-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Mjers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Mjers, E.W.4
Lipman, D.J.5
-
2
-
-
0022443952
-
Comparative analysis of different Pseudomonas strains that degrade cinnamic acid
-
Andreoni, V., and G. Bestetti. 1986. Comparative analysis of different Pseudomonas strains that degrade cinnamic acid. Appl. Environ. Microbiol. 52:930-934.
-
(1986)
Appl. Environ. Microbiol.
, vol.52
, pp. 930-934
-
-
Andreoni, V.1
Bestetti, G.2
-
3
-
-
0028953835
-
The evolutionary relationships of biphenyl dioxygenase from Gram-positive Rhodococcus globerulus P6 to multicomponent dioxygenases from Gram-negative bacteria
-
Asturias, J. A., E. Díaz, and K. N. Timmis. 1995. The evolutionary relationships of biphenyl dioxygenase from Gram-positive Rhodococcus globerulus P6 to multicomponent dioxygenases from Gram-negative bacteria. Gene 156:11-18.
-
(1995)
Gene
, vol.156
, pp. 11-18
-
-
Asturias, J.A.1
Díaz, E.2
Timmis, K.N.3
-
4
-
-
0001246049
-
Derivations and genotypes of some mutant derivatives of Escherichia coli K-12
-
F. C. Neidhardt, J. L Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.), American Society for Microbiology, Washington, D.C.
-
Bachmann, B. J. 1987. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, p. 1190-1219. In F. C. Neidhardt, J. L Ingraham, K. B. Low, B. Magasanik, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella thyphimurium: cellular and molecular biology. American Society for Microbiology, Washington, D.C.
-
(1987)
Escherichia Coli and Salmonella Thyphimurium: Cellular and Molecular Biology
, pp. 1190-1219
-
-
Bachmann, B.J.1
-
5
-
-
0029916915
-
The PROSITE database, its status in 1995
-
Bairoch, A., P. Bucher, and K. Hofmann. 1995. The PROSITE database, its status in 1995. Nucleic Acids Res. 24:189-196.
-
(1995)
Nucleic Acids Res.
, vol.24
, pp. 189-196
-
-
Bairoch, A.1
Bucher, P.2
Hofmann, K.3
-
6
-
-
0030882765
-
A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: Cloning and characterization of the hpp operon
-
Barnes, M. R., W. A. Duetz, and P. A. Williams. 1997. A 3-(3-hydroxyphenyl)propionic acid catabolic pathway in Rhodococcus globerulus PWD1: cloning and characterization of the hpp operon. J. Bacteriol. 179:6145-6153.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6145-6153
-
-
Barnes, M.R.1
Duetz, W.A.2
Williams, P.A.3
-
7
-
-
0000283073
-
The microbial metabolism of cinnamic acid
-
Blakley, E. R., and F. J. Simpson. 1964. The microbial metabolism of cinnamic acid. Can. J. Microbiol. 10:175-185.
-
(1964)
Can. J. Microbiol.
, vol.10
, pp. 175-185
-
-
Blakley, E.R.1
Simpson, F.J.2
-
8
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F. R., G. Plunkett III, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
9
-
-
0027431230
-
Overproduction, purification and properties of 2,3-dihydroxyphenylpropionate 1,2-dioxygenase from Escherichia coli
-
Bugg, T. D. H. 1993. Overproduction, purification and properties of 2,3-dihydroxyphenylpropionate 1,2-dioxygenase from Escherichia coli. Biochim. Biophys. Acta 1202:258-264.
-
(1993)
Biochim. Biophys. Acta
, vol.1202
, pp. 258-264
-
-
Bugg, T.D.H.1
-
10
-
-
0020625023
-
Catabolism of phenylpropionic acid and its 3-hydroxy derivative by Escherichia coli
-
Burlingame, R., and P. J. Chapman. 1983. Catabolism of phenylpropionic acid and its 3-hydroxy derivative by Escherichia coli. J. Bacteriol. 155:113-121.
-
(1983)
J. Bacteriol.
, vol.155
, pp. 113-121
-
-
Burlingame, R.1
Chapman, P.J.2
-
11
-
-
0022483943
-
Isolation and characterization of Escherichia coli mutants defective for phenylpropionate degradation
-
Burlingame, R. P., L. Wyman, and P. J. Chapman. 1986. Isolation and characterization of Escherichia coli mutants defective for phenylpropionate degradation. J. Bacteriol. 168:55-64.
