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Volumn 2, Issue MAY, 2011, Pages

Environmental and gut Bacteroidetes: The food connection

Author keywords

Adaptation to environmental niches; Bacteroidetes; Microbiota

Indexed keywords

ALGAE; ANIMALIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; LANGAT VIRUS;

EID: 80054093637     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2011.00093     Document Type: Article
Times cited : (995)

References (210)
  • 1
    • 12644293829 scopus 로고
    • Impact of the intestinal microflora on intestinal structure and function
    • ed. D. J. Hentges (New York, NY: Academic Press)
    • Abrams, G. D. (1983). "Impact of the intestinal microflora on intestinal structure and function," in Human Intestinal Microflora in Health and Disease, ed. D. J. Hentges (New York, NY: Academic Press), 292-310.
    • (1983) Human Intestinal Microflora in Health and Disease , pp. 292-310
    • Abrams, G.D.1
  • 2
    • 84988175843 scopus 로고
    • Production of hetero-trophic bacteria inhabiting macroscopic organic aggregates (marine snow) from surface waters
    • Alldredge, A. L., Cole, J. J., and Caron, D. A. (1986). Production of hetero-trophic bacteria inhabiting macroscopic organic aggregates (marine snow) from surface waters. Limnol Oceanogr. 31,68-78.
    • (1986) Limnol Oceanogr , vol.31 , pp. 68-78
    • Alldredge, A.L.1    Cole, J.J.2    Caron, D.A.3
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W., and Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59,143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 4
    • 0024319453 scopus 로고
    • Biochemical evidence that starch breakdown by Bacteroides thetaio-taomicron involves outer membrane starch-binding sites and periplasmic starch-degrading enzymes
    • Anderson,K.L.,and Salyers,A.A. (1989). Biochemical evidence that starch breakdown by Bacteroides thetaio-taomicron involves outer membrane starch-binding sites and periplasmic starch-degrading enzymes.J. Bacteriol 171,3192-3198.
    • (1989) J. Bacteriol. , vol.171 , pp. 3192-3198
    • Anderson, K.L.1    Salyers, A.A.2
  • 5
    • 0024336683 scopus 로고
    • Genetic evidence that outer membrane binding of starch is required for starch utilization by Bacteroides thetaiotaomicron
    • Anderson,K.L.,and Salyers,A.A. (1989). Genetic evidence that outer membrane binding of starch is required for starch utilization by Bacteroides thetaiotaomi-cron.J. Bacteriol. 171, 3199-3204.
    • (1989) J. Bacteriol. , vol.171 , pp. 3199-3204
    • Anderson, K.L.1    Salyers, A.A.2
  • 6
    • 50949131523 scopus 로고    scopus 로고
    • Comparative analysis of human gut microbiota by barcoded pyrosequencing
    • doi:10.1371/journal.pone.0002836
    • Andersson, A. E, Lindberg, M., Jakobsson, H., Backhed, R, Nyren, P., and Engstrand, L. (2008). Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 3, e2836. doi: 10.1371/journal. pone.0002836
    • (2008) PLoS ONE , vol.3
    • Andersson, A.E.1    Lindberg, M.2    Jakobsson, H.3    Backhed, R.4    Nyren, P.5    Engstrand, L.6
  • 8
    • 34548718221 scopus 로고    scopus 로고
    • Microbial structuring of marine ecosystems
    • Azam, E, and Malfatti, E (2007). Microbial structuring of marine ecosystems. Nat. Rev. Microbiol. 5,782-791.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 782-791
    • Azam, E.1    Malfatti, E.2
  • 10
    • 55849141940 scopus 로고    scopus 로고
    • DNA variation and symbiotic associations in phenotypically diverse sea urchin Strongylocentrotus intermedius
    • Balakirev, E. S., Pavlyuchkov, V. A., and Ayala, E J. (2008). DNA variation and symbiotic associations in phenotypically diverse sea urchin Strongylocentrotus intermedius. Proc. Natl. Acad. Sci. U.S.A. 105, 16218-16223.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 16218-16223
    • Balakirev, E.S.1    Pavlyuchkov, V.A.2    Ayala, E.J.3
  • 11
    • 0034980568 scopus 로고    scopus 로고
    • Zobellia galactanovorans gen. nov., sp. nov., a marine species of Flavobacteriaceae isolated from a red alga, and classification of
    • Barbeyron, T., L'haridon, S., Corre, E., Kloareg, B., and Potin, P. (2001). Zobellia galactanovorans gen. nov., sp. nov., a marine species of Flavobacteriaceae isolated from a red alga, and classification of. Int. J. Syst. Fvol. Microbiol. 51,985-997.
    • (2001) Int. J. Syst. Fvol. Microbiol. , vol.51 , pp. 985-997
    • Barbeyron, T.1    L'haridon, S.2    Corre, E.3    Kloareg, B.4    Potin, P.5
  • 12
    • 48749093516 scopus 로고    scopus 로고
    • Mariniflexile fucanivorans sp. nov., a marine member of the Flavobacteriaceae that degrades sulphated fucans from brown algae
    • Barbeyron, T., L'haridon, S., Michel, G., and Czjzek, M. (2008). Mariniflexile fucanivorans sp. nov., a marine member of the Flavobacteriaceae that degrades sulphated fucans from brown algae. Int. J. Syst. Fvol. Microbiol. 58,2107-2113.
    • (2008) Int. J. Syst. Fvol. Microbiol. , vol.58 , pp. 2107-2113
    • Barbeyron, T.1    L'haridon, S.2    Michel, G.3    Czjzek, M.4
  • 15
    • 33747198771 scopus 로고    scopus 로고
    • Bacterial communities of brown and red algae from Peter the Great Bay, the Sea of Japan
    • Beleneva,I.A.,and Zhukova,N.V.(2006). Bacterial communities of brown and red algae from Peter the Great Bay, the Sea of Japan. Mikrobiologiia 75, 410-419.
    • (2006) Mikrobiologiia , vol.75 , pp. 410-419
    • Beleneva, I.A.1    Zhukova, N.V.2
  • 16
    • 0023019467 scopus 로고
    • Comparison of the fecal microflora in rural Japanese and urban Canadians
    • Benno, Y., Suzuki, K., Narisawa, K., Bruce, W. R., and Mitsuoka, T. (1986). Comparison of the fecal microflora in rural Japanese and urban Canadians. Microbiol. Immunol. 30, 521-532.
    • (1986) Microbiol. Immunol. , vol.30 , pp. 521-532
    • Benno, Y.1    Suzuki, K.2    Narisawa, K.3    Bruce, W.R.4    Mitsuoka, T.5
  • 17
    • 0018970489 scopus 로고
    • Purification of glycoside hydrolases from Bacteroides fragilis
    • Berg, J. O., Lindqvist, L., and Nord, C. E. (1980). Purification of glycoside hydrolases from Bacteroides fragilis. Appl. Environ. Microbiol. 40,40-47.
    • (1980) Appl. Environ. Microbiol. , vol.40 , pp. 40-47
    • Berg, J.O.1    Lindqvist, L.2    Nord, C.E.3
  • 19
  • 20
    • 36549086376 scopus 로고    scopus 로고
    • An introduction to the family of Flavobacteriaceae
    • Bernardet, J.-F., and Nakagawa, Y. (2006). An introduction to the family of Flavobacteriaceae. Prokaryotes 7,455-480.
    • (2006) Prokaryotes , vol.7 , pp. 455-480
    • Bernardet, J.-F.1    Nakagawa, Y.2
  • 23
    • 77953233080 scopus 로고    scopus 로고
    • The role of anaerobic bacteria in bacteremia
    • Brook, I. (2010). The role of anaerobic bacteria in bacteremia. Anaerobe 16, 183-189.
    • (2010) Anaerobe , vol.16 , pp. 183-189
    • Brook, I.1
  • 24
    • 0038009298 scopus 로고    scopus 로고
    • Diversity and dynamics of microbial communities in soils from agro-ecosystems
    • Buckley, D. H., and Schmidt, T. M. (2003). Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environ. Microbiol. 5,441-452.
    • (2003) Environ. Microbiol. , vol.5 , pp. 441-452
    • Buckley, D.H.1    Schmidt, T.M.2
  • 26
    • 0027351945 scopus 로고
    • Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth
    • Carpita.N.C, and Gibeaut.D.M. (1993). Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth. Plant}. 3,1-30.
    • (1993) Plant , vol.3 , pp. 1-30
    • Carpita, N.C.1    Gibeaut, D.M.2
  • 27
    • 0012397767 scopus 로고
    • The magnitude of the microbial fermentation in the bovine rumen
    • Carroll, E. J., and Hungate, R. E. (1954). The magnitude of the microbial fermentation in the bovine rumen. Appl. Microbiol. 2,205-214.
    • (1954) Appl. Microbiol. , vol.2 , pp. 205-214
    • Carroll, E.J.1    Hungate, R.E.2
  • 29
    • 0032484910 scopus 로고    scopus 로고
    • Spontaneous assembly of marine dissolved organic matter into polymer gels
    • Chin, W. C, Orellana, M.V., and Verdugo, P. (1998). Spontaneous assembly of marine dissolved organic matter into polymer gels. Nature 391, 568-572.
    • (1998) Nature , vol.391 , pp. 568-572
    • Chin, W.C.1    Orellana, M.V.2    Verdugo, P.3
  • 30
    • 66249117185 scopus 로고    scopus 로고
    • Resource control of bacterial dynamics in the sea
    • 2nd Edn, ed. D. L. Kirchman (Hoboken, NJ: Wiley & Sons)
    • Church, M. J. (2008). Resource control of bacterial dynamics in the sea, in Microbial Ecology of the Oceans, 2nd Edn, ed. D. L. Kirchman (Hoboken, NJ: Wiley & Sons), 335-382.
    • (2008) Microbial Ecology of the Oceans , pp. 335-382
    • Church, M.J.1
  • 31
    • 0025945614 scopus 로고
    • An unusual symbiont from the gut of surgeonfishes may be the largest known prokaryote
    • Clements, K. D., and Bullivant, S. (1991). An unusual symbiont from the gut of surgeonfishes may be the largest known prokaryote.J. Bacterial 173, 5359-5362.
    • (1991) J. Bacterial , vol.173 , pp. 5359-5362
    • Clements, K.D.1    Bullivant, S.2
  • 32
    • 0034469143 scopus 로고    scopus 로고
    • Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization
    • Cottrell, M. T., and Kirchman, D. L. (2000). Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl. Environ. Microbiol. 66, 5116-5122.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 5116-5122
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 33
    • 0032976388 scopus 로고    scopus 로고
    • Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean
    • Crump, B. C, Armbrust, E. V., and Baross, J. A. (1999). Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean. Appl. Environ. Microbiol 65,3192-3204.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 3192-3204
    • Crump, B.C.1    Armbrust, E.V.2    Baross, J.A.3
  • 34
    • 54449092816 scopus 로고    scopus 로고
    • Attached bacterial populations shared by four species of aquatic angiosperms
    • Crump, B. C, and Koch, E. W. (2008). Attached bacterial populations shared by four species of aquatic angiosperms. Appl Environ. Microbiol 74,5948-5957.
    • (2008) Appl Environ. Microbiol , vol.74 , pp. 5948-5957
    • Crump, B.C.1    Koch, E.W.2
  • 35
    • 27944434246 scopus 로고    scopus 로고
    • Recent structural insights into the expanding world of carbohydrate-active enzymes
    • Davies, G. J., Gloster, T. M., and Henrissat, B. (2005). Recent structural insights into the expanding world of carbohydrate-active enzymes. Curr. Opin. Struct. Biol 15, 637-645.
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 637-645
    • Davies, G.J.1    Gloster, T.M.2    Henrissat, B.3
  • 36
    • 0000961484 scopus 로고
    • A new bacterial disease of fresh-water fishes
    • Washington DC
    • Davis, H. S. (1922). A new bacterial disease of fresh-water fishes," in Bulletin of the U.S. Bureau of Fisheries, Washington, DC, 261-280.
    • (1922) Bulletin of the U.S. Bureau of Fisheries , pp. 261-280
    • Davis, H.S.1
  • 38
    • 0030448607 scopus 로고    scopus 로고
    • Effect of regulatory protein levels on utilization of starch by Bacteroides thetaiotaomicron
    • D'Elia, J. N., and Salyers, A. A. (1996). Effect of regulatory protein levels on utilization of starch by Bacteroides thetaiotaomicron. J. Bacterial 178, 7180-7186.
    • (1996) J. Bacterial , vol.178 , pp. 7180-7186
    • D'Elia, J.N.1    Salyers, A.A.2
  • 40
    • 77951701764 scopus 로고    scopus 로고
    • The light-driven proton pump proteor-hodopsin enhances bacterial survival during tough times
    • doi: 10.1371/journal. pbio.1000359
    • DeLong, E. E, and Beja, O. (2010). The light-driven proton pump proteor-hodopsin enhances bacterial survival during tough times. PLoS Biol 8, el000359. doi: 10.1371/journal. pbio.1000359
    • (2010) PLoS Biol , vol.8
    • DeLong, E.E.1    Beja, O.2
  • 41
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
    • DeLong, E. E, Franks, D. G., and Alldredge, A. L. (1993). Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol Oceanogr. 38, 924-934.
    • (1993) Limnol Oceanogr , vol.38 , pp. 924-934
    • DeLong, E.E.1    Franks, D.G.2    Alldredge, A.L.3
  • 42
    • 0002537244 scopus 로고
    • Indigenous, normal, and autochthonous flora of the gastrointestinal tract
    • Dubos, R., Schaedler, R.W., Costello, R., and Hoet, P. (1965). Indigenous, normal, and autochthonous flora of the gastrointestinal tract. J. Exp. Med. 122, 67.
