains. Proteomics 2: 3-10, 2002.
-
(2002)
Proteomics
, vol.2
, pp. 3-10
-
-
Rabilloud, T.1
-
201
-
-
0030957650
-
Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilized pH gradients
-
Rabilloud T, Adessi C, Giraudel A, and Lunardi J. Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis 19: 307-316, 1997.
-
(1997)
Electrophoresis
, vol.19
, pp. 307-316
-
-
Rabilloud, T.1
Adessi, C.2
Giraudel, A.3
Lunardi, J.4
-
202
-
-
0036470450
-
What does it mean to identify a protein in proteomics?
-
Rappsilber J and Mann M. What does it mean to identify a protein in proteomics? Trends Biochem Sci 27: 74-78, 2002.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 74-78
-
-
Rappsilber, J.1
Mann, M.2
-
203
-
-
0022204452
-
Estimation of volume of epithelial lining fluid by lavage using urea as marker of dilution
-
Rennard SI. Estimation of volume of epithelial lining fluid by lavage using urea as marker of dilution. J Appl Physiol 60: 532-538, 1986.
-
(1986)
J Appl Physiol
, vol.60
, pp. 532-538
-
-
Rennard, S.I.1
-
204
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, and Seraphin B. A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17: 1030-1032, 1999.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
205
-
-
84987419408
-
Proposal for a common nomenclature for sequence ions in mass spectra of peptides
-
Roepstorff P and Fohlman J. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 11: 601, 1984.
-
(1984)
Biomed Mass Spectrom
, vol.11
, pp. 601
-
-
Roepstorff, P.1
Fohlman, J.2
-
206
-
-
0036462601
-
Protein N-glycosylation along the secretory pathway: Relationship to organelle topography and function, protein quality control, and cell interactions
-
Roth J. Protein N-glycosylation along the secretory pathway: relationship to organelle topography and function, protein quality control, and cell interactions. Chem Rev 102: 285-303, 2002.
-
(2002)
Chem Rev
, vol.102
, pp. 285-303
-
-
Roth, J.1
-
207
-
-
70449626815
-
Detection and identification of human bronchoalveolar lavage proteins using narrow-range immobilized pH gradient DryStrip and the paper bridge sample application method
-
Sabounchi-Schutt F, Astrom J, Eklund A, Grunewald J, and Bjellqvist B. Detection and identification of human bronchoalveolar lavage proteins using narrow-range immobilized pH gradient DryStrip and the paper bridge sample application method. Electrophoresis 22: 1851-1860, 2001.
-
(2001)
Electrophoresis
, vol.22
, pp. 1851-1860
-
-
Sabounchi-Schutt, F.1
Astrom, J.2
Eklund, A.3
Grunewald, J.4
Bjellqvist, B.5
-
208
-
-
0033662167
-
An immobiline DryStrip application method enabling high-capacity two-dimensional gel electrophoresis
-
Sabounchi-Schutt F, Astrom J, Ollsson I, Eklund A, Grunewald J, and Bjellqvist B. An immobiline DryStrip application method enabling high-capacity two-dimensional gel electrophoresis. Electrophoresis 21: 3649-3656, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 3649-3656
-
-
Sabounchi-Schutt, F.1
Astrom, J.2
Ollsson, I.3
Eklund, A.4
Grunewald, J.5
Bjellqvist, B.6
-
209
-
-
0032869010
-
Terminal glycosylation in cystic fibrosis
-
Scanlin TF and Glick MC. Terminal glycosylation in cystic fibrosis. Biochim Biophys Acta 1455: 241-253, 1999.
-
(1999)
Biochim Biophys Acta
, vol.1455
, pp. 241-253
-
-
Scanlin, T.F.1
Glick, M.C.2
-
210
-
-
0027164481
-
Detection of nonvolatile macromolecules in breath. A possible diagnostic tool?
-
Scheideler L, Manke HG, Schwulera U, Inacker O, and Hammerle H. Detection of nonvolatile macromolecules in breath. A possible diagnostic tool? Am Rev Respir Dis 148: 778-784, 1993.
-
(1993)
Am Rev Respir Dis
, vol.148
, pp. 778-784
-
-
Scheideler, L.1
Manke, H.G.2
Schwulera, U.3
Inacker, O.4
Hammerle, H.5
-
211
-
-
0031841153
-
Peptide mass fingerprint sequence coverage from differently stained proteins on two-dimensional electrophoresis patterns by matrix assisted laser desorption/ionization-mass spectrometry (MALDI-MS)
-
Scheler C, Lamer S, Pan Z, Li XP, Salnikow J, and Jungblut P. Peptide mass fingerprint sequence coverage from differently stained proteins on two-dimensional electrophoresis patterns by matrix assisted laser desorption/ionization-mass spectrometry (MALDI-MS). Electrophoresis 19: 918-927, 1998.
-
(1998)
Electrophoresis
, vol.19
, pp. 918-927
-
-
Scheler, C.1
Lamer, S.2
Pan, Z.3
Li, X.P.4
Salnikow, J.5
Jungblut, P.6
-
212
-
-
0035861987
-
Binding of neural cell adhesion molecules (N-CAMs) to the cellular prion protein
-
Schmitt-Ulms G, Legname G, Baldwin MA, Ball HL, Bradon N, Bosque PJ, Crossin KL, Edelman GM, DeArmond SJ, Cohen FE, and Prusiner SB. Binding of neural cell adhesion molecules (N-CAMs) to the cellular prion protein. J Mol Biol 314: 1209-1225, 2001.
-
(2001)
J Mol Biol
, vol.314
, pp. 1209-1225
-
-
Schmitt-Ulms, G.1
Legname, G.2
Baldwin, M.A.3
Ball, H.L.4
Bradon, N.5
Bosque, P.J.6
Crossin, K.L.7
Edelman, G.M.8
DeArmond, S.J.9
Cohen, F.E.10
Prusiner, S.B.11
-
213
-
-
0037310184
-
Review of proteomics with applications to genetic epidemiology
-
Sellers TA and Yates JR. Review of proteomics with applications to genetic epidemiology. Genet Epidemiol 24: 83-98, 2003.
-
(2003)
Genet Epidemiol
, vol.24
, pp. 83-98
-
-
Sellers, T.A.1
Yates, J.R.2
-
214
-
-
0034193643
-
High-efficiency capillary isoelectric focusing of peptides
-
Shen Y, Berger SJ, Anderson GA, and Smith RD. High-efficiency capillary isoelectric focusing of peptides. Anal Chem 72: 2154-2159, 2000.
-
(2000)
Anal Chem
, vol.72
, pp. 2154-2159
-
-
Shen, Y.1
Berger, S.J.2
Anderson, G.A.3
Smith, R.D.4
-
215
-
-
0037102411
-
High-efficiency nanoscale liquid chromatography coupled on-line with mass spectrometry using nanoelectrospray ionization for proteomics
-
Shen Y, Zhao R, Berger SJ, Anderson GA, Rodriguez N, and Smith RD. High-efficiency nanoscale liquid chromatography coupled on-line with mass spectrometry using nanoelectrospray ionization for proteomics. Anal Chem 74: 4235-4249, 2002.
-
(2002)
Anal Chem
, vol.74
, pp. 4235-4249
-
-
Shen, Y.1
Zhao, R.2
Berger, S.J.3
Anderson, G.A.4
Rodriguez, N.5
Smith, R.D.6
-
216
-
-
10544244161
-
Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels
-
Shevchenko A, Jensen ON, Podtelejnikov AV, Sagliocco F, Wilm M, Vorm O, Mortensen P, Boucherie H, and Mann M. Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels. Proc Natl Acad Sci USA 93: 14440-14445, 1996.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 14440-14445
-
-
Shevchenko, A.1
Jensen, O.N.2
Podtelejnikov, A.V.3
Sagliocco, F.4
Wilm, M.5
Vorm, O.6
Mortensen, P.7
Boucherie, H.8
Mann, M.9
-
217
-
-
0034194446
-
MALDI quadrupole time-of-flight mass spectrometry: A powerful tool for proteomic research
-
Shevchenko A, Loboda A, Ens W, and Standing KG. MALDI quadrupole time-of-flight mass spectrometry: a powerful tool for proteomic research. Anal Chem 72: 2132-2141, 2000.
-
(2000)
Anal Chem
, vol.72
, pp. 2132-2141
-
-
Shevchenko, A.1
Loboda, A.2
Ens, W.3
Standing, K.G.4
-
218
-
-
0029927505
-
Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels
-
Shevchenko A, Wilm M, Vorm O, and Mann M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem 68: 850-858, 1996.
-
(1996)
Anal Chem
, vol.68
, pp. 850-858
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Mann, M.4
-
219
-
-
0036792719
-
Quantitative proteomic analysis of Myc oncoprotein function
-
Shiio Y, Donohoe S, Yi EC, Goodlett DR, Aebersold R, and Eisenman RN. Quantitative proteomic analysis of Myc oncoprotein function. EMBO J 21: 5088-5096, 2002.
-
(2002)
EMBO J
, vol.21
, pp. 5088-5096
-
-
Shiio, Y.1
Donohoe, S.2
Yi, E.C.3
Goodlett, D.R.4
Aebersold, R.5
Eisenman, R.N.6
-
220
-
-
0036273209
-
Mapping phosphorylation sites in proteins by mass spectrometry
-
Shou W, Verma R, Annan RS, Huddleston MJ, Chen SL, Carr SA, and Deshaies RJ. Mapping phosphorylation sites in proteins by mass spectrometry. Methods Enzymol 351: 279-296, 2002.