-
(1986)
J. Bacteriol.
, vol.168
, pp. 55-64
-
-
Burlingame, R.P.1
Wyman, L.2
Chapman, P.J.3
-
12
-
-
0031060718
-
Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases
-
Butler, C. S., and J. R. Mason. 1997. Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases. Adv. Microb. Physiol. 38:47-84.
-
(1997)
Adv. Microb. Physiol.
, vol.38
, pp. 47-84
-
-
Butler, C.S.1
Mason, J.R.2
-
13
-
-
0030902352
-
Molecular characterization of an inducible p-coumaric acid decarboxylase from Lactobacillus plantarum: Gene cloning, transcriptional analysis, overexpression in Escherichia coli, purification, and characterization
-
Cavin, J.-F., L. Barthelmebs, and C. Diviès. 1997. Molecular characterization of an inducible p-coumaric acid decarboxylase from Lactobacillus plantarum: gene cloning, transcriptional analysis, overexpression in Escherichia coli, purification, and characterization. Appl. Environ. Microbiol. 63:1939-1944.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 1939-1944
-
-
Cavin, J.-F.1
Barthelmebs, L.2
Diviès, C.3
-
14
-
-
0013823373
-
The metabolism of β-phenylpropionic acid by an Achromobacter
-
Dagley, S., P. J. Chapman, and D. T. Gibson. 1965. The metabolism of β-phenylpropionic acid by an Achromobacter. Biochem. J. 97:643-650.
-
(1965)
Biochem. J.
, vol.97
, pp. 643-650
-
-
Dagley, S.1
Chapman, P.J.2
Gibson, D.T.3
-
15
-
-
0029864057
-
p-Cumate catabolic pathway in Pseudomonas putida F1: Cloning and characterization of DNA carrying the cmt operon
-
Eaton, R. W. 1996. p-Cumate catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA carrying the cmt operon. J. Bacteriol. 178:1351-1362.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 1351-1362
-
-
Eaton, R.W.1
-
16
-
-
0030911409
-
p-Cymene catabolic pathway in Pseudomonas putida F1: Cloning and characterization of DNA encoding conversion of p-cymene to p-cumate
-
Eaton, R. W. 1997. p-Cymene catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA encoding conversion of p-cymene to p-cumate. J. Bacteriol. 179:3171-3180.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3171-3180
-
-
Eaton, R.W.1
-
17
-
-
0022520181
-
Characterization of a plasmid-specified pathway for catabolism of isopropylbenzene in Pseudomonas pituda RE204
-
Eaton, R. W., and K. N. Timmis. 1986. Characterization of a plasmid-specified pathway for catabolism of isopropylbenzene in Pseudomonas pituda RE204. J. Bacteriol. 168:123-131.
-
(1986)
J. Bacteriol.
, vol.168
, pp. 123-131
-
-
Eaton, R.W.1
Timmis, K.N.2
-
18
-
-
0025805084
-
+-dependent 15-hydroxyprostaglandin dehydrogenase yields a catalytically inactive enzyme
-
+-dependent 15-hydroxyprostaglandin dehydrogenase yields a catalytically inactive enzyme. Biochem. Biophys. Res. Commun. 176:840-845.
-
(1991)
Biochem. Biophys. Res. Commun.
, vol.176
, pp. 840-845
-
-
Ensor, C.M.1
Tai, H.H.2
-
19
-
-
0026766452
-
Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400
-
Erickson, B. D., and F. J. Mondello. 1992. Nucleotide sequencing and transcriptional mapping of the genes encoding biphenyl dioxygenase, a multicomponent polychlorinated-biphenyl-degrading enzyme in Pseudomonas strain LB400. J. Bacteriol. 174:2903-2912.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 2903-2912
-
-
Erickson, B.D.1
Mondello, F.J.2
-
20
-
-
0030948489
-
Genetic characterization and expression in heterologous hosts of the 3(3-hydroxyphenyl)propionate catabolic pathway of Escherichia coli K-12
-
Ferrández, A., J. L. Garcia, and E. Díaz. 1997. Genetic characterization and expression in heterologous hosts of the 3(3-hydroxyphenyl)propionate catabolic pathway of Escherichia coli K-12. J. Bacteriol. 179:2573-2581.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2573-2581
-
-
Ferrández, A.1
Garcia, J.L.2
Díaz, E.3
-
22
-
-
0028124512
-
Identification of the bphA and bphB genes of Pseudomonas sp. strain KKS102 involved in degradation of biphenyl and polychlorinated biphenyls
-
Fukuda, M., Y. Yasukouchi, Y. Kikuchi, Y. Nagata, K. Kimbara, H. Horiuchi, M. Takagi, and K. Yano. 1994. Identification of the bphA and bphB genes of Pseudomonas sp. strain KKS102 involved in degradation of biphenyl and polychlorinated biphenyls. Biochem. Biophys. Res. Commun. 202:850-856.