    • (1965) J. Exp. Med. , vol.122 , pp. 67
    • Dubos, R.1    Schaedler, R.W.2    Costello, R.3    Hoet, P.4
  • 44
    • 0028316679 scopus 로고
    • Virulence factors in anaerobes
    • Duerden, B. I. (1994). Virulence factors in anaerobes. Clin. Infect. Dis. 18, 253-259.
    • (1994) Clin. Infect. Dis. , vol.18 , pp. 253-259
    • Duerden, B.I.1
  • 46
    • 79952093303 scopus 로고    scopus 로고
    • Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by Gammaproteobacteria and Bacteroidetes
    • Edwards, J. L., Smith, D. L., Connolly, J., Mcdonald, J. E., Cox, M. J., Joint, I., Edwards, C, and McCarthy, A. J. (2010). Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by Gammaproteobacteria and Bacteroidetes. Genes 1, 371-384.
    • (2010) Genes , vol.1 , pp. 371-384
    • Edwards, J.L.1    Smith, D.L.2    Connolly, J.3    Mcdonald, J.E.4    Cox, M.J.5    Joint, I.6    Edwards, C.7    McCarthy, A.J.8
  • 47
    • 0035977793 scopus 로고    scopus 로고
    • Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing
    • Fandino, L. B., Riemann, L., Steward, G. E, Long, R. A., and Azam, E (2001). Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing. Aquat. Microb. Ecol 23,119-130.
    • (2001) Aquat. Microb. Ecol. , vol.23 , pp. 119-130
    • Fandino, L.B.1    Riemann, L.2    Steward, G.E.3    Long, R.A.4    Azam, E.5
  • 48
    • 0035644193 scopus 로고    scopus 로고
    • Dietary and developmental regulation of intestinal sugar transport
    • Ferraris, R.P. (2001). Dietary and developmental regulation of intestinal sugar transport. Biochem. J. 360,265-276.
    • (2001) Biochem. J. , vol.360 , pp. 265-276
    • Ferraris, R.P.1
  • 49
    • 0032949947 scopus 로고    scopus 로고
    • Glyceraldehyde-3-phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: evidence for intra- and inter-kingdom gene transfer
    • Figge, R. M., Schubert, M., Brinkmann, H., and Cerff, R. (1999). Glyceraldehyde-3-phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: evidence for intra- and inter-kingdom gene transfer. Mol Biol. Evol 16, 429-440.
    • (1999) Mol Biol. Evol. , vol.16 , pp. 429-440
    • Figge, R.M.1    Schubert, M.2    Brinkmann, H.3    Cerff, R.4
  • 51
    • 38349049462 scopus 로고    scopus 로고
    • Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
    • Flint, H. J., Bayer, E. A., Rincon, M. T., Lamed, R., and White, B. A. (2008). Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis. Nat. Rev. Microbiol. 6,121-131.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 121-131
    • Flint, H.J.1    Bayer, E.A.2    Rincon, M.T.3    Lamed, R.4    White, B.A.5
  • 52
    • 0036253488 scopus 로고    scopus 로고
    • Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces
    • Frias-Lopez, J., Zerkle, A. L., Bonheyo, G. T., and Fouke, B. W. (2002). Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces. Appl. Environ. Microbiol. 68, 2214-2228.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2214-2228
    • Frias-Lopez, J.1    Zerkle, A.L.2    Bonheyo, G.T.3    Fouke, B.W.4
  • 55
    • 67650789340 scopus 로고    scopus 로고
    • Identification of phytodetri-tus-degrading microbial communities in sublittoral Gulf of Mexico sands
    • Gihring, T. M., Humphrys, M., Mills, H. J., Huettel, M., and Kostka, J. E. (2009). Identification of phytodetri-tus-degrading microbial communities in sublittoral Gulf of Mexico sands. Limnol. Oceanogr. 54,1073-1083.
    • (2009) Limnol. Oceanogr. , vol.54 , pp. 1073-1083
    • Gihring, T.M.1    Humphrys, M.2    Mills, H.J.3    Huettel, M.4    Kostka, J.E.5
  • 56
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization
    • Glöckner, E O., Fuchs, B. M., and Amann, R. (1999). Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65,3721-3726.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3721-3726
    • Glöckner, E.O.1    Fuchs, B.M.2    Amann, R.3
  • 57
    • 0017652418 scopus 로고
    • Comparison of the fecal microflora of seventh-day adventists with individuals consuming a general diet. Implications concerning colonic carcinoma
    • Goldberg, M. J., Smith, J. W, and Nichols, R. L. (1977). Comparison of the fecal microflora of seventh-day adventists with individuals consuming a general diet. Implications concerning colonic carcinoma. Ann. Surg 186, 97-100.
    • (1977) Ann. Surg , vol.186 , pp. 97-100
    • Goldberg, M.J.1    Smith, J.W.2    Nichols, R.L.3
  • 59
    • 77950042744 scopus 로고    scopus 로고
    • Distinct flavo-bacterial communities in contrasting water masses of the north Atlantic Ocean
    • Gomez-Pereira, P. R., Fuchs, B. M., Alonso, C, Oliver, M. J., Van Beusekom, J. E., and Amann, R. (2010). Distinct flavo-bacterial communities in contrasting water masses of the north Atlantic Ocean. ISMEJ. 4,472-487.
    • (2010) ISME J , vol.4 , pp. 472-487
    • Gomez-Pereira, P.R.1    Fuchs, B.M.2    Alonso, C.3    Oliver, M.J.4    Van Beusekom, J.E.5    Amann, R.6
  • 61
    • 0036272385 scopus 로고    scopus 로고
    • Biological responses to seasonally varying fluxes of organic matter to the ocean floor: a review
    • Gooday, A. J. (2002). Biological responses to seasonally varying fluxes of organic matter to the ocean floor: a review. J. Oceanogr. 58, 305-332.
    • (2002) J. Oceanogr. , vol.58 , pp. 305-332
    • Gooday, A.J.1
  • 62
    • 0034712758 scopus 로고    scopus 로고
    • The origin of plants: body plan changes contributing to a major evolutionary radiation
    • Graham, L. E., Cook, M. E., and Busse, J. S. (2000).The origin of plants: body plan changes contributing to a major evolutionary radiation. Proc. Natl. Acad. Sci. U.S.A. 97,4535-4540.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 4535-4540
    • Graham, L.E.1    Cook, M.E.2    Busse, J.S.3
  • 63
    • 0023112219 scopus 로고
    • Selected characteristics of pathogenic and nonpathogenic strains of Bacteroides gingivalis
    • Greiner, D., and Mayrand, D. (1987). Selected characteristics of pathogenic and nonpathogenic strains of Bacteroides gingivalis. J. Clin. Microbiol. 25, 738-740.
    • (1987) J. Clin. Microbiol. , vol.25 , pp. 738-740
    • Greiner, D.1    Mayrand, D.2
  • 65
    • 77950847866 scopus 로고    scopus 로고
    • Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
    • Hehemann, J. H., Correc, G., Barbeyron, T, Helbert, W, Czjzek, M., and Michel, G. (2010). Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature 464,908-912.
