Biodegradation of aromatic compounds by Escherichia coli

Microbiology and Molecular Biology Reviews

Volumn 65, Issue 4, 2001, Pages 523-569

  Diaz E ^a   Ferrandez A ^a   Prieto, M A ^a   Garcia J L ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

3 HYDROXYPHENYLACETIC ACID; 4 HYDROXYPHENYLACETIC ACID; AROMATIC COMPOUND; DOPAMINE; PHENETHYLAMINE; PHENYLACETIC ACID DERIVATIVE; PHENYLPROPIONIC ACID DERIVATIVE; TYRAMINE;

BACTERIAL COLONIZATION; BACTERIAL METABOLISM; BIODEGRADATION; BIOTRANSFORMATION; CATABOLISM; ENZYME ACTIVITY; ESCHERICHIA COLI; GENETIC ANALYSIS; NONHUMAN; REVIEW;

AMINES; BIODEGRADATION, ENVIRONMENTAL; BIOTECHNOLOGY; CARBOXYLIC ACIDS; CARRIER PROTEINS; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, BACTERIAL; HYDROCARBONS, AROMATIC;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0035195086     PISSN: 10922172     EISSN: None     Source Type: Journal    
DOI: 10.1128/MMBR.65.4.523-569.2001     Document Type: Review

