Catabolism of phenylacetic acid in Escherichia coli: Characterization of a new aerobic hybrid pathway

Journal of Biological Chemistry

Volumn 273, Issue 40, 1998, Pages 25974-25986

  Ferrández, Abel ^a   Miñambres, Baltasar ^b   García, Belén ^b   Olivera, Elías R ^b   Luengo, José M ^b   García, José L ^a   Díaz, Eduardo ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

^b UNIVERSITY OF LEÓN   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

PHENYLACETIC ACID;

AEROBIC METABOLISM; ANIMAL CELL; ARTICLE; BACTERIAL METABOLISM; CATABOLISM; CITRIC ACID CYCLE; EPITHELIUM CELL; ESCHERICHIA COLI; FATTY ACID OXIDATION; GENE EXPRESSION REGULATION; HYDROXYLATION; MINERALIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ACETYL COENZYME A; BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; CLONING, MOLECULAR; COENZYME A LIGASES; ENZYME INDUCTION; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; HYDROXYLATION; LAC OPERON; MOLECULAR SEQUENCE DATA; PHENETHYLAMINES; PHENYLACETATES; PROMOTER REGIONS (GENETICS); PSEUDOMONAS PUTIDA; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION, GENETIC;

ANIMALIA; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; GYMNOMYZA SAMOENSIS; PAA; PROKARYOTA;

EID: 0032476062     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.273.40.25974     Document Type: Article

References (75)