    • (2010) Nature , vol.464 , pp. 908-912
    • Hehemann, J.H.1    Correc, G.2    Barbeyron, T.3    Helbert, W.4    Czjzek, M.5    Michel, G.6
  • 66
    • 0026055308 scopus 로고
    • A classification of glycosyl hydrolases based on amino acid sequence similarities
    • Henrissat, B. (1991). A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 280,309-316.
    • (1991) Biochem. J. , vol.280 , pp. 309-316
    • Henrissat, B.1
  • 69
    • 0036399823 scopus 로고    scopus 로고
    • How host-microbial interactions shape the nutrient environment of the mammalian intestine
    • Hooper, L. V, Midtvedt, T., and Gordon, J. I. (2002).How host-microbial interactions shape the nutrient environment of the mammalian intestine. Annu. Rev. Nutr. 22,283-307.
    • (2002) Annu. Rev. Nutr. , vol.22 , pp. 283-307
    • Hooper, L.V.1    Midtvedt, T.2    Gordon, J.I.3
  • 70
    • 72849147036 scopus 로고    scopus 로고
    • The genera Bergeyella and Weeksella
    • Hugo, C. J., Bruun, B., and Jooste, P. J. (2006). The genera Bergeyella and Weeksella. Prokaryotes 7, 532-538.
    • (2006) Prokaryotes , vol.7 , pp. 532-538
    • Hugo, C.J.1    Bruun, B.2    Jooste, P.J.3
  • 71
    • 72849147036 scopus 로고    scopus 로고
    • The genera Empedobacter and Myroides
    • Hugo, C. J., Bruun, B., and Jooste, P. J. (2006). The genera Empedobacter and Myroides. Prokaryotes 7,630-637.
    • (2006) Prokaryotes , vol.7 , pp. 630-637
    • Hugo, C.J.1    Bruun, B.2    Jooste, P.J.3
  • 72
    • 0033367021 scopus 로고    scopus 로고
    • A polyphasic taxonomic study of Chryseobacterium strains isolated from dairy sources
    • Hugo, C. J., Jooste, P. J., Segers, P., Vancanneyt, M., and Kersters, K. (1999). A polyphasic taxonomic study of Chryseobacterium strains isolated from dairy sources. Syst. Appl. Microbiol. 22, 586-595.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 586-595
    • Hugo, C.J.1    Jooste, P.J.2    Segers, P.3    Vancanneyt, M.4    Kersters, K.5
  • 73
    • 27844560086 scopus 로고    scopus 로고
    • Oral microbial communities in sickness and in health
    • Jenkinson, H. E, and Lamont, R. J. (2005). Oral microbial communities in sickness and in health. Trends Microbiol. 13,589-595.
    • (2005) Trends Microbiol , vol.13 , pp. 589-595
    • Jenkinson, H.E.1    Lamont, R.J.2
  • 74
    • 0032738867 scopus 로고    scopus 로고
    • The taxonomy, ecology and cultivation of bacterial genera belonging to the family Flavobacteriaceae
    • Jooste, P. J., and Hugo, C. J. (1999). The taxonomy, ecology and cultivation of bacterial genera belonging to the family Flavobacteriaceae. Int. J. Food Microbiol. 53, 81-94.
    • (1999) Int. J. Food Microbiol. , vol.53 , pp. 81-94
    • Jooste, P.J.1    Hugo, C.J.2
  • 75
    • 77952915969 scopus 로고    scopus 로고
    • Organic carbon degradation in anoxicorganic-rich shelf sediments: biogeo-chemical rates and microbial abundance
    • Juries, E. M., Fuchs, B. M., Arnosti, C, and Briichert, V. (2010). Organic carbon degradation in anoxicorganic-rich shelf sediments: biogeo-chemical rates and microbial abundance. Geomicrobiol J. 27, 303-314.
    • (2010) Geomicrobiol. J. , vol.27 , pp. 303-314
    • Juries, E.M.1    Fuchs, B.M.2    Arnosti, C.3    Briichert, V.4
  • 77
    • 33746256547 scopus 로고    scopus 로고
    • Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea
    • Kim, B. Y., Weon, H. Y., Cousin, S., Yoo, S. H., Kwon, S. W., Go, S. J., and Stackebrandt, E. (2006). Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea. Int. J. Syst. Evol. Microbiol. 56, 1645-1649.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 1645-1649
    • Kim, B.Y.1    Weon, H.Y.2    Cousin, S.3    Yoo, S.H.4    Kwon, S.W.5    Go, S.J.6    Stackebrandt, E.7
  • 78
    • 68949100596 scopus 로고    scopus 로고
    • Coastal phyto-plankton blooms in the Southern California Bight
    • Kim, H.-J., Miller, A. J., Mcgowan, J., and Carter, M. L. (2009). Coastal phyto-plankton blooms in the Southern California Bight. Prog. Oceanogr. 82, 137-147.
    • (2009) Prog. Oceanogr. , vol.82 , pp. 137-147
    • Kim, H.-J.1    Miller, A.J.2    Mcgowan, J.3    Carter, M.L.4
  • 79
    • 19544386504 scopus 로고    scopus 로고
    • Transfer of Chryseobacterium meningosep-ticum and Chryseobacterium miri-cola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov
    • Kim, K. K., Kim, M. K., Lim, J. H., Park, H. Y, and Lee, S. T. (2005). Transfer of Chryseobacterium meningosep-ticum and Chryseobacterium miri-cola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int. J. Syst. Evol. Microbiol. 55,1287-1293.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1287-1293
    • Kim, K.K.1    Kim, M.K.2    Lim, J.H.3    Park, H.Y.4    Lee, S.T.5
  • 80
    • 35848936502 scopus 로고    scopus 로고
    • Dietary modulation of colon cancer risk
    • Kim, Y.S., and Milner J.A. (2007).Dietary modulation of colon cancer risk. J. Nutr. 137,2576-2579.
    • (2007) J. Nutr. , vol.137 , pp. 2576-2579
    • Kim, Y.S.1    Milner, J.A.2
  • 81
    • 0001075528 scopus 로고
    • Studies on a group of previously unclassified bacteria associated with meningitis in infants
    • King, E. O. (1959). Studies on a group of previously unclassified bacteria associated with meningitis in infants. Am. J. Clin.Pathol. 31,241-247.
    • (1959) Am. J. Clin. Pathol. , vol.31 , pp. 241-247
    • King, E.O.1
  • 82
    • 0036207009 scopus 로고    scopus 로고
    • The ecology of Cytophaga-Flavobacteria in aquatic environments
    • Kirchman, D. L. (2002). The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol. Ecol. 39,91-100.
    • (2002) FEMS Microbiol. Ecol. , vol.39 , pp. 91-100
    • Kirchman, D.L.1
  • 83
    • 47249132837 scopus 로고    scopus 로고
    • New light on an important microbe in the ocean
    • Kirchman, D. L. (2008). New light on an important microbe in the ocean. Proc. Natl.Acad.Sci. U.S.A. 105,8487-8488.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 8487-8488
    • Kirchman, D.L.1
  • 84
    • 61349091754 scopus 로고    scopus 로고
    • Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron
    • Kitamura, M., Okuyama, M., Tanzawa, E, Mori, H., Kitago, Y., Watanabe, N., Kimura, A., Tanaka, I., and Yao, M. (2008). Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron. J. Biol. Chem. 283, 36328-36337.