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169. Purification, characterization, and stereochemical analysis of a C-C hydrolase: 2-hydroxy-6-keto-nona-2,4-diene-1,9-dioic acid 5,6-hydrolase
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174. The phn genes of Burkholderia sp. strain RP007 constitute a divergent gene cluster for polycyclic aromatic hydrocarbon catabolism
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176. A study of hybrids between two strains of Escherichia coli
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178. Decarboxylation of substituted cinnamic acids by Enterobacteria: The influence on beer flavour
179. Nitroreductase A is regulated as a member of the soxRS regulon of Escherichia coli
180. Nucleotide sequence of a cluster of Escherichia coli enterobactin biosynthesis genes: Identification of entA and purification of its product 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
181. The phenylacetyl-CoA catabolon: A complex catabolic unit with broad biotechnological applications
182. Mutational analysis of the highly conserved C-terminal residues of the XyS protein, a member of the AraC family of transcriptional regulators
183. Cloning and expression of the Escherichia coli K-12 sad gene
184. Catabolism of 3- and 4-hydroxyphenylacetic acid by Klebsiella pneumoniae
185. A novel aromatic-ring-hydroxylating dioxygenase from the diterpenoid-degrading bacterium Pseudomonas abietaniphila BKME-9
186. Purification and biochemical characterization of phenylacetyl-CoA ligase from Pseudomonas putida
187. Degradation of nitroaromatic compounds by microorganisms
188. The bphDEF meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphACB genes in Rhodococcus sp. strain RHA1
189. Generation of the topaquinone cofactor in bacterial monoamine oxidase by cupric ion-dependent autoxidation of a specific tyrosyl residue
190. Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three Salmonella enterica serovars, Typhimurium, Typhi and Paratyphi
191. Microbial transformation of 2,4,6-trinitrotoluene and other nitroaromatic compounds
192. Enzymatic decarboxylation of the aminobenzoates
193. Amino acids as carbon sources
194. 2) and ubiquinone (coenzyme Q)
195. Carbon regulation and the role in nature of the Escherichia coli penicillin acylase (pac) gene
196. New route to bacterial production of indigo
197. Physical characterisation of the Escherichia coli B gene encoding nitroreductase and its over-expression in Escherichia coli K12
198. Molecular cloning and expression in different microbes of the DNA encoding Pseudomonas putida U phenylacetyl-CoA ligase
199. Biochemical and molecular characterization of phenylacetate-coenzyme A ligase, an enzyme catalyzing the first step in aerobic metabolism of phenylacetic acid in Azoarcus evansii
200. Reinvestigation of a new type of aerobic benzoate metabolism in the proteobacterium Azoarcus evansii
201. Functional genomics of Escherichia coli in Japan
202. Detoxification of organophosphate nerve agents by immobilized Escherichia coli with surface-expressed organophosphorus hydrolase
203. Enoyl-CoA hydratase and isomerase form a superfamily with a common active-site glutamate residue
204. Construction of metabolic operons catalyzing the de novo biosynthesis of indigo in Escherichia coli
205. The active site base controls cofactors reactivity in Escherichia coli amine oxidase: X-ray crystallographic studies with mutational variants
206. Isolation and characterization of a light-sensitive mutant of Escherichia coli K-12 with a mutation in a gene that is required for the biosynthesis of ubiquinone
207. Codon usage tabulated from the international DNA sequence databases
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210. PcaK, a high-affinity permease for the aromatic compounds 4-hydroxybenzoate and protocatechuate from Pseudomonas putida
211. Benzoylcoenzyme-A 3-monooxygenase, a flavin-dependent hydroxylase. Purification, some properties and its role in aerobic benzoate oxidation via gentisate in a denitrifying bacterium
212. The hisT-purF region of the Escherichia coli K-12 chromosome. Identification of additional genes of the hisT and purF operons
213. Evolutionary dynamics of full genome content in Echerichia coli
214. Possible regulatory role for nonaromatic carbon sources in styrene degradation by Pseudomonas putida CA-3
215. Complete nucleotide sequence of the penicillin acylase gene and the flanking regions, and its expression in Escherichia coli
216. Molecular characterization of the phenylacetic acid catabolic pathway in Pseudomonas putida U: The phenylacetyl-CoA catabolon
217. Degradation of ferulic acid by Escherichia coli
218. Biochemical and genetic analyses of ferulic acid catabolism in Pseudomonas sp. strain HR199
219. An alkane-responsive expression system for the production of fine chemicals
220. Towards a biocatalyst for (S)-styrene oxide production: Characterization of the styrene degradation pathway of Pseudomonas sp. strain VLB120
221. Production of enantiopure styrene oxide by recombinant Escherichia coli synthesizing a two-component styrene monooxygenase
222. Major facilitator superfamily
223. Drug metabolism by Escherichia coli expressing human cytochromes P450
224. Production of L-DOPA (3,4-dihydroxyphenyl-L-alanine) from benzene by using a hybrid pathway
225. Characterization of PcaQ, a LysR-type transcriptional activator required for catabolism of phenolic compounds, from Agrobacterium tumefaciens
226. Bacteria are not what they eat: That is why they are so diverse
227. 2-Phenylethylamine catabolism by Escherichia coli K12
228. An NADPH:FAD oxidoreductase from the valanimycin producer Streptomyces viridifaciens
229. Crystal structure of a quinoenzyme:Copper amine oxidase of Escherichia coli at 2Å resolution
230. Cloning and characterization of arylamine N-acetyltransferase genes from Mycobacterium smegmatis and Mycobacterium tuberculosis: Increased expression results in isoniazid resistance
231. Eubacterial arylamine N-acetyltransferases - Identification and comparison of 18 members of the protein family with conserved active site cysteine, histidine and aspartate residues
232. What's for dinner? Entner-Doudoroff metabolism in Escherichia coli
233. Laboratory workhorse decoded