-
(2002)
Methods Enzymol
, vol.351
, pp. 279-296
-
-
Shou, W.1
Verma, R.2
Annan, R.S.3
Huddleston, M.J.4
Chen, S.L.5
Carr, S.A.6
Deshaies, R.J.7
-
221
-
-
0031007780
-
Evidence for a hydrostatic mechanism in human neurogenic pulmonary edema
-
Smith WS and Matthay MA. Evidence for a hydrostatic mechanism in human neurogenic pulmonary edema. Chest 111: 1326-1333, 1997.
-
(1997)
Chest
, vol.111
, pp. 1326-1333
-
-
Smith, W.S.1
Matthay, M.A.2
-
222
-
-
0036049889
-
Quantitative protein profiling using two-dimensional gel electrophoresis, isotope-coded affinity tag labeling, and mass spectrometry
-
Smolka M, Zhou H, and Aebersold R. Quantitative protein profiling using two-dimensional gel electrophoresis, isotope-coded affinity tag labeling, and mass spectrometry. Mol Cell Proteomics 1: 19-29, 2002.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 19-29
-
-
Smolka, M.1
Zhou, H.2
Aebersold, R.3
-
223
-
-
0035477025
-
Optimization of the isotope-coded affinity tag-labeling procedure for quantitative proteome analysis
-
Smolka MB, Zhou H, Purkayastha S, and Aebersold R. Optimization of the isotope-coded affinity tag-labeling procedure for quantitative proteome analysis. Anal Biochem 297: 25-31, 2001.
-
(2001)
Anal Biochem
, vol.297
, pp. 25-31
-
-
Smolka, M.B.1
Zhou, H.2
Purkayastha, S.3
Aebersold, R.4
-
224
-
-
0034659494
-
Role of aquaporins in alveolar fluid clearance in neonatal and adult lung, and in oedema formation following acute lung injury: Studies in transgenic aquaporin null mice
-
Song Y, Fukuda N, Bai C, Ma T, Matthay MA, and Verkman AS. Role of aquaporins in alveolar fluid clearance in neonatal and adult lung, and in oedema formation following acute lung injury: studies in transgenic aquaporin null mice. J Physiol 525: 771-779, 2000.
-
(2000)
J Physiol
, vol.525
, pp. 771-779
-
-
Song, Y.1
Fukuda, N.2
Bai, C.3
Ma, T.4
Matthay, M.A.5
Verkman, A.S.6
-
225
-
-
0029088074
-
Sputum induction: A method to assess airway inflammation in asthma
-
Spanevello A, Migliori GB, Satta A, Neri M, and Ind PW. Sputum induction: a method to assess airway inflammation in asthma. Monaldi Arch Chest Dis 50: 208-210, 1995.
-
(1995)
Monaldi Arch Chest Dis
, vol.50
, pp. 208-210
-
-
Spanevello, A.1
Migliori, G.B.2
Satta, A.3
Neri, M.4
Ind, P.W.5
-
226
-
-
0036019907
-
Protein glycosylation: Nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds
-
Spiro RG. Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds. Glycobiology 12: 43R-56R, 2002.
-
(2002)
Glycobiology
, vol.12
-
-
Spiro, R.G.1
-
227
-
-
0036320438
-
Proteomics for cancer biomarker discovery
-
Srinivas PR, Verma M, Zhao Y, and Srivastava S. Proteomics for cancer biomarker discovery. Clin Chem 48: 1160-1169, 2002.
-
(2002)
Clin Chem
, vol.48
, pp. 1160-1169
-
-
Srinivas, P.R.1
Verma, M.2
Zhao, Y.3
Srivastava, S.4
-
228
-
-
0035298820
-
Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode
-
Steen H, Kuster B, Fernandez M, Pandey A, and Mann M. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode, Anal Chem 73: 1440-1448, 2001.
-
(2001)
Anal Chem
, vol.73
, pp. 1440-1448
-
-
Steen, H.1
Kuster, B.2
Fernandez, M.3
Pandey, A.4
Mann, M.5
-
229
-
-
0033999728
-
Ultrasensitive fluorescence protein detection in isoelectric focusing gels using a ruthenium metal chelate stain
-
Steinberg TH, Chernokalskaya E, Berggren K, Lopez MF, Diwu Z, Haugland RP, and Patton WF. Ultrasensitive fluorescence protein detection in isoelectric focusing gels using a ruthenium metal chelate stain, Electrophoresis 21: 486-496, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 486-496
-
-
Steinberg, T.H.1
Chernokalskaya, E.2
Berggren, K.3
Lopez, M.F.4
Diwu, Z.5
Haugland, R.P.6
Patton, W.F.7
-
230
-
-
0034002993
-
Fluorescence detection of proteins in sodium dodecyl sulfate- polyacrylamide gels using environmentally benign, nonfixative, saline solution
-
Steinberg TH, Lauber WM, Berggren K, Kemper C, Yue S, and Patton WF. Fluorescence detection of proteins in sodium dodecyl sulfate-polyacrylamide gels using environmentally benign, nonfixative, saline solution. Electrophoresis 21: 497-508, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 497-508
-
-
Steinberg, T.H.1
Lauber, W.M.2
Berggren, K.3
Kemper, C.4
Yue, S.5
Patton, W.F.6
-
231
-
-
0033551196
-
Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions
-
Stimson E, Hope J, Chong A, and Burlingame AL. Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions. Biochemistry 38: 4885-4895, 1999.