    • (2008) J. Biol. Chem. , vol.283 , pp. 36328-36337
    • Kitamura, M.1    Okuyama, M.2    Tanzawa, E.3    Mori, H.4    Kitago, Y.5    Watanabe, N.6    Kimura, A.7    Tanaka, I.8    Yao, M.9
  • 85
    • 77958059286 scopus 로고    scopus 로고
    • Bacterial community composition of the gut microbiota of Cylindroiulus fulviceps (diplopoda) as revealed by molecular fingerprinting and cloning
    • Knapp, B. A., Seeber, J., Rief, A., Meyer, E., and Insam, H. (2010). Bacterial community composition of the gut microbiota of Cylindroiulus fulviceps (diplopoda) as revealed by molecular fingerprinting and cloning. Folia Microbiol. (Praha) 55,489-496.
    • (2010) Folia Microbiol. (Praha) , vol.55 , pp. 489-496
    • Knapp, B.A.1    Seeber, J.2    Rief, A.3    Meyer, E.4    Insam, H.5
  • 86
    • 46049115447 scopus 로고    scopus 로고
    • Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices
    • Koropatkin, N. M., Martens, E. C, Gordon, J. I., and Smith, T. J. (2008). Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices. Structure 16,1105-1115.
    • (2008) Structure , vol.16 , pp. 1105-1115
    • Koropatkin, N.M.1    Martens, E.C.2    Gordon, J.I.3    Smith, T.J.4
  • 87
    • 75849119359 scopus 로고    scopus 로고
    • SusG: a unique cell-membrane-associated alpha-amylase from a prominent human gut symbiont targets complex starch molecules
    • Koropatkin,N.M.,and Smith,T.J.(2010). SusG: a unique cell-membrane-associated alpha-amylase from a prominent human gut symbiont targets complex starch molecules. Structure 18,200-215.
    • (2010) Structure , vol.18 , pp. 200-215
    • Koropatkin, N.M.1    Smith, T.J.2
  • 90
    • 0028607322 scopus 로고
    • A calculation of all possible oligosaccharide isomers both branched and linear yields 1.05 × 10(12) structures for a reducing hexasaccharide: the isomer barrier to development of single-method sac-charide sequencing or synthesis systems
    • Laine, R. A. (1994). A calculation of all possible oligosaccharide isomers both branched and linear yields 1.05 × 10(12) structures for a reducing hexasaccharide: the isomer barrier to development of single-method sac-charide sequencing or synthesis systems. Glycobiology 4, 759-767.
    • (1994) Glycobiology , vol.4 , pp. 759-767
    • Laine, R.A.1
  • 92
    • 0028995929 scopus 로고
    • Occasional pathogenic bacteria promoting ice-ice disease in the carrageenan-producing red algae Kappaphycus alvarezii and Eucheuma denticulatum (Solieriaceae, Gigartinales, Rhodophyta)
    • Largo, D. B., Fukami, K., and Nishijima, T. (1995). Occasional pathogenic bacteria promoting ice-ice disease in the carrageenan-producing red algae Kappaphycus alvarezii and Eucheuma denticulatum (Solieriaceae, Gigartinales, Rhodophyta). J. Appl. Phycol. 7, 545-554.
    • (1995) J. Appl. Phycol. , vol.7 , pp. 545-554
    • Largo, D.B.1    Fukami, K.2    Nishijima, T.3
  • 93
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber, C. L., Hamady, M., Knight, R., andFierer, N. (2009). Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ. Microbiol. 75, 5111-5120.
    • (2009) Appl Environ. Microbiol. , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 94
    • 84886724798 scopus 로고    scopus 로고
    • The genus Capnocytophaga
    • Leadbetter, E. R. (2006). The genus Capnocytophaga. Prokaryotes 7, 709-711.
    • (2006) Prokaryotes , vol.7 , pp. 709-711
    • Leadbetter, E.R.1
  • 95
    • 78649284247 scopus 로고    scopus 로고
    • Dyadobacter soli sp. nov, a starch-degrading bacterium isolated from farm soil
    • Lee, M., Woo, S. G., Park, J., and Yoo, S. A. (2010). Dyadobacter soli sp. nov, a starch-degrading bacterium isolated from farm soil. Int. J. Syst. Evol. Microbiol. 60,2577-2582.
    • (2010) Int. J. Syst. Evol. Microbiol. , vol.60 , pp. 2577-2582
    • Lee, M.1    Woo, S.G.2    Park, J.3    Yoo, S.A.4
  • 96
    • 84875504341 scopus 로고    scopus 로고
    • Dominant bacterial communities in the rumen of Gayals (Bos frontalis) Yaks (Bos grun-niens) and Yunnan Yellow Cattle (Bos taurs) revealed by denaturing gradient gel electrophoresis
    • PMD: 21140219. [Epub ahead of print]
    • Leng, J., Xie, L, Zhu, R., Yang, S., Gou, X., Li, S., and Mao, H. (2010). Dominant bacterial communities in the rumen of Gayals (Bos frontalis), Yaks (Bos grun-niens) and Yunnan Yellow Cattle (Bos taurs) revealed by denaturing gradient gel electrophoresis. Mol. Biol. Rep. PMD: 21140219. [Epub ahead of print]
    • (2010) Mol. Biol. Rep.
    • Leng, J.1    Xie, L.2    Zhu, R.3    Yang, S.4    Gou, X.5    Li, S.6    Mao, H.7
  • 98
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley, R. E., Peterson, D. A., and Gordon, J. I. (2006). Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124, 837-848.
    • (2006) Cell , vol.124 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 99
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: human gut microbes associated with obesity
    • Ley, R. E., Turnbaugh, P. J., Klein, S., and Gordon, J. I. (2006). Microbial ecology: human gut microbes associated with obesity. Nature 444,1022-1023.
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 100
    • 0022974517 scopus 로고
    • Properties of Cytophaga johnsonae strains causing spoilage of fresh produce at food markets
    • Liao, C. H., and Wells, J. M. (1986). Properties of Cytophaga johnsonae strains causing spoilage of fresh produce at food markets. Appl. Environ. Microbiol. 52,1261-1265.
    • (1986) Appl. Environ. Microbiol. , vol.52 , pp. 1261-1265
    • Liao, C.H.1    Wells, J.M.2
  • 101
    • 0344765523 scopus 로고    scopus 로고
    • Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization
    • Llobet-Brossa, E., Rossello-Mora, R., and Amann, R. (1998). Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Appl. Environ. Microbiol. 64,2691-2696.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2691-2696
    • Llobet-Brossa, E.1    Rossello-Mora, R.2    Amann, R.3
  • 102
    • 0027310286 scopus 로고
    • Bacterial mediators in periodontal disease
    • Loesche, W.J. (1993). Bacterial mediators in periodontal disease. Clin. Infect. Dis. 16,203-210.