-
(1994)
Biochem. Biophys. Res. Commun.
, vol.202
, pp. 850-856
-
-
Fukuda, M.1
Yasukouchi, Y.2
Kikuchi, Y.3
Nagata, Y.4
Kimbara, K.5
Horiuchi, H.6
Takagi, M.7
Yano, K.8
-
23
-
-
0023886015
-
Posttranscriptional regulatory mechanisms in Escherichia coli
-
Gold, L. 1988. Posttranscriptional regulatory mechanisms in Escherichia coli. Annu. Rev. Biochem. 57:199-233.
-
(1988)
Annu. Rev. Biochem.
, vol.57
, pp. 199-233
-
-
Gold, L.1
-
24
-
-
0024340114
-
New method for generating deletions and gene replacements in Escherichia coli
-
Hamilton, C. M., M. Aldea, B. K. Washburn, P. Babitzke, and S. R. Kushner. 1989. New method for generating deletions and gene replacements in Escherichia coli. J. Bacteriol. 171:4617-4622.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 4617-4622
-
-
Hamilton, C.M.1
Aldea, M.2
Washburn, B.K.3
Babitzke, P.4
Kushner, S.R.5
-
25
-
-
0028172818
-
Identification of the pcaRKF gene cluster from Pseudomonas putida: Involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate
-
Harwood, C. S., N. N. Nichols, M.-K. Kim, J. L. Ditty, and R. E. Parales. 1994. Identification of the pcaRKF gene cluster from Pseudomonas putida: involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate. J. Bacteriol. 176:6479-6488.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 6479-6488
-
-
Harwood, C.S.1
Nichols, N.N.2
Kim, M.-K.3
Ditty, J.L.4
Parales, R.E.5
-
26
-
-
0029953163
-
Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: Potential mononuclear non-heme iron coordination sites
-
Jiang, H., R. E. Parales, N. A. Lynch, and D. T. Gibson. 1996. Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: potential mononuclear non-heme iron coordination sites. J. Bacteriol. 178:3133-3139.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3133-3139
-
-
Jiang, H.1
Parales, R.E.2
Lynch, N.A.3
Gibson, D.T.4
-
27
-
-
26444567779
-
-
Kikuchi, Y. GenBank accession no. D38633
-
Kikuchi, Y. GenBank accession no. D38633.
-
-
-
-
28
-
-
0028348664
-
Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102
-
Kikuchi, Y., Y. Nagata, M. Hinata, K. Kimbara, M. Fukuda, K. Yano, and M. Takagi. 1994. Identification of the bphA4 gene encoding ferredoxin reductase involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102. J. Bacteriol. 176:1689-1694.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1689-1694
-
-
Kikuchi, Y.1
Nagata, Y.2
Hinata, M.3
Kimbara, K.4
Fukuda, M.5
Yano, K.6
Takagi, M.7
-
29
-
-
0030998438
-
Functional analyses of a variety of chimeric dioxygenases constructed from two biphenyl dioxygenases that are similar structurally but different functionally
-
Kimura, N., A. Nishi, M. Goto, and K. Furukawa. 1997. Functional analyses of a variety of chimeric dioxygenases constructed from two biphenyl dioxygenases that are similar structurally but different functionally. J. Bacteriol. 179:3936-3943.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3936-3943
-
-
Kimura, N.1
Nishi, A.2
Goto, M.3
Furukawa, K.4
-
30
-
-
0042535907
-
Cultivation of Escherichia coli with mixtures of 3-phenylpropionic acid and glucose: Steady-state growth kinetics
-
Kovàrovà, K., A. Käch, A. J. B. Zehnder, and T. Egli. 1997. Cultivation of Escherichia coli with mixtures of 3-phenylpropionic acid and glucose: steady-state growth kinetics. Appl. Environ. Microbiol. 63:2619-2624.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2619-2624
-
-
Kovàrovà, K.1
Käch, A.2
Zehnder, A.J.B.3
Egli, T.4
-
31
-
-
0029991334
-
Compilation of DNA sequences of Escherichia coli K12 (ECD and ECDC; update 1995)
-
Kröger, M., and R. Wahl. 1996. Compilation of DNA sequences of Escherichia coli K12 (ECD and ECDC; update 1995). Nucleic Acids Res. 24:29-31.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 29-31
-
-
Kröger, M.1
Wahl, R.2
-
32
-
-
0030776495
-
Purification, characterization, and stereochemical analysis of a C-C hydrolase: 2-hydroxy-6-keto-nona-2,4-diene-1,9-dioic acid 5,6-hydrolase
-
Lam, W. W. Y., and T. D. H. Bugg. 1997. Purification, characterization, and stereochemical analysis of a C-C hydrolase: 2-hydroxy-6-keto-nona-2,4-diene-1,9-dioic acid 5,6-hydrolase. Biochemistry 36:12242-12251.