-
(1999)
Biochemistry
, vol.38
, pp. 4885-4895
-
-
Stimson, E.1
Hope, J.2
Chong, A.3
Burlingame, A.L.4
-
232
-
-
0035048372
-
Imaging mass spectrometry: A new technology for the analysis of protein expression in mammalian tissues
-
Stoeckli M, Chaurand P, Hallahan DE, and Caprioli RM. Imaging mass spectrometry: a new technology for the analysis of protein expression in mammalian tissues. Nat Med 7: 493-496, 2001.
-
(2001)
Nat Med
, vol.7
, pp. 493-496
-
-
Stoeckli, M.1
Chaurand, P.2
Hallahan, D.E.3
Caprioli, R.M.4
-
233
-
-
14744287564
-
Epigenesis: The missing beat in biotechnology?
-
Strohman R. Epigenesis: the missing beat in biotechnology? Biotechnology 12: 156-164, 1994.
-
(1994)
Biotechnology
, vol.12
, pp. 156-164
-
-
Strohman, R.1
-
234
-
-
0030998782
-
Experimental and numerical studies of the chromatofocusing of dilute proteins using retained pH gradients formed on a strong-base anion-exchange column
-
Strong JC and Frey DD. Experimental and numerical studies of the chromatofocusing of dilute proteins using retained pH gradients formed on a strong-base anion-exchange column. J Chromatogr A 769: 129-143, 1997.
-
(1997)
J Chromatogr A
, vol.769
, pp. 129-143
-
-
Strong, J.C.1
Frey, D.D.2
-
235
-
-
0018720271
-
A highly sensitive silver stain for detecting proteins and peptides in polyacrylamide gels
-
Switzer RC III, Merril CR, and Shifrin S. A highly sensitive silver stain for detecting proteins and peptides in polyacrylamide gels. Anal Biochem 98: 231-237, 1979.
-
(1979)
Anal Biochem
, vol.98
, pp. 231-237
-
-
Switzer III, R.C.1
Merril, C.R.2
Shifrin, S.3
-
236
-
-
0020039864
-
Design and implementation of a prototype human protein index
-
Taylor J, Anderson NL, Scandora AE Jr, Willard KE, and Anderson NG. Design and implementation of a prototype human protein index. Clin Chem 28: 861-866, 1982.
-
(1982)
Clin Chem
, vol.28
, pp. 861-866
-
-
Taylor, J.1
Anderson, N.L.2
Scandora Jr., A.E.3
Willard, K.E.4
Anderson, N.G.5
-
237
-
-
0038337889
-
Characterization of protein phosphorylation by mass spectrometry using immobilized metal ion affinity chromatography with on-resin β-elimination and Michael addition
-
Thompson AJ, Hart SR, Franz C, Barnouin K, Ridley A, and Cramer R. Characterization of protein phosphorylation by mass spectrometry using immobilized metal ion affinity chromatography with on-resin β-elimination and Michael addition. Anal Chem 75: 3232-3243, 2003.
-
(2003)
Anal Chem
, vol.75
, pp. 3232-3243
-
-
Thompson, A.J.1
Hart, S.R.2
Franz, C.3
Barnouin, K.4
Ridley, A.5
Cramer, R.6
-
238
-
-
0035289178
-
Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology
-
Tonge R, Shaw J, Middleton B, Rowlinson R, Rayner S, Young J, Pognan F, Hawkins E, Currie I, and Davison M. Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology. Proteomics 1: 377-396, 2001.
-
(2001)
Proteomics
, vol.1
, pp. 377-396
-
-
Tonge, R.1
Shaw, J.2
Middleton, B.3
Rowlinson, R.4
Rayner, S.5
Young, J.6
Pognan, F.7
Hawkins, E.8
Currie, I.9
Davison, M.10
-
239
-
-
0037434980
-
From genomics to proteomics
-
Tyers M and Mann M. From genomics to proteomics. Nature 422: 193-197, 2003.