    • (1993) Clin. Infect. Dis. , vol.16 , pp. 203-210
    • Loesche, W.J.1
  • 103
    • 73649124197 scopus 로고    scopus 로고
    • Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica
    • doi: 10.1371/joumal.pgen.1000721
    • Lopez-Sanchez, M. J., Neef, A., Pereto, J., Patifio-Navarrete, R., Pignatelli, M., Latorre, A., and Moya, A. (2009). Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica. PLoS Genet. 5,el000721.doi: 10.1371/joumal.pgen.1000721
    • (2009) PLoS Genet , vol.5
    • Lopez-Sanchez, M.J.1    Neef, A.2    Pereto, J.3    Patifio-Navarrete, R.4    Pignatelli, M.5    Latorre, A.6    Moya, A.7
  • 105
    • 70149122146 scopus 로고    scopus 로고
    • Microbial diversity and host-specific sequences of Canada goose feces
    • Lu, J., Santo Domingo, J. W, Hill, S., and Edge, T. A. (2009). Microbial diversity and host-specific sequences of Canada goose feces. Appl. Environ. Microbiol. 75,5919-5926.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5919-5926
    • Lu, J.1    Santo Domingo, J.W.2    Hill, S.3    Edge, T.A.4
  • 106
    • 0036841355 scopus 로고    scopus 로고
    • Chromosome-encoded beta-lactamases TUS-1 and MUS-1 from Myroides odoratus and Myroides odo-ratimimus (formerly Flavobacterium odoratum), new members of the lineage of molecular subclass Bl metalloenzymes
    • Mammeri, H., Bellais, S., and Nordmann, P. (2002). Chromosome-encoded beta-lactamases TUS-1 and MUS-1 from Myroides odoratus and Myroides odo-ratimimus (formerly Flavobacterium odoratum), new members of the lineage of molecular subclass Bl metalloenzymes. Antimicrob. Agents Chemother. 46, 3561-3567.
    • (2002) Antimicrob. Agents Chemother. , vol.46 , pp. 3561-3567
    • Mammeri, H.1    Bellais, S.2    Nordmann, P.3
  • 107
    • 0034756326 scopus 로고    scopus 로고
    • Spanish household demand for seafood
    • Manrique, J., and Jensen, H. H. (2001). Spanish household demand for seafood. J. Agric Econ. 52,23-37.
    • (2001) J. Agric Econ. , vol.52 , pp. 23-37
    • Manrique, J.1    Jensen, H.H.2
  • 108
    • 77954304079 scopus 로고    scopus 로고
    • Prokaryotic and eukaryotic diversity of the human gut
    • Marchesi, J. R. (2010). Prokaryotic and eukaryotic diversity of the human gut. Adv. Appl. Microbiol. 72,43-62.
    • (2010) Adv. Appl. Microbiol. , vol.72 , pp. 43-62
    • Marchesi, J.R.1
  • 109
    • 55249108031 scopus 로고    scopus 로고
    • Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont
    • Martens, E. C, Chiang, H. C, and Gordon, J. I. (2008). Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe 4, 447-457.
    • (2008) Cell Host Microbe , vol.4 , pp. 447-457
    • Martens, E.C.1    Chiang, H.C.2    Gordon, J.I.3
  • 110
    • 69949094849 scopus 로고    scopus 로고
    • Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm
    • Martens, E. C, Koropatkin, N. M., Smith, T. J., and Gordon, J. I. (2009). Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. J. Biol. Chem. 284, 24673-24677.
    • (2009) J. Biol. Chem. , vol.284 , pp. 24673-24677
    • Martens, E.C.1    Koropatkin, N.M.2    Smith, T.J.3    Gordon, J.I.4
  • 111
    • 78649734540 scopus 로고    scopus 로고
    • Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects
    • doi: 10.1371/joumal. pone.0015046
    • Martinez, I., Kim, J., Duffy, P. R., Schlegel, V L., and Walter, J. (2010). Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects. PLoS ONE 5, el5046. doi: 10.1371/joumal. pone.0015046
    • (2010) PLoS ONE , vol.5
    • Martinez, I.1    Kim, J.2    Duffy, P.R.3    Schlegel, V.L.4    Walter, J.5
  • 112
    • 79251570230 scopus 로고    scopus 로고
    • Diversity of the bacterial community in the surface soil of a pear orchard based on 16SrRNA gene analysis
    • Martinez-Alonso, M., Escolano, J., Montesinos, E., and Gaju, N. (2010). Diversity of the bacterial community in the surface soil of a pear orchard based on 16SrRNA gene analysis. Int. Microbiol. 13,123-134.
    • (2010) Int. Microbiol. , vol.13 , pp. 123-134
    • Martinez-Alonso, M.1    Escolano, J.2    Montesinos, E.3    Gaju, N.4
  • 113
    • 77951765425 scopus 로고    scopus 로고
    • Microbial diversity in ostrich ceca as revealed by 16S ribosomal RNA gene clone library and detection of novel Fibrobacter species
    • Matsui, H., Kato, Y., Chikaraishi, T., Moritani, M., Ban-Tokuda, T., and Wakita, M. (2010). Microbial diversity in ostrich ceca as revealed by 16S ribosomal RNA gene clone library and detection of novel Fibrobacter species. Anaerobe 16, 83-93.
    • (2010) Anaerobe , vol.16 , pp. 83-93
    • Matsui, H.1    Kato, Y.2    Chikaraishi, T.3    Moritani, M.4    Ban-Tokuda, T.5    Wakita, M.6
  • 115
    • 45549091087 scopus 로고    scopus 로고
    • Capsular polysaccharides of symbiotic bacteria modulate immune responses during experimental colitis
    • Mazmanian, S. K. (2008). Capsular polysaccharides of symbiotic bacteria modulate immune responses during experimental colitis. J. Pediatr. Gastroenterol. Nutr. 46(Suppl. 1), E11-E12.
    • (2008) J. Pediatr. Gastroenterol. Nutr. , vol.46 , Issue.SUPPL. 1
    • Mazmanian, S.K.1
  • 116
    • 44449106055 scopus 로고    scopus 로고
    • A microbial symbiosis factor prevents intestinal inflammatory disease
    • Mazmanian, S. K., Round, J. L., and Kasper, D. L. (2008). A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453, 620-625.
    • (2008) Nature , vol.453 , pp. 620-625
    • Mazmanian, S.K.1    Round, J.L.2    Kasper, D.L.3
  • 118
    • 77958507828 scopus 로고    scopus 로고
    • Functional convergence in reduced genomes of bacterial symbi-onts spanning 200 my of evolution
    • McCutcheon, J. P., and Moran, N. A. (2010). Functional convergence in reduced genomes of bacterial symbi-onts spanning 200 my of evolution. Genome Biol. Evol. 2, 708-718.
    • (2010) Genome Biol. Evol. , vol.2 , pp. 708-718
    • McCutcheon, J.P.1    Moran, N.A.2
  • 119
    • 77956272755 scopus 로고    scopus 로고
    • The cell wall polysaccharide metabolism of the brown alga Ectocarpus silicu-losus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes
    • Michel, G., Tonon, T., Scornet, D., Cock, J. M., and Kloareg, B. (2010). The cell wall polysaccharide metabolism of the brown alga Ectocarpus silicu-losus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes. New Phytol. 188,82-97.