-
(1997)
Biochemistry
, vol.36
, pp. 12242-12251
-
-
Lam, W.W.Y.1
Bugg, T.D.H.2
-
33
-
-
0029852994
-
The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4)
-
Leveau, J. H. J., and J. R. van der Meer. 1996. The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4). J. Bacteriol. 178:6824-6832.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6824-6832
-
-
Leveau, J.H.J.1
Van Der Meer, J.R.2
-
34
-
-
0027507306
-
A major superfamily of transmembrane facilitators that catalyse uniport, symport and antiport
-
Marger, M. D., and M. H. Saier, Jr. 1993. A major superfamily of transmembrane facilitators that catalyse uniport, symport and antiport. Trends Biochem. Sci. 18:13-20.
-
(1993)
Trends Biochem. Sci.
, vol.18
, pp. 13-20
-
-
Marger, M.D.1
Saier Jr., M.H.2
-
35
-
-
0031039131
-
The bphDEF meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphACB genes in Rhodococcus sp. strain RHA 1
-
Masai, E., K. Sugiyama, N. Iwashita, S. Shimizu, J. E. Hauschild, T. Hatta, K. Kimbara, K. Yano, and M. Fukuda. 1997. The bphDEF meta-cleavage pathway genes involved in biphenyl/polychlorinated biphenyl degradation are located on a linear plasmid and separated from the initial bphACB genes in Rhodococcus sp. strain RHA 1. Gene 187:141-149.
-
(1997)
Gene
, vol.187
, pp. 141-149
-
-
Masai, E.1
Sugiyama, K.2
Iwashita, N.3
Shimizu, S.4
Hauschild, J.E.5
Hatta, T.6
Kimbara, K.7
Yano, K.8
Fukuda, M.9
-
36
-
-
0003785155
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
37
-
-
0030825584
-
Codon usage tabulated from the international DNA sequence databases
-
Nakamura, Y., T. Gojobori, and T. Ikemura. 1997. Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Res. 25:244-245.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 244-245
-
-
Nakamura, Y.1
Gojobori, T.2
Ikemura, T.3
-
38
-
-
0030865671
-
The cis-diol dehydrogenase cbaC gene of Tn5271 is required for growth on 3-chlorobenzoate but not 3,4-dichlorobenzoate
-
Nakatsu, C. H., M. Providenti, and R. C. Wyndham. 1997. The cis-diol dehydrogenase cbaC gene of Tn5271 is required for growth on 3-chlorobenzoate but not 3,4-dichlorobenzoate. Gene 196:209-218.
-
(1997)
Gene
, vol.196
, pp. 209-218
-
-
Nakatsu, C.H.1
Providenti, M.2
Wyndham, R.C.3
-
39
-
-
0030818839
-
PcaK, a high-affinity permease for the aromatic compounds 4-hydroxybenzoate and protocatechuate from Pseudomonas putida
-
Nichols, N. N., and C. S. Harwood. 1997. PcaK, a high-affinity permease for the aromatic compounds 4-hydroxybenzoate and protocatechuate from Pseudomonas putida. J. Bacteriol. 179:5056-5061.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5056-5061
-
-
Nichols, N.N.1
Harwood, C.S.2
-
40
-
-
0030041622
-
Characterization of PcaQ, a LysR-type transcriptional activator required for catabolism of phenolic compounds, from Agrobacterium tumefaciens
-
Parke, D. 1996. Characterization of PcaQ, a LysR-type transcriptional activator required for catabolism of phenolic compounds, from Agrobacterium tumefaciens. J. Bacteriol. 178:266-272.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 266-272
-
-
Parke, D.1
-
41
-
-
0040471713
-
VTR expression cassettes for engineering conditional phenotypes in Pseudomonas: Activity of the Pu promoter of the TOL plasmid under limiting concentrations of the XylR activator protein
-
Pérez-Martin, J., and V. de Lorenzo. 1996. VTR expression cassettes for engineering conditional phenotypes in Pseudomonas: activity of the Pu promoter of the TOL plasmid under limiting concentrations of the XylR activator protein. Gene 172:81-86.