-
(2003)
Nature
, vol.422
, pp. 193-197
-
-
Tyers, M.1
Mann, M.2
-
240
-
-
0343376097
-
Difference gel electrophoresis: A single gel method for detecting changes in protein extracts
-
Unlu M, Morgan ME, and Minden JS. Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18: 2071-2077, 1997.
-
(1997)
Electrophoresis
, vol.18
, pp. 2071-2077
-
-
Unlu, M.1
Morgan, M.E.2
Minden, J.S.3
-
241
-
-
0017705507
-
Posttranslational covalent modification of proteins
-
Uy R and Wold F. Posttranslational covalent modification of proteins. Science 198: 890-896, 1977.
-
(1977)
Science
, vol.198
, pp. 890-896
-
-
Uy, R.1
Wold, F.2
-
242
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigo R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, and Zhu X. The sequence of the human genome. Science 291: 1304-1351, 2001.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Gabor Miklos, G.L.24
Nelson, C.25
Broder, S.26
Clark, A.G.27
Nadeau, J.28
McKusick, V.A.29
Zinder, N.30
Levine, A.J.31
Roberts, R.J.32
Simon, M.33
Slayman, C.34
Hunkapiller, M.35
Bolanos, R.36
Delcher, A.37
Dew, I.38
Fasulo, D.39
Flanigan, M.40
Florea, L.41
Halpern, A.42
Hannenhalli, S.43
Kravitz, S.44
Levy, S.45
Mobarry, C.46
Reinert, K.47
Remington, K.48
Abu-Threideh, J.49
Beasley, E.50
Biddick, K.51
Bonazzi, V.52
Brandon, R.53
Cargill, M.54
Chandramouliswaran, I.55
Charlab, R.56
Chaturvedi, K.57
Deng, Z.58
Di Francesco, V.59
Dunn, P.60
Eilbeck, K.61
Evangelista, C.62
Gabrielian, A.E.63
Gan, W.64
Ge, W.65
Gong, F.66
Gu, Z.67
Guan, P.68
Heiman, T.J.69
Higgins, M.E.70
Ji, R.R.71
Ke, Z.72
Ketchum, K.A.73
Lai, Z.74
Lei, Y.75
Li, Z.76
Li, J.77
Liang, Y.78
Lin, X.79
Lu, F.80
Merkulov, G.V.81
Milshina, N.82
Moore, H.M.83
Naik, A.K.84
Narayan, V.A.85
Neelam, B.86
Nusskern, D.87
Rusch, D.B.88
Salzberg, S.89
Shao, W.90
Shue, B.91
Sun, J.92
Wang, Z.93
Wang, A.94
Wang, X.95
Wang, J.96
Wei, M.97
Wides, R.98
Xiao, C.99
more..
-
243
-
-
0031847251
-
Hepatocyte growth factor and keratinocyte growth factor in the pulmonary edema fluid of patients with acute lung injury. Biologic and clinical significance
-
Verghese GM, McCormick-Shannon K, Mason RJ, and Matthay MA. Hepatocyte growth factor and keratinocyte growth factor in the pulmonary edema fluid of patients with acute lung injury. Biologic and clinical significance. Am J Respir Crit Care Med 158: 386-394, 1998.
-
(1998)
Am J Respir Crit Care Med
, vol.158
, pp. 386-394
-
-
Verghese, G.M.1
McCormick-Shannon, K.2
Mason, R.J.3
Matthay, M.A.4
-
244
-
-
0034786280
-
Bioinformatics in proteomics
-
Vihinen M. Bioinformatics in proteomics. Biomol Eng 18: 241-248, 2001.
-
(2001)
Biomol Eng
, vol.18
, pp. 241-248
-
-
Vihinen, M.1
-
245
-
-
0035009584
-
Surfactant protein A and other bronchoalveolar lavage fluid proteins are altered in cystic fibrosis
-
Von Bredow C, Birrer P, and Griese M. Surfactant protein A and other bronchoalveolar lavage fluid proteins are altered in cystic fibrosis. Eur Respir J 17: 716-722, 2001.
-
(2001)
Eur Respir J
, vol.17
, pp. 716-722
-
-
Von Bredow, C.1
Birrer, P.2
Griese, M.3
-
246
-
-
0036535357
-
Analysis of quantitative proteomic data generated via multidimensional protein identification technology
-
Washburn MP, Ulaszek R, Deciu C, Schieltz DM, and Yates JR III. Analysis of quantitative proteomic data generated via multidimensional protein identification technology. Anal Chem 74: 1650-1657, 2002.
