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Volumn 19, Issue 6, 1996, Pages 1177-1184

Regulatory noise in prokaryotic promoters: How bacteria learn to respond to novel environmental signals

Author keywords

[No Author keywords available]

Indexed keywords

BIODEGRADATION; DNA SEQUENCE; DNA STRUCTURE; GENE EXPRESSION REGULATION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PSEUDOMONAS; REVIEW; TRANSCRIPTION REGULATION;

EID: 0029881189     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.1996.tb02463.x     Document Type: Review
Times cited : (93)

References (37)
  • 1
    • 0024357889 scopus 로고
    • Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydro-carbons and expansion of the substrate range of the pathway
    • Abril, M.A., Michan, C., Timmis, K.N., and Ramos, J.L. (1989) Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydro-carbons and expansion of the substrate range of the pathway. J Bacteriol 171: 6782-6790.
    • (1989) J Bacteriol , vol.171 , pp. 6782-6790
    • Abril, M.A.1    Michan, C.2    Timmis, K.N.3    Ramos, J.L.4
  • 2
    • 0026049422 scopus 로고
    • Activation of the Pseudomonas TOL plasmid upper pathway operon: Identification of binding sites for the positive regulator XyIR and for integration host factor protein
    • Abril, M.A., Buck, M., and Ramos, J.L. (1991) Activation of the Pseudomonas TOL plasmid upper pathway operon: Identification of binding sites for the positive regulator XyIR and for integration host factor protein. J Biol Chem 266: 5832-5838.
    • (1991) J Biol Chem , vol.266 , pp. 5832-5838
    • Abril, M.A.1    Buck, M.2    Ramos, J.L.3
  • 3
    • 0028940587 scopus 로고
    • Gene number, noise reduction and biological complexity
    • Bird, A.P. (1995) Gene number, noise reduction and biological complexity. Trends Genet 11: 94-99.
    • (1995) Trends Genet , vol.11 , pp. 94-99
    • Bird, A.P.1
  • 4
    • 0026035006 scopus 로고
    • Biodegradation of halogenated aromatic compounds
    • Chaudrhy, G.R., and Chapalamadugu, S. (1991) Biodegradation of halogenated aromatic compounds. Microbiol Rev 55: 59-79.
    • (1991) Microbiol Rev , vol.55 , pp. 59-79
    • Chaudrhy, G.R.1    Chapalamadugu, S.2
  • 5
    • 0023777680 scopus 로고
    • Benzoate-dependent induction from the OP2 operator-promoter region of the TOL plasmid pWW0 in the absence of known plasmid regulatory genes
    • Cuskey, S. M., and Sprenkle, A.B. (1988) Benzoate-dependent induction from the OP2 operator-promoter region of the TOL plasmid pWW0 in the absence of known plasmid regulatory genes. J Bacteriol 170: 3742-3746.
    • (1988) J Bacteriol , vol.170 , pp. 3742-3746
    • Cuskey, S.M.1    Sprenkle, A.B.2
  • 6
    • 0027296741 scopus 로고
    • Mechanisms of transcriptional synergism between distinct virus-inducible enhancer elements
    • Du, W., Thanos, D., and Maniatis, T. (1993) Mechanisms of transcriptional synergism between distinct virus-inducible enhancer elements. Cell 74: 887-898.
    • (1993) Cell , vol.74 , pp. 887-898
    • Du, W.1    Thanos, D.2    Maniatis, T.3
  • 7
    • 0023712288 scopus 로고
    • Alkane utilization in Pseudomonas oleovorans. Structure and function of the regulatory locus alkR
    • Eggink, G., Engel, H., Meyer, W.G., Otten, J., Kingma, J., and Witholt, B. (1988) Alkane utilization in Pseudomonas oleovorans. Structure and function of the regulatory locus alkR. J Biol Chem 263: 13400-1405.
    • (1988) J Biol Chem , vol.263 , pp. 13400-21405
    • Eggink, G.1    Engel, H.2    Meyer, W.G.3    Otten, J.4    Kingma, J.5    Witholt, B.6
  • 8
    • 0028038233 scopus 로고
    • Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes
    • Fernández, S., Shingler, V., and de Lorenzo, V. (1994) Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggests that transcriptional control of biodegradative operons evolves independently of catabolic genes. J Bacteriol 176: 5052-5058.
    • (1994) J Bacteriol , vol.176 , pp. 5052-5058
    • Fernández, S.1    Shingler, V.2    De Lorenzo, V.3
  • 9
    • 0026643104 scopus 로고
    • The HMG domain of lymphoid enhancer factor 1 bends DNA and facilitates assembly of functional nucleoprotein structures
    • Giese, K., Cox, J., and Grosschedl, R. (1992) The HMG domain of lymphoid enhancer factor 1 bends DNA and facilitates assembly of functional nucleoprotein structures. Cell 69: 185-195.
    • (1992) Cell , vol.69 , pp. 185-195
    • Giese, K.1    Cox, J.2    Grosschedl, R.3
  • 10
    • 0000494359 scopus 로고
    • Catabolism or aromatic hydrocarbons by Pseudomonas
    • Hoopwood, D.A., and Chater, K.F. (eds). London: Academic Press
    • Harayama, S., and Timmis, K.T. (1989) Catabolism or aromatic hydrocarbons by Pseudomonas. In Genetics of Bacterial Diversity. Hoopwood, D.A., and Chater, K.F. (eds). London: Academic Press, pp. 151-174.
    • (1989) Genetics of Bacterial Diversity , pp. 151-174
    • Harayama, S.1    Timmis, K.T.2
  • 11
    • 0026805891 scopus 로고
    • Functional and evolutionary relationships between diverse oxygenases
    • Harayama, S., Kok, M., and Niedle, E.L. (1992) Functional and evolutionary relationships between diverse oxygenases. Annu Rev Microbiol 46: 565-601.
    • (1992) Annu Rev Microbiol , vol.46 , pp. 565-601
    • Harayama, S.1    Kok, M.2    Niedle, E.L.3
  • 12
    • 0011215998 scopus 로고
    • Enhancers and other cis-acting sequences
    • Hames, B.D., and Glover, D.M. (eds). Washington DC: IRL Press
    • Hatzopoulos, A.K., Schlokat, U., and Gruss, P. (1988) Enhancers and other cis-acting sequences. In Transcription and Splicing. Hames, B.D., and Glover, D.M. (eds). Washington DC: IRL Press, pp. 43-96.
    • (1988) Transcription and Splicing , pp. 43-96
    • Hatzopoulos, A.K.1    Schlokat, U.2    Gruss, P.3
  • 14
    • 0028068737 scopus 로고
    • Cross-talk between catabolic pathways is Pseudomonas putida: XylS-dependent and -independent activation of the TOL meta operon requires the same cis-acting sequences within the Pm promoter
    • Kessler, B., Marqués, S., Köhler, T., Ramos, J.L., Timmis, K.N., and de Lorenzo, V. (1994) Cross-talk between catabolic pathways is Pseudomonas putida: XylS-dependent and -independent activation of the TOL meta operon requires the same cis-acting sequences within the Pm promoter. J Bacteriol 176: 5578-5582.
    • (1994) J Bacteriol , vol.176 , pp. 5578-5582
    • Kessler, B.1    Marqués, S.2    Köhler, T.3    Ramos, J.L.4    Timmis, K.N.5    De Lorenzo, V.6
  • 16
    • 0027282545 scopus 로고
    • Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways
    • Marqués, S., and Ramos, J.L. (1993) Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways. Mol Microbiol 9: 923-929.
    • (1993) Mol Microbiol , vol.9 , pp. 923-929
    • Marqués, S.1    Ramos, J.L.2
  • 17
    • 0026480282 scopus 로고
    • Molecular mechanisms of genetic adaptation to xenobiotic compounds
    • van der Meer, J.R., de Vos, W.H., Harayama, S., and Zehnder, A. (1992) Molecular mechanisms of genetic adaptation to xenobiotic compounds. Microbiol Rev 56: 677-694.
    • (1992) Microbiol Rev , vol.56 , pp. 677-694
    • Van Der Meer, J.R.1    De Vos, W.H.2    Harayama, S.3    Zehnder, A.4
  • 18
    • 0027242020 scopus 로고
    • Functional complementarity between the HMG1-like yeast mitochondrial histone HM and the bacterial histone-like protein HU
    • Megraw, T.L., and Chae, C.B. (1993) Functional complementarity between the HMG1-like yeast mitochondrial histone HM and the bacterial histone-like protein HU. J Biol Chem 268: 12758-12763.
    • (1993) J Biol Chem , vol.268 , pp. 12758-12763
    • Megraw, T.L.1    Chae, C.B.2
  • 19
    • 0025940872 scopus 로고
    • Regulatory cross talk at composite response elements
    • Miner, J.N., and Yamamoto, K.R. (1991) Regulatory cross talk at composite response elements. Trends Biochem Sci 16: 423-426.
    • (1991) Trends Biochem Sci , vol.16 , pp. 423-426
    • Miner, J.N.1    Yamamoto, K.R.2
  • 20
    • 0025118536 scopus 로고
    • Transcriptional enhancers can act in trans
    • Muller, H.P., and Schaffner, W. (1990) Transcriptional enhancers can act in trans. Trends Genet 6: 300-304.
    • (1990) Trends Genet , vol.6 , pp. 300-304
    • Muller, H.P.1    Schaffner, W.2
  • 21
    • 0028565028 scopus 로고
    • Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: Functional and evolutionary implications
    • Parsek, M.R., McFall, S., Shinabarger, D., and Chakrabarty, A.M. (1994) Interaction of two LysR-type regulatory proteins CatR and ClcR with heterologous promoters: Functional and evolutionary implications. Proc Natl Acad Sci USA 91: 12393-12397.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 12393-12397
    • Parsek, M.R.1    McFall, S.2    Shinabarger, D.3    Chakrabarty, A.M.4
  • 22
    • 0028969228 scopus 로고
    • Differential DNA bending introduced by the Pseudomonas putida LysR-type regulator, CatR, at the plasmid-borne pheBA and chromosomal catBC promoters
    • Parsek, M.R., Kivisaar, M., and Chakrabarty, A.M. (1995) Differential DNA bending introduced by the Pseudomonas putida LysR-type regulator, CatR, at the plasmid-borne pheBA and chromosomal catBC promoters. Mol Microbiol 15: 919-828.
    • (1995) Mol Microbiol , vol.15 , pp. 919-1828
    • Parsek, M.R.1    Kivisaar, M.2    Chakrabarty, A.M.3
  • 23
    • 0027216519 scopus 로고
    • The non-specific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures
    • Paull, T.T., Haykinson, M.J., and Johnson, R.C. (1993) The non-specific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. Genes Dev 7: 1521-1534.
    • (1993) Genes Dev , vol.7 , pp. 1521-1534
    • Paull, T.T.1    Haykinson, M.J.2    Johnson, R.C.3
  • 24
    • 0028980296 scopus 로고
    • 54-dependent promoter Ps of the TOL plasmid of Pseudomonas putida requires HU for transcriptional activation in vivo by XylR
    • 54-dependent promoter Ps of the TOL plasmid of Pseudomonas putida requires HU for transcriptional activation in vivo by XylR. J Bacteriol 177: 3758-3763.
    • (1995) J Bacteriol , vol.177 , pp. 3758-3763
    • Pérez-Martín, J.1    De Lorenzo, V.2
  • 26
    • 0028100756 scopus 로고
    • 54-dependent promoter Pu of the upper-TOL operon by intrinsically curved sequences
    • 54-dependent promoter Pu of the upper-TOL operon by intrinsically curved sequences. J Biol Chem 269: 22657-22662.
    • (1994) J Biol Chem , vol.269 , pp. 22657-22662
    • Pérez-Martín, J.1    Timmis, K.N.2    De Lorenzo, V.3
  • 27
    • 0025158998 scopus 로고
    • Signal-regulator interactions. Genetic analysis of the effector binding site of XylS, the benzoate-activated positive regulator of Pseudomonas TOL plasmid metacleavage pathway operon
    • Ramos, J.L., Michán, C., Rojo, F., Dwyer, D., and Timmis, K.N. (1990) Signal-regulator interactions. Genetic analysis of the effector binding site of XylS, the benzoate-activated positive regulator of Pseudomonas TOL plasmid metacleavage pathway operon. J Mol Biol 211: 373-382.
    • (1990) J Mol Biol , vol.211 , pp. 373-382
