-
1
-
-
1842406595
-
Bacterial Interspersed Mosaic Elements (BIMEs) are a major source of sequence polymorphism in Escherichia coli intergenic regions including specific associations with a new insertion sequence
-
Bachellier S., Clément J.M., Hofnung M., Gilson E. Bacterial Interspersed Mosaic Elements (BIMEs) are a major source of sequence polymorphism in Escherichia coli intergenic regions including specific associations with a new insertion sequence. Genetics. 145:1997;551-562.
-
(1997)
Genetics
, vol.145
, pp. 551-562
-
-
Bachellier, S.1
Clément, J.M.2
Hofnung, M.3
Gilson, E.4
-
2
-
-
0000117110
-
-
F. Neidhardt, R. Curtiss III, C.A. Gross, J.L. Ingraham, C.C. Lin, K. Brooks Low Jr, B. Magasanik, W. Reznikoff, M. Riley, M. Schaechter, & H.E. Umbarger. ASM Press, Washington DC
-
Bachellier S., Gilson E., Hofnung M., Hill C.W. Neidhardt F, Curtiss III R, Gross C.A, Ingraham J.L, Lin E.C.C, Brooks Low Jr K, Magasanik B, Reznikoff W, Riley M, Schaechter M, Umbarger H.E. Escherichia coliandSalmonellaCellular and Molecular Biology. 1996;2012-2040 ASM Press, Washington DC.
-
(1996)
Escherichia Coliandsalmonellacellular and Molecular Biology
, pp. 2012-2040
-
-
Bachellier, S.1
Gilson, E.2
Hofnung, M.3
Hill, C.W.4
-
3
-
-
0027413111
-
Bacterial Interspersed Mosaic Elements (BIMEs) are present in the genome of Klebsiella
-
Bachellier S., Perrin D., Hofnung M., Gilson E. Bacterial Interspersed Mosaic Elements (BIMEs) are present in the genome of Klebsiella. Mol. Microbiol. 7:1993;537-544.
-
(1993)
Mol. Microbiol.
, vol.7
, pp. 537-544
-
-
Bachellier, S.1
Perrin, D.2
Hofnung, M.3
Gilson, E.4
-
4
-
-
0028278158
-
Structural and functional diversity among bacterial interspersed mosaic elements (BIMEs)
-
Bachellier S., Saurin W., Perrin D., Hofnung M., Gilson E. Structural and functional diversity among bacterial interspersed mosaic elements (BIMEs). Mol. Microbiol. 12:1994;61-70.
-
(1994)
Mol. Microbiol.
, vol.12
, pp. 61-70
-
-
Bachellier, S.1
Saurin, W.2
Perrin, D.3
Hofnung, M.4
Gilson, E.5
-
5
-
-
0027965024
-
Identification of VCR, a repeated sequence associated with a locus encoding a hemagglutinin in Vibrio cholerae O1
-
Barker A., Clark C.A., Manning P.A. Identification of VCR, a repeated sequence associated with a locus encoding a hemagglutinin in Vibrio cholerae O1. J. Bacteriol. 176:1994;5450-5458.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 5450-5458
-
-
Barker, A.1
Clark, C.A.2
Manning, P.A.3
-
6
-
-
0026713759
-
Sequences of the envM gene and of two mutated alleles in Escherichia coli
-
Bergler H., Högenauer G., Turnowski F. Sequences of the envM gene and of two mutated alleles in Escherichia coli. J. Gen. Microbiol. 138:1992;2093-2100.
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 2093-2100
-
-
Bergler, H.1
Högenauer, G.2
Turnowski, F.3
-
7
-
-
0027441932
-
Specific interaction of IHF with RIBs, a class of bacterial repetitive DNA elements located at the 3' end of transcription units
-
Boccard F., Prentki P. Specific interaction of IHF with RIBs, a class of bacterial repetitive DNA elements located at the 3' end of transcription units. EMBO J. 12:1993;5019-5027.
-
(1993)
EMBO J.
, vol.12
, pp. 5019-5027
-
-
Boccard, F.1
Prentki, P.2
-
8
-
-
0031977363
-
The 102-kilobase unstable region of Yersinia pestis comprises a high-pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement
-
Buchrieser C., Prentice M., Carniel E. The 102-kilobase unstable region of Yersinia pestis comprises a high-pathogenicity island linked to a pigmentation segment which undergoes internal rearrangement. J. Bacteriol. 180:1998;2321-2329.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2321-2329
-
-
Buchrieser, C.1
Prentice, M.2
Carniel, E.3
-
9
-
-
0031154402
-
Sequence interruptions in enterobacterial repeated elements retain their ability to encode well-folded RNA secondary structures
-
Cromie G., Collins J., Leach D. Sequence interruptions in enterobacterial repeated elements retain their ability to encode well-folded RNA secondary structures. Mol. Microbiol. 24:1997;1311-1314.
-
(1997)
Mol. Microbiol.
, vol.24
, pp. 1311-1314
-
-
Cromie, G.1
Collins, J.2
Leach, D.3
-
10
-
-
0019193111
-
An eleven-base-pair sequence determines the specificity of DNA uptake in Haemophilus transformation
-
Danner D.B., Deich R.A., Sisco K.L., Smith H.O. An eleven-base-pair sequence determines the specificity of DNA uptake in Haemophilus transformation. Gene. 11:1980;311-318.
-
(1980)
Gene
, vol.11
, pp. 311-318
-
-
Danner, D.B.1
Deich, R.A.2
Sisco, K.L.3
Smith, H.O.4
-
11
-
-
0025773014
-
Species-specific uptake of DNA by gonococci is mediated by a 10-base-pair sequence
-
Elkins C., Thomas C.E., Seifert H.S., Sparling P.F. Species-specific uptake of DNA by gonococci is mediated by a 10-base-pair sequence. J. Bacteriol. 173:1991;3911-3913.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3911-3913
-
-
Elkins, C.1
Thomas, C.E.2
Seifert, H.S.3
Sparling, P.F.4
-
12
-
-
0029642089
-
In vivo interaction of the Escherichia coli integration host factor with its specific binding sites
-
Engelhorn M., Boccard F., Murtin C., Prentki P., Geiselmann J. In vivo interaction of the Escherichia coli integration host factor with its specific binding sites. Nucleic Acids Res. 23:1995;2959-2965.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2959-2965
-
-
Engelhorn, M.1
Boccard, F.2
Murtin, C.3
Prentki, P.4
Geiselmann, J.5
-
13
-
-
0030698083
-
In vivo cleavage of Escherichia coli BIME-2 repeat by DNA gyrase : Genetic characterization of the target and identification of the cut site
-
Espéli O., Boccard F. In vivo cleavage of Escherichia coli BIME-2 repeat by DNA gyrase : genetic characterization of the target and identification of the cut site. Mol. Microbiol. 26:1997;767-777.
-
(1997)
Mol. Microbiol.
, vol.26
, pp. 767-777
-
-
Espéli, O.1
Boccard, F.2
-
14
-
-
0025598366
-
Palindromic Units highly repetitive DNA sequences exhibit species specificity within enterobacteriaceae
-
Gilson E., Bachellier S., Perrin S., Perrin D., Grimont P.A.D., Grimont F., Hofnung M. Palindromic Units highly repetitive DNA sequences exhibit species specificity within enterobacteriaceae. Res. Microbiol. 141:1990;1103-1116.
-
(1990)
Res. Microbiol.
, vol.141
, pp. 1103-1116
-
-
Gilson, E.1
Bachellier, S.2
Perrin, S.3
Perrin, D.4
Grimont, P.A.D.5
Grimont, F.6
Hofnung, M.7
-
15
-
-
0021443498
-
A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli
-
Gilson E., Clément J.M., Brutlag D., Hofnung M. A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli. EMBO J. 3:1984;1417-1421.
-
(1984)
EMBO J.
, vol.3
, pp. 1417-1421
-
-
Gilson, E.1
Clément, J.M.2
Brutlag, D.3
Hofnung, M.4
-
16
-
-
0023043456
-
Palindromic Units from E. coli as binding sites for a chromoid-associated protein
-
Gilson E., Perrin D., Clément J.M., Szmelcman S., Dassa E., Hofnung M. Palindromic Units from E. coli as binding sites for a chromoid-associated protein. FEBS Lett. 206:1986;323-328.
-
(1986)
FEBS Lett.
, vol.206
, pp. 323-328
-
-
Gilson, E.1
Perrin, D.2
Clément, J.M.3
Szmelcman, S.4
Dassa, E.5
Hofnung, M.6
-
17
-
-
0025303243
-
DNA polymerase I and a protein complex bind specifically to E. coli Palindromic Units highly repetitive DNA: Implications for bacterial chromosome organization
-
Gilson E., Perrin D., Hofnung M. DNA polymerase I and a protein complex bind specifically to E. coli Palindromic Units highly repetitive DNA: implications for bacterial chromosome organization. Nucleic Acids Res. 18:1990;3941-3952.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3941-3952
-
-
Gilson, E.1
Perrin, D.2
Hofnung, M.3
-
20
-
-
0025861989
-
The BIME family of bacterial highly repetitive sequences
-
Gilson E., Saurin W., Perrin D., Bachellier S., Hofnung M. The BIME family of bacterial highly repetitive sequences. Res. Microbiol. 142:1991;217-222.
-
(1991)
Res. Microbiol.
, vol.142
, pp. 217-222
-
-
Gilson, E.1
Saurin, W.2
Perrin, D.3
Bachellier, S.4
Hofnung, M.5
-
21
-
-
0025728069
-
Palindromic Units are part of a new bacterial interspersed mosaic element (BIME)
-
Gilson E., Saurin W., Perrin D., Bachellier S., Hofnung M. Palindromic Units are part of a new bacterial interspersed mosaic element (BIME). Nucleic Acids Res. 19:1991;1375-1383.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 1375-1383
-
-
Gilson, E.1
Saurin, W.2
Perrin, D.3
Bachellier, S.4
Hofnung, M.5
-
22
-
-
0025032152
-
Sequence and uptake specificity of cloned sonicated fragments of Haemophilus influenzae DNA
-
Goodgal S.H., Mitchell M.A. Sequence and uptake specificity of cloned sonicated fragments of Haemophilus influenzae DNA. J. Bacteriol. 172:1990;5924-5928.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 5924-5928
-
-
Goodgal, S.H.1
Mitchell, M.A.2
-
23
-
-
0000858720
-
Identification and arrangement of the DNA sequence recognized in specific transformation of Neisseria gonorrhoeae
-
Goodman S.D., Scocca J.J. Identification and arrangement of the DNA sequence recognized in specific transformation of Neisseria gonorrhoeae. Proc. Natl. Acad. Sci. USA. 85:1988;6982-6986.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 6982-6986
-
-
Goodman, S.D.1
Scocca, J.J.2
-
24
-
-
0019947094
-
A novel intercistronic regulatory element of prokaryotic operons
-
Higgins C.F., Ferro-Luzzi Ames G., Barnes W.M., Clément J.-M., Hofnung M. A novel intercistronic regulatory element of prokaryotic operons. Nature. 298:1982;760-762.
-
(1982)
Nature
, vol.298
, pp. 760-762
-
-
Higgins, C.F.1
Ferro-Luzzi Ames, G.2
Barnes, W.M.3
Clément, J.-M.4
Hofnung, M.5
-
25
-
-
0025761156
-
ERIC sequences : A novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria
-
Hulton C.S.J., Higgins C.F., Sharp P.M. ERIC sequences : a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5:1991;825-834.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 825-834
-
-
Hulton, C.S.J.1
Higgins, C.F.2
Sharp, P.M.3
-
26
-
-
0030973448
-
The RIB element in the goaG-pspF intergenic region of Escherichia coli
-
Jovanovic G., Model P. The RIB element in the goaG-pspF intergenic region of Escherichia coli. J. Bacteriol. 179:1997;3095-3102.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3095-3102
-
-
Jovanovic, G.1
Model, P.2
-
27
-
-
0026199536
-
Identification of regulatory building blocks in Escherichia coli genome
-
Kunisawa T., Nakamura M. Identification of regulatory building blocks in Escherichia coli genome. Protein Seq. Data Anal. 4:1991;43-47.
-
(1991)
Protein Seq. Data Anal.
, vol.4
, pp. 43-47
-
-
Kunisawa, T.1
Nakamura, M.2
-
28
-
-
0026049278
-
An efficient algorithm for identifying matches with errors in multiple long molecular sequences
-
Leung M.Y., Blaisdell B.E., Burge C., Karlin S. An efficient algorithm for identifying matches with errors in multiple long molecular sequences. J. Mol. Biol. 221:1991;1367-1378.
-
(1991)
J. Mol. Biol.
, vol.221
, pp. 1367-1378
-
-
Leung, M.Y.1
Blaisdell, B.E.2
Burge, C.3
Karlin, S.4
-
29
-
-
0024362982
-
Unusual nucleotide arrangement with repeated sequences in the Escherichia coli K-12 chromosome
-
Nakata A., Amemura M., Makino K. Unusual nucleotide arrangement with repeated sequences in the Escherichia coli K-12 chromosome. J. Bacteriol. 171:1989;3553-3556.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 3553-3556
-
-
Nakata, A.1
Amemura, M.2
Makino, K.3
-
30
-
-
0030834799
-
Size and sequence polymorphism in the isocitrate dehydrogenase kinase/phosphatase gene (aceK) and flanking regions in Salmonella enterica and Escherichia coli
-
Nelson K., Wang F.S., Boyd E.F., Selander R.K. Size and sequence polymorphism in the isocitrate dehydrogenase kinase/phosphatase gene (aceK) and flanking regions in Salmonella enterica and Escherichia coli. Genetics. 147:1997;1509-1520.
-
(1997)
Genetics
, vol.147
, pp. 1509-1520
-
-
Nelson, K.1
Wang, F.S.2
Boyd, E.F.3
Selander, R.K.4
-
31
-
-
0023663908
-
Differential mRNA stability controls relative gene expression within a polycistronic operon
-
Newbury S.F., Smith N.H., Higgins C.F. Differential mRNA stability controls relative gene expression within a polycistronic operon. Cell. 51:1987;1131-1143.
-
(1987)
Cell
, vol.51
, pp. 1131-1143
-
-
Newbury, S.F.1
Smith, N.H.2
Higgins, C.F.3
-
32
-
-
0027426254
-
Integration host factor binds to a unique class of complex repetitive extragenic DNA sequences in Escherichia coli
-
Oppenheim A.B., Rudd K.E., Mendelson I., Teff D. Integration host factor binds to a unique class of complex repetitive extragenic DNA sequences in Escherichia coli. Mol. Microbiol. 10:1993;113-122.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 113-122
-
-
Oppenheim, A.B.1
Rudd, K.E.2
Mendelson, I.3
Teff, D.4
-
33
-
-
0030606602
-
A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12. 7-28. 0 min region on the linkage map
-
Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K., Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S., Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H., Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G., Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M., Horiuchi T. A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12. 7-28. 0 min region on the linkage map. DNA Res. 3:1996;137-155.
-
(1996)
DNA Res.
, vol.3
, pp. 137-155
-
-
Oshima, T.1
Aiba, H.2
Baba, T.3
Fujita, K.4
Hayashi, K.5
Honjo, A.6
Ikemoto, K.7
Inada, T.8
Itoh, T.9
Kajihara, M.10
Kanai, K.11
Kashimoto, K.12
Kimura, S.13
Kitagawa, M.14
Makino, K.15
Masuda, S.16
Miki, T.17
Mizobuchi, K.18
Mori, H.19
Motomura, K.20
Nakamura, Y.21
Nashimoto, H.22
Nishio, Y.23
Saito, N.24
Sampei, G.25
Seki, Y.26
Tagami, H.27
Takemoto, K.28
Wada, C.29
Yamamoto, Y.30
Yano, M.31
Horiuchi, T.32
more..
-
37
-
-
0030788272
-
Insertions within ERIC sequences
-
Sharp P.M. Insertions within ERIC sequences. Mol. Microbiol. 24:1997;1314-1315.
-
(1997)
Mol. Microbiol.
, vol.24
, pp. 1314-1315
-
-
Sharp, P.M.1
-
38
-
-
0024999660
-
A novel repeated DNA sequence located in the intergenic regions of bacterial chromosome
-
Sharples G.J., Lloyd R.G. A novel repeated DNA sequence located in the intergenic regions of bacterial chromosome. Nucleic Acids Res. 18:1990;6503-6508.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6503-6508
-
-
Sharples, G.J.1
Lloyd, R.G.2
-
39
-
-
0025020281
-
Tandem chromosomal duplications: Role of REP sequences in the recombination event at the join-point
-
Shyamala V., Schneider E., Ferro-Luzzi Ames G. Tandem chromosomal duplications: role of REP sequences in the recombination event at the join-point. EMBO J. 9:1990;939-946.
-
(1990)
EMBO J.
, vol.9
, pp. 939-946
-
-
Shyamala, V.1
Schneider, E.2
Ferro-Luzzi Ames, G.3
-
40
-
-
0021669070
-
Repetitive extragenic palindromic sequences: A major component of the bacterial genome
-
Stern M.J., Ferro-Luzzi Ames G., Smith N.H., Robinson E.C., Higgins C.J. Repetitive extragenic palindromic sequences: a major component of the bacterial genome. Cell. 37:1984;1015-1026.
-
(1984)
Cell
, vol.37
, pp. 1015-1026
-
-
Stern, M.J.1
Ferro-Luzzi Ames, G.2
Smith, N.H.3
Robinson, E.C.4
Higgins, C.J.5
-
41
-
-
0023760783
-
Role of the intercistronic region in post-transcriptional control of gene expression in the histidine transport operon of Salmonella typhimurium: Involvement of REP sequences
-
Stern M.J., Prossnitz E., Ferro-Luzzi Ames G. Role of the intercistronic region in post-transcriptional control of gene expression in the histidine transport operon of Salmonella typhimurium: involvement of REP sequences. Mol. Microbiol. 2:1988;141-152.
-
(1988)
Mol. Microbiol.
, vol.2
, pp. 141-152
-
-
Stern, M.J.1
Prossnitz, E.2
Ferro-Luzzi Ames, G.3
-
42
-
-
0021311537
-
Structure and function of the intercistronic regulatory deoC-deoA element of Escherichia coli K-12
-
Valentin-Hansen P., Hammer-Jespersen K., Boetius F., Svendsen I. Structure and function of the intercistronic regulatory deoC-deoA element of Escherichia coli K-12. EMBO J. 3:1984;179-183.
-
(1984)
EMBO J.
, vol.3
, pp. 179-183
-
-
Valentin-Hansen, P.1
Hammer-Jespersen, K.2
Boetius, F.3
Svendsen, I.4
-
43
-
-
0004754609
-
DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences
-
Yang Y., Ames G.F.L. DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences. Proc. Natl. Acad. Sci. USA. 85:1988;8850-8854.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 8850-8854
-
-
Yang, Y.1
Ames, G.F.L.2
-
44
-
-
0002023387
-
-
D.M. Riley. American Society for Microbiology, Washington DC
-
Yang Y., Ames G.F.L. Riley K.D.M. The bacterial chromosome. 1990;211-226 American Society for Microbiology, Washington DC.
-
(1990)
The Bacterial Chromosome
, pp. 211-226
-
-
Yang, Y.1
Ames, G.F.L.2
-
45
-
-
0026559399
-
The control of mRNA stability in Escherichia coli: Manipulation of the degradation pathway of the polycistronic atp mRNA
-
Ziemke P., McCarthy J.E.G. The control of mRNA stability in Escherichia coli: Manipulation of the degradation pathway of the polycistronic atp mRNA. Biochim. Biophys. Acta. 1130:1992;297-306.
-
(1992)
Biochim. Biophys. Acta
, vol.1130
, pp. 297-306
-
-
Ziemke, P.1
McCarthy, J.E.G.2
-
46
-
-
0019876473
-
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
-
Zuker M., Stiegler P. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 9:1981;133-148.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 133-148
-
-
Zuker, M.1
Stiegler, P.2
|