-
(2002)
Anal Chem
, vol.74
, pp. 1650-1657
-
-
Washburn, M.P.1
Ulaszek, R.2
Deciu, C.3
Schieltz, D.M.4
Yates III, J.R.5
-
247
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn MP, Wolters D, and Yates JR III. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19: 242-247, 2001.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates III, J.R.3
-
248
-
-
0033978729
-
Proteomic approach to the identification of cell membrane proteins
-
Watarai H, Inagaki Y, Kubota N, Fuju K, Nagafune J, Yamaguchi Y, and Kadoya T. Proteomic approach to the identification of cell membrane proteins. Electrophoresis 21: 460-464, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 460-464
-
-
Watarai, H.1
Inagaki, Y.2
Kubota, N.3
Fuju, K.4
Nagafune, J.5
Yamaguchi, Y.6
Kadoya, T.7
-
249
-
-
0033000140
-
Human bronchoalveolar lavage fluid: Two-dimensional gel electrophoresis, amino acid microsequencing and identification of major proteins
-
Wattiez R, Hermans C, Bernard A, Lesur O, and Falmagne P. Human bronchoalveolar lavage fluid: two-dimensional gel electrophoresis, amino acid microsequencing and identification of major proteins. Electrophoresis 20: 1634-1645, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 1634-1645
-
-
Wattiez, R.1
Hermans, C.2
Bernard, A.3
Lesur, O.4
Falmagne, P.5
-
250
-
-
0033846377
-
Human bronchoalveolar lavage fluid protein two-dimensional database: Study of interstitial lung diseases
-
Wattiez R, Hermans C, Cruyt C, Bernard A, and Falmagne P. Human bronchoalveolar lavage fluid protein two-dimensional database: study of interstitial lung diseases. Electrophoresis 21: 2703-2712, 2000.
-
(2000)
Electrophoresis
, vol.21
, pp. 2703-2712
-
-
Wattiez, R.1
Hermans, C.2
Cruyt, C.3
Bernard, A.4
Falmagne, P.5
-
251
-
-
0035095051
-
Proteomics-The protein expression technology to study connective tissue biology
-
Westergren-Thorsson G, Malmstrom J, and Marko-Varga G. Proteomics-the protein expression technology to study connective tissue biology. J Pharm Biomed Anal 24: 815-824, 2001.
-
(2001)
J Pharm Biomed Anal
, vol.24
, pp. 815-824
-
-
Westergren-Thorsson, G.1
Malmstrom, J.2
Marko-Varga, G.3
-
252
-
-
0033546122
-
High-throughput mass spectrometric discovery of protein post-translational modifications
-
Wilkins MR, Gasteiger E, Gooley AA, Herbert BR, Molloy MP, Binz PA, Ou K, Sanchez JC, Bairoch A, Williams KL, and Hochstrasser DF. High-throughput mass spectrometric discovery of protein post-translational modifications. J Mol Biol 289: 645-657, 1999.
-
(1999)
J Mol Biol
, vol.289
, pp. 645-657
-
-
Wilkins, M.R.1
Gasteiger, E.2
Gooley, A.A.3
Herbert, B.R.4
Molloy, M.P.5
Binz, P.A.6
Ou, K.7
Sanchez, J.C.8
Bairoch, A.9
Williams, K.L.10
Hochstrasser, D.F.11
-
253
-
-
0030333694
-
Progress with proteome projects: Why all proteins expressed by a genome should be identified and how to do it
-
Wilkins MR, Sanchez JC, Gooley AA, Appel RD, Humphery-Smith I, Hochstrasser DF, and Williams KL. Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. Biotechnol Genet Eng Rev 13: 19-50, 1996.
-
(1996)
Biotechnol Genet Eng Rev
, vol.13
, pp. 19-50
-
-
Wilkins, M.R.1
Sanchez, J.C.2
Gooley, A.A.3
Appel, R.D.4
Humphery-Smith, I.5
Hochstrasser, D.F.6
Williams, K.L.7
-
254
-
-
17144469961
-
Proteomic analysis of simulated occupational jet fuel exposure in the lung
-
Witzmann FA, Bauer MD, Fieno AM, Grant RA, Keough TW, Kornguth SE, Lacey MP, Siegel FL, Sun Y, Wright LS, Young RS, and Witten ML. Proteomic analysis of simulated occupational jet fuel exposure in the lung. Electrophoresis 20: 3659-3669, 1999.
-
(1999)
Electrophoresis
, vol.20
, pp. 3659-3669
-
-
Witzmann, F.A.1
Bauer, M.D.2
Fieno, A.M.3
Grant, R.A.4
Keough, T.W.5
Kornguth, S.E.6
Lacey, M.P.7
Siegel, F.L.8
Sun, Y.9
Wright, L.S.10
Young, R.S.11
Witten, M.L.12
-
255
-
-
0019376492
-
In vivo chemical modification of proteins (post-translational modification)
-
Wold F. In vivo chemical modification of proteins (post-translational modification). Annu Rev Biochem 50: 783-814, 1981.