    • Ramos, J.L.1    Michán, C.2    Rojo, F.3    Dwyer, D.4    Timmis, K.N.5
  • 28
    • 0024567178 scopus 로고
    • Evidence that the transcription activator encoded by the Pseudomonas putida nahR gene is evolutionary related to the transcription activators encoded by the Rhizobium nodD genes
    • Schell, M., and Sukordhaman, M. (1989) Evidence that the transcription activator encoded by the Pseudomonas putida nahR gene is evolutionary related to the transcription activators encoded by the Rhizobium nodD genes. J Bacteriol 171: 1952-1959.
    • (1989) J Bacteriol , vol.171 , pp. 1952-1959
    • Schell, M.1    Sukordhaman, M.2
  • 29
    • 0016186256 scopus 로고
    • The regulation of naphatalene oxygenase in Pseudomonas
    • Shamsuzzaman, K.M., and Barnsley, E.A. (1974) The regulation of naphatalene oxygenase in Pseudomonas. J Gen Microbiol 83: 165-170.
    • (1974) J Gen Microbiol , vol.83 , pp. 165-170
    • Shamsuzzaman, K.M.1    Barnsley, E.A.2
  • 30
    • 0028325759 scopus 로고
    • Sensing aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600
    • Shingler, V., and Moore, T. (1994) Sensing aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600. J Bacteriol 176: 1555-1560.
    • (1994) J Bacteriol , vol.176 , pp. 1555-1560
    • Shingler, V.1    Moore, T.2
  • 31
    • 0026567783 scopus 로고
    • Nucleotide sequence and functional analysis of the complete phenol/3,4 dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600
    • Shingler, V., Powlowski, J., and Marklund, U. (1992) Nucleotide sequence and functional analysis of the complete phenol/3,4 dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600. J Bacteriol 174: 711-724.
    • (1992) J Bacteriol , vol.174 , pp. 711-724
    • Shingler, V.1    Powlowski, J.2    Marklund, U.3
  • 32
    • 0027400541 scopus 로고
    • Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators
    • Shingler, V., Bartilson, M., and Moore, T. (1993) Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators. J Bacteriol 175: 1596-1604.
    • (1993) J Bacteriol , vol.175 , pp. 1596-1604
    • Shingler, V.1    Bartilson, M.2    Moore, T.3
  • 33
    • 0026489365 scopus 로고
    • The high mobility group protein HMGI(Y) is required for NF-κB-dependent virus induction of the human IFN-β gene
    • Thanos, D., and Maniatis, T. (1992) The high mobility group protein HMGI(Y) is required for NF-κB-dependent virus induction of the human IFN-β gene. Cell 71: 777-789.
    • (1992) Cell , vol.71 , pp. 777-789
    • Thanos, D.1    Maniatis, T.2
  • 34
    • 0028226799 scopus 로고
    • DNA chaperones: A solution to a persistence problem?
    • Travers, A.A., Ner, S.S., and Churchill, M. (1994) DNA chaperones: a solution to a persistence problem? Cell 77: 167-169.
    • (1994) Cell , vol.77 , pp. 167-169
    • Travers, A.A.1    Ner, S.S.2    Churchill, M.3
  • 36
    • 0019135007 scopus 로고
    • Origins of metabolic diversity: Sustitutions of homologous sequences into genes for enzymes with different catalytic activities
    • Yeh, W.K., and Ornston, L.N. (1980) Origins of metabolic diversity: Sustitutions of homologous sequences into genes for enzymes with different catalytic activities. Proc Natl Acad Sci USA 143: 5365-5369.
    • (1980) Proc Natl Acad Sci USA , vol.143 , pp. 5365-5369
    • Yeh, W.K.1    Ornston, L.N.2
  • 37
    • 0021803921 scopus 로고
    • Regulation of naphthalene catabolic plasmid NAH7
    • Yen, K.M., and Gunsalus, I.C. (1985) Regulation of naphthalene catabolic plasmid NAH7. J Bacteriol 162: 1008-1013.
    • (1985) J Bacteriol , vol.162 , pp. 1008-1013
    • Yen, K.M.1    Gunsalus, I.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.