sal genes determining the catabolism of salicylate esters are part of a supraoperonic cluster of catabolic genes in Acinetobacter sp. strain ADP1

Journal of Bacteriology

Volumn 182, Issue 7, 2000, Pages 2018-2025

  Jones, Rheinallt M ^a   Pagmantidis, Vassilis ^a   Williams, Peter A ^a  

^a BANGOR UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; BACTERIAL DNA; BACTERIAL PROTEIN; CATECHOL; ESTERASE; GENE PRODUCT; NAPHTHALENE; OXYGENASE; SALICYLIC ACID; SALICYLIC ACID ETHYL ESTER; UNCLASSIFIED DRUG;

ACINETOBACTER; ARTICLE; BACTERIAL GROWTH; CATABOLISM; CELL VIABILITY; CONTROLLED STUDY; DNA SEQUENCE; ENZYME ACTIVITY; ESCHERICHIA COLI; FATTY ACID TRANSPORT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PRIORITY JOURNAL; PSEUDOMONAS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ACINETOBACTER; BACTERIAL PROTEINS; CATECHOLS; CLONING, MOLECULAR; ESTERASES; ESTERS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; KINETICS; MIXED FUNCTION OXYGENASES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; MUTAGENESIS, INSERTIONAL; OPERON; PHENOTYPE; RECOMBINANT PROTEINS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, BACTERIAL; SALICYLATES; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

ACINETOBACTER; ACINETOBACTER SP.; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FELIS CATUS; NEGIBACTERIA; PROKARYOTA; PSEUDOMONAS;

EID: 0034019270     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.182.7.2018-2025.2000     Document Type: Article

References (34)