-
(1996)
Gene
, vol.172
, pp. 81-86
-
-
Pérez-Martin, J.1
De Lorenzo, V.2
-
42
-
-
0029804961
-
Cloning, sequencing, and expression of isopropylbenzene degradation genes from Pseudomonas sp. strain JR1: Identification of isopropylbenzene dioxygenase that mediates trichloroethene oxidation
-
Pflugmacher, U., B. Averhoff, and G. Gottschalk. 1996. Cloning, sequencing, and expression of isopropylbenzene degradation genes from Pseudomonas sp. strain JR1: identification of isopropylbenzene dioxygenase that mediates trichloroethene oxidation. Appl. Environ. Microbiol. 62:3967-3977.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 3967-3977
-
-
Pflugmacher, U.1
Averhoff, B.2
Gottschalk, G.3
-
43
-
-
0030029182
-
Molecular characterization of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli W: Engineering a mobile aromatic degradative cluster
-
Prieto, M. A., E. Díaz, and J. L. García. 1996. Molecular characterization of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli W: engineering a mobile aromatic degradative cluster. J. Bacteriol. 178:111-120.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 111-120
-
-
Prieto, M.A.1
Díaz, E.2
García, J.L.3
-
44
-
-
0031559956
-
Identification of the 4-hydroxyphenylacetate transport gene of Escherichia coli W: Construction of a highly sensitive cellular biosensor
-
Prieto, M. A., and J. L. García. 1997. Identification of the 4-hydroxyphenylacetate transport gene of Escherichia coli W: construction of a highly sensitive cellular biosensor. FEBS Lett. 414:293-297.
-
(1997)
FEBS Lett.
, vol.414
, pp. 293-297
-
-
Prieto, M.A.1
García, J.L.2
-
45
-
-
0028865450
-
catM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticus
-
Romero-Arroyo, C. E., M. A. Schell, G. L. Gaines III, and E. L. Neidle. 1995. catM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticus. J. Bacteriol. 177:5891-5898.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 5891-5898
-
-
Romero-Arroyo, C.E.1
Schell, M.A.2
Gaines III, G.L.3
Neidle, E.L.4
-
46
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
48
-
-
0030744612
-
Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10
-
Sato, S.-I., J.-W. Nam, K. Kasuga, H. Nojiri, H. Yamane, and T. Omori. 1997. Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10. J. Bacteriol. 179:4850-4858.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4850-4858
-
-
Sato, S.-I.1
Nam, J.-W.2
Kasuga, K.3
Nojiri, H.4
Yamane, H.5
Omori, T.6
-
49
-
-
0027446708
-
Molecular biology of the LysR family of transcriptional regulators
-
Schell, M. A. 1993. Molecular biology of the LysR family of transcriptional regulators. Annu. Rev. Microbiol. 47:597-626.
-
(1993)
Annu. Rev. Microbiol.
, vol.47
, pp. 597-626
-
-
Schell, M.A.1
-
50
-
-
0029789393
-
Catechol dioxygenases from Escherichia coli (MhpB) and Alcaligenes eutrophus (MpcI): Sequence analysis and biochemical properties of a third family of extradiol dioxygenases
-
Spence, E. L., M. Kawamukai, J. Sanvoisin, H. Braven, and T. D. H. Bugg. 1996. Catechol dioxygenases from Escherichia coli (MhpB) and Alcaligenes eutrophus (MpcI): sequence analysis and biochemical properties of a third family of extradiol dioxygenases. J. Bacteriol. 178:5249-5256.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5249-5256
-
-
Spence, E.L.1
Kawamukai, M.2
Sanvoisin, J.3
Braven, H.4
Bugg, T.D.H.5
-
51
-
-
0015935415
-
The purification and properties of the flavoprotein melilotate hydroxylase
-
Strickland, S., and V. Massey. 1973. The purification and properties of the flavoprotein melilotate hydroxylase. J. Biol. Chem. 248:2944-2952.