234. Caffeic acid metabolism by bacteria of the human gastrointestinal tract
235. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
236. Relationships within the aldehyde dehydrogenase extended family
237. Oxygen-sensitive and -insensitive nitroreduction by Escherichia coli and rat hepatic microsomes
238. Engineering bacteria for bioremediation
239. Biosynthesis of the aromatic amino acids
240. The 4-hydroxy2-oxovalerate aldolase and acetaldehyde dehydrogenase (acylating) encoded by the nahM and nahO genes of the naphthalene catabolic plasmid pWW60-W22 provide further evidence of conservation of meta-cleavage pathway gene sequences
241. Purification, characterisation and reaction mechanism of monofunctional 2-hydroxypentadienoic acid hydratase from Escherichia coli
242. Substrate selectivity and biochemical properties of 4-hydroxy-2-keto-pentanoic acid aldolase from Escherichia coli
243. Identification of Escherichia coli ubiB, a gene required for the first monooxygenase step in ubiquinone biosynthesis
244. Spatial distribution of Escherichia coli in the mouse large intestine inferred from rRNA in situ hybridization
245. Physiological state of Escherichia coli BJ4 growing in the large intestines of streptomycin-treated mice
246. Molecular characterisation of a Rhodococcus ohp operon
247. On the role of DmpK, an auxiliary protein associated with multicomponent phenol hydroxylase from Pseudomonas sp. strain CF600
248. Genetics and biochemistry of phenol degradation by Pseudomonas sp. CF600
249. Molecular characterization of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli W: Engineering a mobile aromatic degradative cluster
250. Molecular characterization of 4-hydroxyphenylacetate 3-hydroxylase of Escherichia coli
251. Identification of the 4-hydroxyphenylacetate transport gene of Escherichia coli W: Construction of a highly sensitive cellular biosensor
252. Identification of a novel positive regulator of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli
253. Characterization of an Escherichia coli aromatic hydroxylase with a broad substrate range
254. Solution structure of phenol hydroxylase protein component P2 determined by NMR spectroscopy
255. Suicide microbes on the loose
256. Conjugational transfer of recombinant DNA in cultures and in soils: Host range of Pseudomonas putida TOL plasmids
257. Development of a bioconversion process for production of cis-1S,2R-indandiol from indene by recombinant Escherichia coli constructs
258. Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly
259. Detection and distribution of insertion sequence 1 (IS1)-containing bacteria in the freshwater environment
260. Biodegradation of organophosphorous pesticides by surface-expressed organophosphorus hydrolase
261. Interim report on genomics of Escherichia coli
262. New insights into the regulation of the pac gene from Escherichia coli W ATCC 11105
263. In vitro formation of a catabolic plasmid carrying Klebsiella pneumoniae DNA that allows growth of Escherichia coli K-12 on 3-hydroxybenzoate
264. Escherichia coli K-12 copper-containing monoamine oxidase: Investigation of the copper binding ligands by site-directed mutagenesis, elemental analysis and TOPA quinone formation
265. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
266. Purification, some properties and nucleotide sequence of 5-carboxymethyl-2-hydroxymuconate isomerase of Escherichia coli C
267. Subcloning and nucleotide sequence of the 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3dioxygenase gene from Escherichia coli C
268. Purification, nucleotide sequence and some properties of a bifunctional isomerase/decarboxylase from the homoprotocatechuate degradative pathway of Escherichia coli C
269. The Escherichia coli C homoprotocatechuate degradative operon: Hpc gene order, direction of transcription and control of expression
270. Sequence of the hpcC and hpcG genes of the meta-fission homoprotocatechuic acid pathway of Escherichia coli C: Nearly 40% amino-acid identity with the analogous enzymes of the catechol pathway
271. 2-Oxo-1,2-dihydroquinoline 8-monooxygenase: Phylogenetic relationship to other multicomponent nonheme iron oxygenases
272. New tools for an old workhorse
273. Subcloning, expression, and purification of the enterobactin biosynthetic enzyme 2,3-dihydroxybenzoate-AMP-ligase: Demonstration of enzyme-bound (2,3-dihydroxybenzoyl) adenylate product
274. Molecular phylogeny as a basis for the classification of transport proteins from bacteria, archaea and eukarya
275. Mechanistic studies on trans-2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EntA) in the biosynthesis of the iron chelator enterobactin
276. Purification and properties of two succinic semialdehyde dehydrogenases from Klebsiella pneumoniae
277. A different approach to treatment of phenylketonuria: Phenylalanine degradation with recombinant phenylalanine ammonia lyase
278. Membrane topology analysis of Escherichia coli K-12 Mtr permease by alkaline phosphatase and β-galactosidase fusions
279. Microbial ecology of the gastrointestinal tract
280. Regulation of differentiated cell-specific functions
281. Microbial metabolism of amino alcohols. Ethanolamine catabolism mediated by coenzyme B12-dependent ethanolamine ammonia-lyase in Escherichia coli and Klebsiella aerogenes
282. Molecular biology of the LysR family of transcriptional regulators
283. Cloning and sequence analysis of genes for dehalogenation of 4-chlorobenzoate from Arthrobacter sp. strain SU
284. Anaerobic transformation of quercetin-3-glucoside by bacteria from human intestinal tract
285. The mercuric and organomercurial detoxifying enzymes from a plasmid-bearing strain of Escherichia coli
286. Biocatalysis for industrial production of fine chemicals
287. Purification and preliminary characterization of a serine hydrolase involved in the microbial degradation of polychlorinated biphenyls
288. Identification and characterization of genes (xapA, xapB, and xapR) involved in xanthosine catabolism in Escherichia coli
289. Use of ipb-lux fusion to study regulation of the isopropylbenzene catabolism operon of Pseudomonas putida RE204 and to detect hydrophobic pollutants in the environment
290. RNA expression analysis using a 30 base pair resolution Escherichia coli genome array
291. Bacterial resistances to toxic metal ions - A review