1. Alon, R. N., and D. L. Gutnick. 1993. Esterase from the oil-degrading Acinetobacter lwoffii RAG-1: sequence analysis and over-expression in Escherichia coli. FEMS Microbiol. Lett. 112:275-280.
2. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
3. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.). 1987. Current protocols in molecular biology. John Wiley & Sons, Inc., New York, N. Y.
4. Bauchop, T., and S. R. Elsden. 1960. The growth of microorganisms in relation to energy supply. J. Gen. Microhiol. 23:457-469.
5. Black, P. N. 1991. Primary sequence of the Escherichia coli fadL gene encoding an outer membrane protein required for long-chain fatty acid transport. J. Bacteriol. 173:435-442.
6. Bosch, R., E. Garcia Valdes, and E. R. B. Moore. 1999. Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10. Gene 236:149-157.
7. Collier, L. S., N. N. Nichols, and E. L. Neidle. 1997. benK encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1. J. Bacteriol. 179:5943-5946.
8. Collier, L. S., G. L. Gaines III, and E. L. Neidle. 1998. Regulation of benzoate degradation in Acinetobacter sp. strain ADP1 by BenM, a LysR-type transcriptional activator. J. Bacteriol. 180:2493-2501.
9. Doten, R. C., K.-L. Ngai, D. J. Mitchell, and L. N. Ornston. 1987. Cloning and genetic organization of the pca gene cluster from Acinetobacter calcoaceticus. J. Bacteriol. 169:3168-3174.
10. Elsemore, D. A., and L. N. Ornston. 1994. The pca-pob supraoperonic cluster of Acinetobacter calcoaceticus contains quiA, the structural gene for quinate-shikimate dehydrogenase. J. Bacteriol. 176:7659-7666.
11. Eraso, J. M., and S. Kaplan. 1994. prrA, a putative response regulator involved in oxygen regulation of photosynthetic gene expression in Rhodobacter sphaeroides. J. Bacteriol. 176:32-43.
12. Gerischer, U., and L. N. Ornston. 1995. Spontaneous mutations in pcaH and -G, structural genes for protocatechuate 3,4-dioxygenase in Acinetobacter calcoaceticus. J. Bacteriol. 177:1335-1347.
13. Gralton, E. M., A. L. Campbell, and E. L. Neidle. 1997. Directed introduction of DNA cleavage sites to produce a high-resolution genetic and physical map of the Acinetobacter sp. strain ADP1 (BD413UE) chromosome. Microbiology 143:1345-1357.
14. Habe, H., K. Kasuga, H. Nojiri, H. Yamane, and T. Omori. 1996. Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01. Appl. Environ. Microbiol. 62:4471-4477.
15. Harwood, C. S., and R. E. Parales. 1996. The β-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50:553-590.
16. Hofmann, K., P. Bucher, L. Falquet, and A. Bairoch. 1999. The PROSITE database, its status in 1999. Nucleic Acids Res. 27:215-219.
17. Jones, R. M., L. S. Collier, E. L. Neidle, and P. A. Williams. 1999. areABC genes determine the catabolism of aryl esters in Acinetobacter sp. strain ADP1. J. Bacteriol. 181:4568-4575.
18. Juni, E. 1972. Interspecies transformation of Adcinetobacter: genetic evidence for a ubiquitous genus. J. Bacteriol. 112:917-931.
19. Kok, R. G., V. M. Christoffels, B. Vosman, and K. J. Hellingwerf. 1993. Growth-phase dependent expression of the lipolytic system of Acinetobacter calcoaceticus BD413: cloning of a gene encoding one of the esterases. J. Gen. Microbiol. 139:2329-2342.
20. Neidle, E. L., M. K. Shapiro, and L. N. Ornston. 1987. Cloning and expression in Escherichia coli of Acinetobacter calcoaceticus genes for benzoate degradation. J. Bacteriol. 169:5496-5503.
21. Ollis, D. L., E. Cheah, M. Cygler, B. Dijkstra, F. Frolow, S. M. Franken, M. Harel, S. J. Remington, I. Silman, J. Schrag, J. L. Sussman, K. H. G. Verschueren, and A. Goldman. 1992. The α/β hydrolase fold. Protein Eng. 5:197-211.
22. Ornston, L. N., and E. L. Neidle. 1991. Evolution of genes for the β-keto-adipate pathway in Acinetobacter calcoaceticus, p. 201-237. In K. Towner, E. Bergogne-Berezin, and C. A. Fewson (ed.), The biology of Acinetobacter. Plenum Press, New York, N.Y.
23. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
24. Schell, M. A., and E. F. Poser. 1989. Demonstration, characterazation, and mutational analysis of NahR protein binding to nah and sal promoters. J. Bacteriol. 171:837-846.
25. Schell, M. A., and M. Sukordhaman. 1989. Evidence that the transcription activator encoded by the Pseudomonas putida nahR gene is evolutionary related to the transcription activators encoded by the Rhizobium nodD genes. J. Bacteriol. 171:1952-1959.
26. Schrag, J. D., and M. Cygler. 1997. Lipases and α/β hydrolase fold. Methods Enzymol. 284:85-107.
27. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weights, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
28. Vieira, J., and J. Messing. 1982. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19:259-268.
29. Wang, Y., M. Rawlings, D. T. Gibson, D. Labbe, H. Bergeron, R. Brousseau, and P. C. Lau. 1995. Identification of a membrane protein and a truncated LysR-type regulator associated with the toluene degradation pathway in Pseudomonas putida F1. Mol. Gen. Genet. 246:570-579.
30. Williams, P. A., and B. N. Zaba. 1997. EnzPack for Windows. Biosoft, Cambridge, United Kingdom.
31. Williams, P. A., and L. E. Shaw. 1997. mucK, a gene in Acinetobacter calcoaceticus ADP1 (BD413), encodes the ability to grow on exogenous cis,cis-muconate as the sole carbon source. J. Bacteriol. 179:5935-5942.
32. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
33. You, I.-S., D. Ghosal, and I. C. Gunsalus. 1988. Nucleotide sequence of plasmid NAH7 gene nahR and DNA binding of the nahR product. J. Bacteriol. 170:5409-5415.
34. You, I.-S., D. Ghosal, and I. C. Gunsalus. 1991. Nucleotide sequence analysis of the Pseudomonas putida PpG7 salicylate hydroxylase gene (nahG) and its 3′-flanking region. Biochemistry 30:1635-1641.