-
(1981)
Annu Rev Biochem
, vol.50
, pp. 783-814
-
-
Wold, F.1
-
256
-
-
85012790109
-
A short stroll through the posttranslational zoo
-
Wold F and Moldave K. A short stroll through the posttranslational zoo. Methods Enzymol 107: xiii-xvi, 1984.
-
(1984)
Methods Enzymol
, vol.107
-
-
Wold, F.1
Moldave, K.2
-
257
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
Wolters DA, Washburn MP, and Yates JR III. An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem 73: 5683-5690, 2001.
-
(2001)
Anal Chem
, vol.73
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates III, J.R.3
-
258
-
-
0036624537
-
Shotgun proteomics: Tools for the analysis of complex biological systems
-
Wu CC and MacCoss MJ. Shotgun proteomics: tools for the analysis of complex biological systems. Curr Opin Mol Ther 4: 242-250, 2002.
-
(2002)
Curr Opin Mol Ther
, vol.4
, pp. 242-250
-
-
Wu, C.C.1
MacCoss, M.J.2
-
259
-
-
0034582184
-
Detection and sequencing of phosphopeptides affinity bound to immobilized metal ion beads by matrix-assisted laser desorption/ionization mass spectrometry
-
Xhou W, Merrick BA, Khaledi MG, and Tomer KB. Detection and sequencing of phosphopeptides affinity bound to immobilized metal ion beads by matrix-assisted laser desorption/ionization mass spectrometry. J Am Soc Mass Spectrom 11: 273-282, 2000.
-
(2000)
J Am Soc Mass Spectrom
, vol.11
, pp. 273-282
-
-
Xhou, W.1
Merrick, B.A.2
Khaledi, M.G.3
Tomer, K.B.4
-
260
-
-
0043166912
-
Protein microarrays using liquid phase fractionation of cell lysates
-
Yan F, Sreekumar A, Laxman B, Chinnaiyan AM, Lubman DM, and Barder TJ. Protein microarrays using liquid phase fractionation of cell lysates. Proteomics 3: 1228-1235, 2003.
-
(2003)
Proteomics
, vol.3
, pp. 1228-1235
-
-
Yan, F.1
Sreekumar, A.2
Laxman, B.3
Chinnaiyan, A.M.4
Lubman, D.M.5
Barder, T.J.6
-
261
-
-
0037953157
-
A comparison of drug-treated and untreated HCT-116 human colon adenocarcinoma cells using a 2-D liquid separation mapping method based upon chromatofocusing PI fractionation
-
Yan F, Subramanian B, Nakeff A, Barder TJ, Parus SJ, and Lubman DM. A comparison of drug-treated and untreated HCT-116 human colon adenocarcinoma cells using a 2-D liquid separation mapping method based upon chromatofocusing PI fractionation. Anal Chem 75: 2299-2308, 2003.
-
(2003)
Anal Chem
, vol.75
, pp. 2299-2308
-
-
Yan, F.1
Subramanian, B.2
Nakeff, A.3
Barder, T.J.4
Parus, S.J.5
Lubman, D.M.6
-
263
-
-
0041735992
-
Proteomic patterns of tumour subsets in non-small-cell lung cancer
-
Yanagisawa K, Shyr Y, Xu BJ, Massion PP, Larsen PH, White BC, Roberts JR, Edgerton M, Gonzalez A, Nadaf S, Moore JH, Caprioli RM, and Carbone DP. Proteomic patterns of tumour subsets in non-small-cell lung cancer. Lancet 362: 433-439, 2003.
-
(2003)
Lancet
, vol.362
, pp. 433-439
-
-
Yanagisawa, K.1
Shyr, Y.2
Xu, B.J.3
Massion, P.P.4
Larsen, P.H.5
White, B.C.6
Roberts, J.R.7
Edgerton, M.8
Gonzalez, A.9
Nadaf, S.10
Moore, J.H.11
Caprioli, R.M.12
Carbone, D.P.13
-
264
-
-
0033621537
-
Mass spectrometry. From genomics to proteomics
-
Yates JR III, Mass spectrometry. From genomics to proteomics. Trends Genet 16: 5-8, 2000.
-
(2000)
Trends Genet
, vol.16
, pp. 5-8
-
-
Yates III, J.R.1
-
265
-
-
0029645432
-
Mining genomes: Correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases
-
Yates JR III, Eng JK, and McCormack AL. Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases. Anal Chem 67: 3202-3210, 1995.
-
(1995)
Anal Chem
, vol.67
, pp. 3202-3210
-
-
Yates III, J.R.1
Eng, J.K.2
McCormack, A.L.3
-
266
-
-
0027375364
-
Peptide mass maps: A highly informative approach to protein identification
-
Yates JR III, Speicher S, Griffin PR, and Hunkapiller T. Peptide mass maps: a highly informative approach to protein identification. Anal Biochem 214: 397-408, 1993.
-
(1993)
Anal Biochem
, vol.214
, pp. 397-408
-
-
Yates III, J.R.1
Speicher, S.2
Griffin, P.R.3
Hunkapiller, T.4
-
267
-
-
0036645756
-
Improved sensitivity for phosphopeptide mapping using capillary colunm HPLC and microionspray mass spectrometry: Comparative phosphorylation site mapping from gel-derived proteins
-
Zappacosta F, Huddleston MJ, Karcher RL, Gelfand VI, Carr SA, and Annan RS. Improved sensitivity for phosphopeptide mapping using capillary colunm HPLC and microionspray mass spectrometry: comparative phosphorylation site mapping from gel-derived proteins. Anal Chem 74: 3221-3231, 2002.
-
(2002)
Anal Chem
, vol.74
, pp. 3221-3231
-
-
Zappacosta, F.1
Huddleston, M.J.2
Karcher, R.L.3
Gelfand, V.I.4
Carr, S.A.5
Annan, R.S.6
-
268
-
-
0038699625
-
Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
-
Zhang H, Li XJ, Martin DB, and Aebersold R. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat Biotechnol 21: 660-666, 2003.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 660-666
-
-
Zhang, H.1
Li, X.J.2
Martin, D.B.3
Aebersold, R.4
-
269
-
-
0036828999
-
Contribution of human α-defensin 1, 2, and 3 to the anti-HIV-1 activity of CD8 antiviral factor
-
Zhang L, Yu W, He T, Yu J, Caffrey RE, Dalmasso EA, Fu S, Pham T, Mei J, Ho JJ, Zhang W, Lopez P, and Ho DD. Contribution of human α-defensin 1, 2, and 3 to the anti-HIV-1 activity of CD8 antiviral factor. Science 298: 995-1000, 2002.
-
(2002)
Science
, vol.298
, pp. 995-1000
-
-
Zhang, L.1
Yu, W.2
He, T.3
Yu, J.4
Caffrey, R.E.5
Dalmasso, E.A.6
Fu, S.7
Pham, T.8
Mei, J.9
Ho, J.J.10
Zhang, W.11
Lopez, P.12
Ho, D.D.13
-
270
-
-
0035499083
-
Fractionation of isotopically labeled peptides in quantitative proteomics
-
Zhang R, Sioma CS, Wang S, and Regnier FE. Fractionation of isotopically labeled peptides in quantitative proteomics. Anal Chem 73: 5142-5149, 2001.
-
(2001)
Anal Chem
, vol.73
, pp. 5142-5149
-
-
Zhang, R.1
Sioma, C.S.2
Wang, S.3
Regnier, F.E.4
-
271
-
-
0034213595
-
ProFound: An expert system for protein identification using mass spectrometric peptide mapping information
-
Zhang W and Chait BT. ProFound: an expert system for protein identification using mass spectrometric peptide mapping information. Anal Chem 72: 2482-2489, 2000.
-
(2000)
Anal Chem
, vol.72
, pp. 2482-2489
-
-
Zhang, W.1
Chait, B.T.2
-
272
-
-
0035072715
-
A systematic approach to the analysis of protein phosphorylation
-
Zhou H, Watts JD, and Aebersold R. A systematic approach to the analysis of protein phosphorylation, Nat Biotechnol 19: 375-378, 2001.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 375-378
-
-
Zhou, H.1
Watts, J.D.2
Aebersold, R.3
-
273
-
-
0035135975
-
Increased levels of nitrate and surfactant protein A nitration in the pulmonary edema fluid of patients with acute lung injury
-
Zhu S, Ware LB, Geiser T, Matthay MA, and Matalon S. Increased levels of nitrate and surfactant protein A nitration in the pulmonary edema fluid of patients with acute lung injury. Am J Respir Crit Care Med 163: 166-172, 2001.
-
(2001)
Am J Respir Crit Care Med
, vol.163
, pp. 166-172
-
-
Zhu, S.1
Ware, L.B.2
Geiser, T.3
Matthay, M.A.4
Matalon, S.5
-
274
-
-
10744226861
-
Improved proteome analysis of Saccharommyces cerevisiae mitochondria by free-flow electrophoresis
-
Zischka H, Weber G, Weber PJ, Posch A, Braun RJ, Buhringer D, Schneider U, Nissum M, Meitinger T, Ueffing M, and Eckerskorn C. Improved proteome analysis of Saccharommyces cerevisiae mitochondria by free-flow electrophoresis. Proteomics 3: 906-916, 2003.
-
(2003)
Proteomics
, vol.3
, pp. 906-916
-
-
Zischka, H.1
Weber, G.2
Weber, P.J.3
Posch, A.4
Braun, R.J.5
Buhringer, D.6
Schneider, U.7
Nissum, M.8
Meitinger, T.9
Ueffing, M.10
Eckerskorn, C.11
|