1. Ferrández, A., García, J. L., and Díaz, E. (1997) J. Bacteriol. 179, 2573-2581
2. Burlingame, R., and Chapman, P. J. (1983) J. Bacteriol. 155, 113-121
3. Mohamed, M., and Fuchs, G. (1993) Arch. Microbiol. 159, 554-562
4. Savage, D. C. (1977) Annu. Rev. Microbiol. 31, 107-133
5. Cooper, R. A., and Skinner, M. A. (1980) J. Bacteriol. 143, 302-306
6. Burlingame, R. P., Wyman, L., and Chapman, P. J. (1986) J. Bacteriol. 168, 55-64
7. Cooper, R. A., Jones, D. C. N., and Parrott, S. (1985) J. Gen. Microbiol. 131, 2753-2757
8. Prieto, M. A., Díaz, E., and García, J. L. (1996) J. Bacteriol. 178, 111-120
9. Stringfellow, J. M., Turpin, B., and Cooper, R. A. (1995) Gene (Amst.) 166, 73-76
10. Spence, E. L., Kawamukai, M., Sanvoisin, J., Braven, H., and Bugg, T. D. H. (1996) J. Bacteriol. 178, 5249-5256
11. Díaz, E., Ferrández, A., and García, J. L. (1998) J. Bacteriol. 180, 2915-2923
12. Miñambres, B., Martínez-Blanco, H., Olivera, E. R., García, B., Díez, B., Barredo, J. L., Moreno, M. A., Schleissner, C., Salto, F., and Luengo, J. M. (1996) J. Biol. Chem. 271, 33531-33538
13. Vitovski, S. (1993) FEMS Microbiol. Lett. 108, 1-6
14. Olivera, E. R., Reglero, A., Martínez-Blanco, H., Fernández-Medarde, A., Moreno, M. A., and Luengo, J. M. (1994) Eur. J. Biochem. 221, 375-381
15. Olivera, E. R., Miñambres, B., García, B., Muñiz, C., Moreno, M. A., Ferrández, A., Díaz, E., García, J. L., and Luengo, J. M. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 6419-6424
16. Velasco, A., Alonso, S., García, J. L., Perera, J., and Díaz, E. (1998) J. Bacteriol. 180, 1063-1071
17. Davis, B. D., and Mingioli, E. S. (1950) J. Bacteriol. 60, 17-28
18. Ferrández, A., Prieto, M. A., García, J. L., and Díaz, E. (1997) FEBS Lett. 406, 23-27
19. Jaenecke, S., de Lorenzo, V., Timmis, K. N., and Díaz, E. (1996) Mol. Microbiol. 21, 293-300
20. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
21. McNeil, D. (1981) J. Bacteriol. 146, 260-268
22. de Lorenzo, V., and Timmis, K. N. (1994) Methods Enzymol. 235, 386-405
23. Miller, J. H. (1972) Experiments in Molecular Genetics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
24. Arrecubieta, C., López, R., and García, E. (1994) J. Bacteriol. 176, 6375-6383
25. Sanger, F., Nicklen, S., and Coulson, A. R. (1977) Proc. Natl. Acad. Sci. U. S. A. 74, 5463-5467
26. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410
27. Wilbur, W. J., and Lipman, D. J. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 726-730
28. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
29. Kröger, M., and Wahl, R. (1997) Nucleic Acids Res. 25, 39-42
30. Guyer, M. S. (1983) Methods Enzymol. 101, 362-369
31. Prieto, M. A., and García, J. L. (1997) Biochem. Biophys. Res. Commun. 232, 759-765
32. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254
33. Martínez-Blanco, H., Reglero, A., Rodríguez-Aparicio, L. B., and Luengo, J. M. (1990) J. Biol. Chem. 265, 7084-7090
34. Ahrazem, O., Prieto, A., Leal, J. A., Gómez-Miranda, B., Domenech, J., Jiménez-Barbero, J., and Bernabé, M. (1997) Carbohydr. Res. 303, 67-72
35. Prieto, M. A., Pérez-Aranda, A., and García, J. L. (1993) J. Bacteriol. 175, 2162-2167
36. Cheng, H.-R, and Lessie, T. G. (1994) J. Bacteriol. 176, 4034-4042
37. Yamashita, M., Azakami, H., Yokoro, N., Roh, J. H., Suzuki, H., Kumagai, H., and Murooka, Y. (1996) J. Bacteriol. 178, 2941-2947
38. Hanlon, S. P., Hill, T. K., Flavell, M. A., Stringfellow, J. M., and Cooper, R. A. (1997) Microbiology 143, 513-518
39. Gold, L.(1988)Annu. Rev. Biochem. 57, 199-233
40. Nakamura, Y., Gojobori, T., and Ikemura, T. (1997) Nucleic Acids Res. 25, 244-245
41. Blattner, F. R., Plunkett III, G., Bloch, C. A., Perna, N. T., Burland V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., Gregor, J., Davis, N. W., Kirkpatrick, H. A., Goeden, M. A., Rose, D. J., Mau, B., and Shao, Y. (1997) Science 277, 1453-1462
42. DeFrank, J. J., and Ribbons, D. W. (1977) J. Bacteriol. 129, 1356-1364
43. Sugino, H., Sasaki, M., Azakami, H., Yamashita, M., and Murooka, Y. (1992) J. Bacteriol. 174, 2485-2492
44. Henson, J. M., Kopp, B., and Kuempel, P. L. (1984) Mol. Gen. Genet. 193, 263-268
45. Chang, K.-H., Xiang, H., and Dunaway-Mariano, D. (1997) Biochemistry 36, 15650-15659
46. Egland, P. G., Pelletier, D. A., Dispensa, M., Gibson, J., and Harwood, C. S. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 6484-6489
47. Altenschmidt, U., and Fuchs, G. (1992) Ear. J. Biochem. 205, 721-727
48. Altenschmidt, U., Oswal, B., Steiner, E., Herrmann, H., and Fuchs, G. (1993) J. Bacteriol. 175, 4851-4858
49. Zenk, M. H., Ulbrich, B., Busse, J., and Stöckigt, J. (1980) Anal. Biochem. 101, 182-187
50. Gasson, M. J., Kitamura, Y., McLauchlan, W. R., Narbad, A., Parr, A. J., Parsons, E. L. H., Payne, J., Rhodes, M. J. C., and Walton, N. J. (1998) J. Biol. Chem. 273, 4163-4170
51. Koenig, K., and Andreesen, J. R. (1989) Appl. Environ. Microbiol. 55, 1829-1834
52. Grund, E., Denecke, B., and Eichenlaub, R. (1992) Appl. Environ. Microbiol. 58, 1874-1877
53. Cripps, R. E. (1973) Biochem. J. 134, 353-366
54. Dunaway-Mariano, D., and Babbitt, P. C. (1994) Biodegradation 5, 259-276
55. Niemetz, R., Altenschmidt, U., Brucker, S., and Fuchs, G. (1995) Eur. J. Biochem. 227, 161-168
56. Chohnan, S., Furukawa, H., Fujio, T., Nishihara, H., and Takamura, Y. (1997) Appl. Environ. Microbiol. 63, 553-560
57. Correl, C. C., Batie, C. J., Ballou, D. P., and Ludwig, M. L. (1992) Science 258, 1604-1610
58. Rosche, B., Tshisuaka, B., Hauer, B., Lingens, F., and Fetzner, S. (1997) J. Bacteriol. 179, 3549-3554
59. Small, F. J., and Ensign, S. A. (1997) J. Biol. Chem. 272, 24913-24920
60. Pikus, J. D., Studts, J. M., Achim, C., Kauffmann, K. E., Münck, E., Steffan, R. J., McClay, K., and Fox, B. G. (1996) Biochemistry 35, 9106-9119
61. Johnson, G. R., and Olsen, R. H. (1995) Appl. Environ. Microbiol. 61, 3336-3346
62. Powlowski, J., Sealy, J., Shingler, V., and Cadieux, E. (1997) J. Biol. Chem. 272, 945-951
63. Lipscomb, J. D. (1994) Annu. Rev. Microbiol. 48, 371-399
64. Qian, H., Edlund, U., Powlowski, J., Shingler, V., and Sethson, I. (1997) Biochemistry 36, 495-504
65. Nakatsu, C. H., Straus, N. A., and Wyndham, R. C. (1995) Microbiology 141, 485-495
66. Liu, Z.-J., Sun, Y.-J., Rose, J., Chung, Y.-J., Hsiao, C.-D., Chang, W.-R., Kuo, I., Perozich, J., Lindahl, R., Hempel, J., and Wang, B.-C. (1997) Nat. Struct. Biol. 4, 317-326
67. Langkau, B., and Ghisla, S. (1995) Eur. J. Biochem. 230, 686-697
68. Müller-Newen, G., Janssen, U., and Stoffel, W. (1995) Eur. J. Biochem. 228, 68-73
69. He, X.-Y-, Deng, H., and Yang, S.-Y. (1997) Biochemistry 36, 261-268
70. Harwood, C. S., and Parales, R. E. (1996) Annu. Rev. Microbiol. 50, 553-590
71. Fujita, Y., and Miwa, Y. (1989) J. Biol. Chem. 264, 4201-4206
72. DiRusso, C. C., Heimert, T. L., and Metzger, A. K. (1992) J. Biol. Chem. 267, 8685-8691
73. Black, P. N., and DiRusso, C. C. (1994) Biochim. Biophys. Acta 1210, 123-145
74. van der Meer, J. R., de Vos, W. M., Harayama, S., and Zehnder, A. J. B. (1992) Microbiol. Rev. 56, 677-694
75. Barnes, M. R., Duetz, W. A., and Williams, P. A. (1997) J. Bacteriol. 179, 6145-6153