Advances in proteome analysis by mass spectrometry

Current Opinion in Biotechnology

Volumn 12, Issue 6, 2001, Pages 607-612

  Griffin, Timothy J ^a   Goodlett, David R ^a   Aebersold, Ruedi ^a  

^a INSTITUTE FOR SYSTEMS BIOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

M PROTEIN; PEPTIDE;

BIOLOGY; CHEMICAL LABELING; GENE FUNCTION; HUMAN; INSTRUMENTATION; ISOTOPE LABELING; MASS SPECTROMETRY; METHODOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DETERMINATION; PROTEIN FUNCTION; PROTEIN ISOLATION; PROTEIN MODIFICATION; PROTEOMICS; QUANTITATIVE ASSAY; REVIEW;

EID: 0035712849     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0958-1669(01)00268-3     Document Type: Review

References (51)

1. The sequence of the human genome
2. Initial sequencing and analysis of the human genome
3. Mass spectrometry in proteomics
4. Mass spectrometry. From genomics to proteomics
5. Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level
6. Identification of gel-separated proteins by liquid chromatography-electrospray tandem mass spectrometry: Comparison of methods and their limitations
7. Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology
8. Towards high performance two-dimensional gel electrophoresis using ultrazoom gels
9. Membrane proteomics: Use of additive main effects with multiplicative interaction model to classify plasma membrane proteins according to their solubility and electrophoretic properties
10. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
11. Measuring gene expression by quantitative proteome analysis
12. Direct analysis of protein complexes using mass spectrometry
13. Large-scale analysis of the yeast proteome by multidimensional protein identification technology
14. Very high pressure gradient LC/MS/MS
15. Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for proteomics
16. Differential screening and mass mapping of proteins from premalignant and cancer cell lines using nonporous reversed-phase HPLC coupled with mass spectrometric analysis
17. Isoelectric focusing nonporous RP HPLC: A two-dimensional liquid-phase separation method for mapping of cellular proteins with identification using MALDI-TOF mass spectrometry
18. A rapid protein profiling system that speeds study of cancer and other diseases
19. Arrays for protein expression profiling: Towards a viable alternative to two-dimensional gel electrophoresis
20. Analysis of yeast protein kinases using protein chips
21. Imaging mass spectrometry: A new technology for the analysis of protein expression in mammalian tissues
22. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
23. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
24. 15N-metabolic labeling
25. Quantitation and facilitated de novo sequencing of proteins by isotopic N-terminal labeling of peptides with a fragmentation-directing moiety
26. 18O labeling for comparative proteomics: Model studies with two serotypes of adenovirus
27. Differential stable isotope labeling of peptides for quantification and de novo sequence derivation
28. Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis
29. A systematic approach to the analysis of protein phosphorylation
30. Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
31. Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses
32. Comparative quantification and identification of phosphoproteins using stable isotope labeling and liquid chromatography/mass spectrometry
33. Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode
34. Phosphopeptide/phosphoprotein mapping by electron capture dissociation mass spectrometry
35. A multidimensional electrospray MS-based approach to phosphopeptide mapping
36. A high-performance liquid chromatography based strategy for rapid, sensitive sequencing of N-linked oligosaccharide modifications to proteins in sodium dodecyl sulphate polyacrylamide electrophoresis gel bands
37. Immobilisation of antibodies in gels allows the improved release and identification of glycans
38. Lectin and carbohydrate affinity capture surfaces for mass spectrometric analysis of microorganisms
39. Analysis of N-linked oligosaccharides released from glycoproteins separated by two-dimensional gel electrophoresis
40. Electrospray mass spectrometry and fragmentation of N-linked carbohydrates derivatized at the reducing terminus
41. Mass spectrometric determination of O-glycosylation sites using β-elimination and partial acid hydrolysis
42. The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer
43. Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer
44. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching
45. Matrix-assisted laser desorption/ionization coupled with quadrupole/orthogonal acceleration time-of-flight mass spectrometry for protein discovery, identification, and structural analysis
46. Determination of the complete amino acid sequence for the coat protein of brome mosaic virus by time-of-flight mass spectrometry. Evidence for mutations associated with change of propagation host
47. Accurate mass multiplexed tandem mass spectrometry for high-throughput polypeptide identification from mixtures
48. High sensitivity Fourier transform ion cyclotron resonance mass spectrometry for biological analysis with nano-LC and microelectrospray ionization
49. Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI Fourier transform ion cyclotron resonance mass spectrometry
50. Attomole level protein sequencing by Edman degradation coupled with accelerator mass spectrometry
51. Automated de novo sequencing of proteins by tandem high-resolution mass spectrometry