292. Enantioselective metabolism of chiral 3-phenylbutyric acid, an intermediate of linear alkylbenzene degradation by Rhodococcus rhodochrous PB1
293. Microbial degradation of the pesticide lindane (γ-hexachlorocyclohexane)
294. An Escherichia coli mutant defective in the NAD-dependent succinate semialdehyde dehydrogenase
295. Enumeration of human colonic bacteria producing phenolic and indolic compounds: Effects of pH, carbohydrate avalability and retention time on dissimilatory aromatic amino acid metabolims
296. Survival of orally administered E. coli K12 in alimentary tract of human
297. Catechol dioxygenases from Escherichia coli (MhpB) and Alcaligenes eutrophus (MpcI): Sequence analysis and biochemical properties of a third family of extradiol dioxygenases
298. Cloning the maoA gene that encodes aromatic amino oxidase of Escherichia coli W3350 and characterization of the overexpressed enzyme
299. DNA architecture and transcriptional regulation of the Escherichia coli penicillin amidase (pac) gene
300. Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen
301. The purification and properties of the flavoprotein melilotate hydroxylase
302. Sequence of the Escherichia coli C homoprotocatechuic acid degradative operon completed with that of the 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase-encoding gene (hpcH)
303. Enzymatic ketonization of 2-hydroxymuconate: Specificity and mechanism investigated by the crystal structures of two isomerases
304. 2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: Similarity to naphthalene dioxygenase
305. Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions
306. A monoamine-regulated Klebsiella aerogenes operon containing the monoamine oxidase structural gene (maoA) and the maoC gene
307. Penicillin V acylase crystal structure reveals new Ntn-hydrolase family members
308. Production of penicillin acylase
309. Sequencing of three lambda clones from the genome of alkaliphilic Bacillus sp. strain C-125
310. Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis
311. Crystal structure of 4-oxalocrotonate tautomerase inactivated by 2-oxo-3-pentynoate at 2.4 Å resolution: Analysis and implications for the mechanism of inactivation and catalysis
312. Designing microorganisms for the treatment of toxic wastes
313. A gene containment strategy based on a restriction-modification system
314. Molecular cloning of two (R)-specific enoyl-CoA hydratase genes from Pseudomonas aeruginosa and their use for polyhydroxyalkanoate synthesis
315. The production of phenol and para-cresol by marine bacteria
316. The role of penicllin amidase in nature and in industry
317. Crystal structure of FadR, a fatty acid-responsive transcription factor with a novel acyl coenzyme A-binding fold
318. The hybrid-cluster protein ('prismane protein') from Escherichia coli. Characterization of the hybrid-cluster protein, redox properties of the [2Fe-2S] and [4Fe-2S-20] clusters and identification of an associated NADH oxidoreductase containing FAD and [2Fe-2S]
319. Urinary and faecal excretion of metabolites of tyrosine and phenylalanine in patient with cystic fibrosis and severely impaired amino acid absortion
320. Molecular mechanisms of genetic adaptation to xenobiotic compounds
321. Dihydropteridine reductase from Escherichia coli
322. Active site residues of cis-2,3-dihydro-2,3-dihydroxybiphenyl dehydrogenase from Comamonas testosteroni strain B-356
323. Genetic and functional analysis of the styrene catabolic cluster of Pseudomonas sp. strain Y2
324. Genetics of ferulic acid bioconversion to protocatechuic acid in plantgrowth-promoting Pseudomonas putida WCS358
325. Purification and properties of coenzyme F390 hydrolase from Methanobacterium thermoautotrophicum (strain Marburg)
326. Structure, processing and catalytic action of penicillin acylase
327. Phenylacetate-coenzyme A ligase is induced during growth on phenylacetic acid in different bacteria of several genera
328. Biochemical and genetic characterization of a gentisate 1,2-dioxygenase from Sphingomonas sp. strain RW5
329. Transgenic commensals as mucosal protectants
330. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1
331. Oxygen-insensitive nitroreductases: Analysis of the roles of nfsA and
332. Manganese(II)-dependent extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis CM-2
333. Development and testing of a bacterial biosensor for toluene-based environmental contaminants
334. The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas
335. Visualization of dioxygen bound to copper during enzyme catalysis
336. Release of recombinant microorganisms
337. C-ring cleavage of flavonoids by human intestinal bacteria
338. Inherited differences in sensitivity to radiation in Escherichia coli
339. Characterization of 4-hydroxyphenylacetate 3-hydroxylase (HpaB) of Escherichia coli as a reduced flavin adenine dinucleotide-utilizing monooxygenase
340. Comparative immunological studies on arylsulfatase in bacteria of the family Enterobacteriaceae: Occurrence of latent arylsulfatase protein regulated by sulfur compounds and tyramine
341. maoB, a gene that encodes a positive regulator of the monoamine oxidase gene (maoA) in Escherichia coli
342. Physiological studies of tryptophan transport and tryptophanase operon induction in Escherichia coli
343. A novel pathway of aerobic benzoate catabolism in the bacteria Azoarcus evansii and Bacillus stearothermophilus
344. Procedure for the enzymatic synthesis and isolation of cinnamoyl-CoA thioesters using a bacterial system
345. Conversion of NfsA, the major Escherichia coli nitroreductase, to a flavin reductase with an activity similar to that of Frp, a flavin reductase in Vibrio harveyi, by a single amino acid substitution
346. Biochemical characterization of NfsA, the Escherichia coli major nitroreductase exhibiting a high amino acid sequence homology to Frp, a Vibrio harveyi flavin oxidoreductase
347. Use of cloned genes of Pseudomonas TOL plasmid to effect biotransformation of benzoates to cis-dihydrodiols and catechols by Escherichia coli cells
348. Identification of the ubiD gene on the Escherichia coli chromosome
349. 70 transcription factor TyrR has zinc-stimulated phosphatase activity that is inhibited by ATP and tyrosine
350. nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism