RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

Nature Biotechnology

Volumn 18, Issue 12, 2000, Pages 1262-1268

  Selinger, Douglas W ^a   Cheung, Kevin J ^b   Mei, Rui ^c   Johansson, Erik M ^c   Richmond, Craig S ^d   Blattner, Frederick R ^d   Lockhart, David J ^c,e   Church, George M ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b HARVARD COLLEGE   (United States)

^c Thermo Fisher Scientific   (United States)

^d UNIVERSITY OF WISCONSIN MADISON   (United States)

^e GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

Author keywords

DNA chips; Escherichia coli; Functional genomics; Gene expression; Microarrays; Oligonucleotide arrays; Stationary phase

Indexed keywords

ARTICLE; BASE PAIRING; ESCHERICHIA COLI; GENE CONTROL; GENE EXPRESSION; NONHUMAN; PRIORITY JOURNAL;

ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENOME, BACTERIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OPEN READING FRAMES; RNA, ANTISENSE; RNA, BACTERIAL; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI; NEGIBACTERIA; PROKARYOTA;

EID: 0033664358     PISSN: 10870156     EISSN: None     Source Type: Journal    
DOI: 10.1038/82367     Document Type: Article

References (43)

1. Bacterial transcript imaging by hybridization of total RNA to oligonucleotide arrays
2. Expression monitoring by hybridization to high-density oligonucleotide arrays
3. Genome-wide expression monitoring in Saccharomyces cerevisiae
4. Gene expression profile of aging and its retardation by caloric restriction
5. Cellular gene expression altered by human cytomegalovirus: Global monitoring with oligonucleotide arrays
6. Large-scale temporal gene expression mapping of central nervous system development
7. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
8. Systematic determination of genetic network architecture
9. Cluster analysis and display of genome-wide expression patterns
10. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
11. Genome-wide expression profiling in Escherichia coli K-12
12. Functional genomics: Expression analysis of Escherichia coli growing on minimal and rich media
13. Global regulation of gene expression in Escherichia coli
14. Light-generated oligonucleotide arrays for rapid DNA sequence analysis
15. The complete genome sequence of Escherichia coli K-12
16. Heat induction of sigma 32 synthesis mediated by mRNA secondary structure: A primary step of the heat shock response in Escherichia coli
17. The cellular concentration of the sigma S subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability
18. Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12
19. Systematic management and analysis of yeast gene expression data
20. The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli
21. Discovering antisense reagents by hybridization of RNA to oligonucleotide arrays
22. Structure and function of a bacterial mRNA stabilizer: Analysis of the 5' untranslated region of ompA mRNA
23. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
24. Determining the influence of structure on hybridization using oligonucleotide arrays
25. Messenger ribonucleic acid for the lipoprotein of the Escherichia coli outer membrane is polyadenylated
26. Poly(A) RNA in Escherichia coli: Nucleotide sequence at the junction of the Ipp transcript and the polyadenylate moiety
27. Expression of the rpsO and pnp genes: Structural analysis of a DNA fragment carrying their control regions
28. The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5' end
29. Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3' stabilizing stem and loop structure
30. Are sequencers ready to 'annotate' the human genome?
31. Use of a cDNA microarray to analyse gene expression patterns in human cancer
32. Exploring the metabolic and genetic control of gene expression on a genomic scale
33. Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli
34. A simplified formaldehyde fixation and immunoprecipitation technique for studying protein-DNA interactions
35. Mapping Polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatin
36. Quantifying DNA-protein interactions by double-stranded DNA arrays
37. Whole genome genetic-typing in yeast using high-density oligonucleotide arrays
38. Simultaneous genotyping and species-identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays