Genomic repeats, misassembly and reannotation: A case study with long-read resequencing of Porphyromonas gingivalis reference strains

BMC Genomics

Volumn 19, Issue 1, 2018, Pages

  Acuña Amador, Luis ^a,b   Primot, Aline ^a   Cadieu, Edouard ^a   Roulet, Alain ^c   Barloy Hubler, Frédérique ^a  

^a UNIVERSITÉ DE RENNES 1   (France)

^b UNIVERSIDAD DE COSTA RICA   (Costa Rica)

^c CEMAGREF   (France)

Author keywords

Annotation; Bacteroidetes; Biocuration; Comparative genomics; Genomic repeats; Long read sequencing; Misassembly; Porphyromonas gingivalis

Indexed keywords

CONTIG; BACTERIAL DNA;

ARTICLE; BACTERIAL GENETIC PHENOMENA AND FUNCTIONS; BACTERIAL GENOME; BACTEROIDES; GENE LOCUS; GENETIC VARIABILITY; GENOMIC REPEAT; INTEGRATIVE AND CONJUGATIVE ELEMENT; LONG READ SEQUENCING; NONHUMAN; OPERON; POLYMERASE CHAIN REACTION; PORPHYROMONAS GINGIVALIS; RRN OPERON; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; BACTEROIDETES; CHEMISTRY; GENETICS; GENOMICS; MOLECULAR GENETICS; NUCLEOTIDE REPEAT; STANDARD; STANDARDS; WHOLE GENOME SEQUENCING;

BACTEROIDETES; DNA, BACTERIAL; GENOME, BACTERIAL; GENOMICS; MOLECULAR SEQUENCE ANNOTATION; PORPHYROMONAS GINGIVALIS; REFERENCE STANDARDS; REPETITIVE SEQUENCES, NUCLEIC ACID; WHOLE GENOME SEQUENCING;

EID: 85040745810     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-017-4429-4     Document Type: Article

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