-
(1973)
J. Biol. Chem.
, vol.248
, pp. 2944-2952
-
-
Strickland, S.1
Massey, V.2
-
52
-
-
0029779548
-
2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: Similarity to naphthalene dioxygenase
-
Suen, W.-C., B. E. Haigler, and J. C. Spain. 1996. 2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase. J. Bacteriol. 178:4926-4934.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4926-4934
-
-
Suen, W.-C.1
Haigler, B.E.2
Spain, J.C.3
-
53
-
-
0029785073
-
Characterization of active recombinant 2,3-dihydro-2,3-dihydroxybiphenyl dehydrogenase from Comamonas testosteroni B-356 and sequence of the encoding gene (bphB)
-
Sylvestre, M., Y. Hurtubise, D. Barriault, J. Bergeron, and D. Ahmad. 1996. Characterization of active recombinant 2,3-dihydro-2,3-dihydroxybiphenyl dehydrogenase from Comamonas testosteroni B-356 and sequence of the encoding gene (bphB). Appl. Environ. Microbiol. 62:2710-2715.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2710-2715
-
-
Sylvestre, M.1
Hurtubise, Y.2
Barriault, D.3
Bergeron, J.4
Ahmad, D.5
-
54
-
-
0029845403
-
Sequencing of Comamonas testosteroni strain B-356-biphenyl/chlorobiphenyl dioxygenase genes: Evolutionary relationships among Gram-negative bacterial biphenyl dioxygenases
-
Sylvestre, M., M. Sirois, Y. Hurtubise, J. Bergeron, D. Ahmad, F. Shareck, D. Barriault, I. Guillemette, and J. M. Juteau. 1996. Sequencing of Comamonas testosteroni strain B-356-biphenyl/chlorobiphenyl dioxygenase genes: evolutionary relationships among Gram-negative bacterial biphenyl dioxygenases. Gene 174:195-202.
-
(1996)
Gene
, vol.174
, pp. 195-202
-
-
Sylvestre, M.1
Sirois, M.2
Hurtubise, Y.3
Bergeron, J.4
Ahmad, D.5
Shareck, F.6
Barriault, D.7
Guillemette, I.8
Juteau, J.M.9
-
55
-
-
0026640186
-
Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707
-
Taira, K., J. Hirose, S. Hayashida, and K. Furukawa. 1992. Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707. J. Biol. Chem. 267:4844-4853.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 4844-4853
-
-
Taira, K.1
Hirose, J.2
Hayashida, S.3
Furukawa, K.4
-
56
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
57
-
-
0029920974
-
The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation
-
Werlen, C., H.-P. E. Kohler, and J. R. van der Meer. 1996. The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradation. J. Biol. Chem. 271:4009-4016.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 4009-4016
-
-
Werlen, C.1
Kohler, H.-P.E.2
Van Der Meer, J.R.3
-
58
-
-
0000006456
-
Metabolism of cinnamic acid and hydroxycinnamic acids by Lactobacillus pastorianus var. quinicus
-
Whiting, G. C., and J. G. Carr. 1959. Metabolism of cinnamic acid and hydroxycinnamic acids by Lactobacillus pastorianus var. quinicus. Nature (London) 184:1427-1428.
-
(1959)
Nature (London)
, vol.184
, pp. 1427-1428
-
-
Whiting, G.C.1
Carr, J.G.2
-
59
-
-
0020714456
-
Rapid similarity searches of nucleic acid and protein data banks
-
Wilbur, W. J., and D. J. Lipman. 1983. Rapid similarity searches of nucleic acid and protein data banks. Proc. Natl. Acad. Sci. USA 80:726-730.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 726-730
-
-
Wilbur, W.J.1
Lipman, D.J.2
-
60
-
-
0030930296
-
mucK, a gene in Acinetobacter calcoaceticus ADP1 (BD413), encodes the ability to grow on exogenous cis,cis-muconate as the sole carbon source
-
Williams, P. A., and L. E. Shaw. 1997. mucK, a gene in Acinetobacter calcoaceticus ADP1 (BD413), encodes the ability to grow on exogenous cis,cis-muconate as the sole carbon source. J. Bacteriol. 179:5935-5942.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5935-5942
-
-
Williams, P.A.1
Shaw, L.E.2
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