    • (2010) New Phytol , vol.188 , pp. 82-97
    • Michel, G.1    Tonon, T.2    Scornet, D.3    Cock, J.M.4    Kloareg, B.5
  • 120
    • 77956297774 scopus 로고    scopus 로고
    • Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in Eukaryotes
    • Michel, G., Tonon, T., Scornet, D., Cock, J. M., and Kloareg, B. (2010). Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in Eukaryotes. New Phytol. 188,67-81.
    • (2010) New Phytol , vol.188 , pp. 67-81
    • Michel, G.1    Tonon, T.2    Scornet, D.3    Cock, J.M.4    Kloareg, B.5
  • 121
    • 78751595975 scopus 로고    scopus 로고
    • Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing
    • doi: 10.1371/joumal.pone.0009768
    • Middelbos, I. S., Vester Boler, B. M., Qu, A., White, B. A., Swanson, K. S., and Fahey, G. C. Jr. (2010). Phylogenetic characterization of fecal microbial communities of dogs fed diets with or without supplemental dietary fiber using 454 pyrosequencing. PLoS ONE 5, e9768. doi: 10.1371/journal.pone.0009768
    • (2010) PLoS ONE , vol.5
    • Middelbos, I.S.1    Vester Boler, B.M.2    Qu, A.3    White, B.A.4    Swanson, K.S.5    Fahey Jr., G.C.6
  • 123
    • 0016338322 scopus 로고
    • Special problems associated with the isolation and identification of intestinal bacteria in fecal flora studies
    • Moore,WE.,and Holdeman,L.V. (1974). Special problems associated with the isolation and identification of intestinal bacteria in fecal flora studies. Am. J. Clin. Nutr. 27,1450-1455.
    • (1974) Am. J. Clin. Nutr. , vol.27 , pp. 1450-1455
    • Moore, W.E.1    Holdeman, L.V.2
  • 124
    • 84891301536 scopus 로고    scopus 로고
    • Organic matter-bacteria interactions in seawater
    • 2nd Edn, ed. D. L. Kirchman (Hoboken, NJ: Wiley & Sons)
    • Nagata, T. (2008). Organic matter-bacteria interactions in seawater, in Microbial Ecology in the Oceans, 2nd Edn, ed. D. L. Kirchman (Hoboken, NJ: Wiley & Sons), 207-242.
    • (2008) Microbial Ecology in the Oceans , pp. 207-242
    • Nagata, T.1
  • 125
    • 56149117939 scopus 로고    scopus 로고
    • Determination of the genome sequence of Porphyromonas gin-givalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis
    • Naito, M., Hirakawa, H., Yamashita, A., Ohara, N., Shoji, M., Yukitake, H., Nakayama, K., Toh, H., Yoshimura, F., Kuhara, S., Hattori, M., Hayashi, T., and Nakayama, K. (2008). Determination of the genome sequence of Porphyromonas gin-givalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis. DNA Res. 15,215-225.
    • (2008) DNA Res , vol.15 , pp. 215-225
    • Naito, M.1    Hirakawa, H.2    Yamashita, A.3    Ohara, N.4    Shoji, M.5    Yukitake, H.6    Nakayama, K.7    Toh, H.8    Yoshimura, F.9    Kuhara, S.10    Hattori, M.11    Hayashi, T.12    Nakayama, K.13
  • 126
    • 63849171250 scopus 로고    scopus 로고
    • Global diversity in the human salivary micro-biome
    • Nasidze, I., Li, J., Quinque, D., Tang, K., and Stoneking, M. (2009). Global diversity in the human salivary micro-biome. Genome Res. 19, 636-643.
    • (2009) Genome Res , vol.19 , pp. 636-643
    • Nasidze, I.1    Li, J.2    Quinque, D.3    Tang, K.4    Stoneking, M.5
  • 127
    • 67349244102 scopus 로고    scopus 로고
    • Comparative analysis of human saliva microbiome diversity by bar-coded pyrosequencing and cloning approaches
    • Nasidze, I., Quinque, D., Li, J., Li, M., Tang, K., and Stoneking, M. (2009). Comparative analysis of human saliva microbiome diversity by bar-coded pyrosequencing and cloning approaches. Anal. Biochem. 391, 64-68.
    • (2009) Anal. Biochem. , vol.391 , pp. 64-68
    • Nasidze, I.1    Quinque, D.2    Li, J.3    Li, M.4    Tang, K.5    Stoneking, M.6
  • 130
    • 22444447926 scopus 로고    scopus 로고
    • The cell walls that bind the tree of life
    • Niklas, K. J. (2004). The cell walls that bind the tree of life. Bioscience 54,831-841.
    • (2004) Bioscience , vol.54 , pp. 831-841
    • Niklas, K.J.1
  • 134
    • 77956520973 scopus 로고    scopus 로고
    • Complete genome sequence of Croceibacteratlanticus H7CC2559(T)
    • Oh, H. M., Kang, I., Ferriera, S., Giovannoni, S. J., and Cho, J. C. (2010). Complete genome sequence of Croceibacter atlanticus H7CC2559(T). J. Bacteriol. 192,4796-4797.
    • (2010) J. Bacteriol. , vol.192 , pp. 4796-4797
    • Oh, H.M.1    Kang, I.2    Ferriera, S.3    Giovannoni, S.J.4    Cho, J.C.5
  • 135
    • 78650149923 scopus 로고    scopus 로고
    • Complete genome sequence of strain HTCC2170, anovel member of the genus Maribacter in the family Flavobacteriaceae
    • Oh, H. M., Kang, I., Yang, S. J., Jang, Y, Vergin, K. L., Giovannoni, S. J., and Cho, J. C. (2011). Complete genome sequence of strain HTCC2170, anovel member of the genus Maribacter in the family Flavobacteriaceae. J. Bacteriol. 193,303-304.
    • (2011) J. Bacteriol. , vol.193 , pp. 303-304
    • Oh, H.M.1    Kang, I.2    Yang, S.J.3    Jang, Y.4    Vergin, K.L.5    Giovannoni, S.J.6    Cho, J.C.7
  • 136
    • 33845788303 scopus 로고    scopus 로고
    • Isolation of aerobic, gliding, xylano-lytic and laminarinolytic bacteria from acidic Sphagnum peatlands and emended description of Chitinophaga arvensicoh Kampfer et al. 2006
    • Pankratov, T. A., Kulichevskaya, I. S., Liesack, W, and Dedysh, S. N. (2006). Isolation of aerobic, gliding, xylano-lytic and laminarinolytic bacteria from acidic Sphagnum peatlands and emended description of Chitinophaga arvensicoh Kampfer et al. 2006. Int. J. Syst. Evol. Microbiol. 56,2761-2764.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 2761-2764
    • Pankratov, T.A.1    Kulichevskaya, I.S.2    Liesack, W.3    Dedysh, S.N.4
  • 139
  • 140
    • 0033561232 scopus 로고    scopus 로고
    • Photosynthesis, respiration, and carbon turnover in sinking marine snowfrom surface waters of Southern California Bight: implications for the carbon cycle in the ocean
    • Ploug, H., Grossart, H. P., Azam, E, and Jorgensen, B. B. (1999). Photosynthesis, respiration, and carbon turnover in sinking marine snowfrom surface waters of Southern California Bight: implications for the carbon cycle in the ocean. Mar. Ecol. Prog.Ser. 179,1-11.
    • (1999) Mar. Ecol. Prog. Ser. , vol.179 , pp. 1-11
    • Ploug, H.1    Grossart, H.P.2    Azam, E.3    Jorgensen, B.B.4
  • 144
    • 78149466996 scopus 로고    scopus 로고
    • Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche
    • Purushe, J., Fouts, D. E., Morrison, M., White, B. A., Mackie, R. I., Coutinho, P. M., Henrissat, B., and Nelson, K. E. (2010). Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche. Microb. Ecol. 60,721-729.
    • (2010) Microb. Ecol. , vol.60 , pp. 721-729
    • Purushe, J.1    Fouts, D.E.2    Morrison, M.3    White, B.A.4    Mackie, R.I.5    Coutinho, P.M.6    Henrissat, B.7    Nelson, K.E.8
  • 145
    • 77950888128 scopus 로고    scopus 로고
    • The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation
    • doi: 10.1186/1471-2164-11-247
    • Qin, Q. L., Zhang, X. Y, Wang, X. M., Liu, G. M., Chen, X. L., Xie, B. B., Dang, H. Y, Zhou, B. C, Yu, J., and Zhang, Y Z. (2010). The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation. BMC Genomics 11, 247. doi: 10.1186/1471-2164-11-247
    • (2010) BMC Genomics , vol.11 , pp. 247
    • Qin, Q.L.1    Zhang, X.Y.2    Wang, X.M.3    Liu, G.M.4    Chen, X.L.5    Xie, B.B.6    Dang, H.Y.7    Zhou, B.C.8    Yu, J.9    Zhang, Y.Z.10
  • 146
    • 15744403559 scopus 로고    scopus 로고
    • Structural insights into biological roles of protein-glycosaminoglycan interactions
    • Raman, R., Sasisekharan, V., and Sasisekharan, R. (2005). Structural insights into biological roles of protein-glycosaminoglycan interactions. Chem. Biol. 12,267-277.
    • (2005) Chem. Biol. , vol.12 , pp. 267-277
    • Raman, R.1    Sasisekharan, V.2    Sasisekharan, R.3
  • 147
    • 0542442094 scopus 로고    scopus 로고
    • High phylogenetic diversity in a marine-snow-associated bacterial assemblage
    • Rath, J., Wu, K. Y., Herndl, G. J., and Delong, E. F. (1998). High phylogenetic diversity in a marine-snow-associated bacterial assemblage. Aquat. Microb. Ecol. 14,261-269.
    • (1998) Aquat. Microb. Ecol. , vol.14 , pp. 261-269
    • Rath, J.1    Wu, K.Y.2    Herndl, G.J.3    Delong, E.F.4
  • 150
    • 77957885485 scopus 로고    scopus 로고
    • The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves
    • Redford, A. J., Bowers, R. M., Knight, R., Linhart, Y, and Fierer, N. (2010). The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environ. Microbiol. 12, 2885-2893.
    • (2010) Environ. Microbiol. , vol.12 , pp. 2885-2893
    • Redford, A.J.1    Bowers, R.M.2    Knight, R.3    Linhart, Y.4    Fierer, N.5
  • 151
    • 0031015878 scopus 로고    scopus 로고
    • Characterization of four outer membrane proteins that play a role in utilization of starch by Bacteroides thetaiotaomicron
    • Reeves, A. R., Wang, G. R., and Salyers, A. A. (1997). Characterization of four outer membrane proteins that play a role in utilization of starch by Bacteroides thetaiotaomicron. J. Bacteriol. 179, 643-649.
    • (1997) J. Bacteriol. , vol.179 , pp. 643-649
    • Reeves, A.R.1    Wang, G.R.2    Salyers, A.A.3
  • 152
    • 84858755014 scopus 로고    scopus 로고
    • The order cytophagales
    • Reichenbach, H. (2006). The order cytophagales. Prokaryotes 7, 549-590.
    • (2006) Prokaryotes , vol.7 , pp. 549-590
    • Reichenbach, H.1
  • 153
    • 0033951021 scopus 로고    scopus 로고
    • Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
    • Riemann, L., Steward, G. E, and Azam, E (2000). Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl. Environ. Microbiol. 66, 578-587.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 578-587
    • Riemann, L.1    Steward, G.E.2    Azam, E.3
  • 154
    • 0018826669 scopus 로고
    • Effect of secreted Bacteroides proteases on human intestinal brush border hydrolases
    • Riepe, S. P., Goldstein, J., and Alpers, D. H. (1980). Effect of secreted Bacteroides proteases on human intestinal brush border hydrolases. J. Clin. Invest. 66, 314-322.
    • (1980) J. Clin. Invest. , vol.66 , pp. 314-322
    • Riepe, S.P.1    Goldstein, J.2    Alpers, D.H.3
  • 156
    • 14544295338 scopus 로고    scopus 로고
    • Microbes, immunoregulation, and the gut
    • Rook, G. A., and Brunet, L. R. (2005). Microbes, immunoregulation, and the gut. Gut 54, 317-320.
    • (2005) Gut , vol.54 , pp. 317-320
    • Rook, G.A.1    Brunet, L.R.2
  • 157
    • 0017109240 scopus 로고
    • Extracellular enzymes of the genus Bacteroides
    • Rudek, W., and Haque, R. U. (1976). Extracellular enzymes of the genus Bacteroides. J. Clin. Microbiol. 4, 458-460.
    • (1976) J. Clin. Microbiol. , vol.4 , pp. 458-460
    • Rudek, W.1    Haque, R.U.2
  • 158
    • 73349101558 scopus 로고    scopus 로고
    • Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endosymbiont
    • Sabree, Z. L., Kambhampati, S., and Moran, N. A. (2009). Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endo-symbiont. Proc. Natl. Acad. Sci. U.S.A. 106,19521-19526.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 19521-19526
    • Sabree, Z.L.1    Kambhampati, S.2    Moran, N.A.3
  • 159
    • 75749132340 scopus 로고    scopus 로고
    • Whole-cell spectroscopy is a convenient tool to assist molecular identification of cultivatable marine bacteria and to investigate their adaptive metabolism
    • Salaun, S., Kervarec, N., Potin, P., Haras, D., Piotto, M., and La Barre, S. (2010). Whole-cell spectroscopy is a convenient tool to assist molecular identification of cultivatable marine bacteria and to investigate their adaptive metabolism. Talanta 80, 1758-1770.
    • (2010) Talanta , vol.80 , pp. 1758-1770
    • Salaun, S.1    Kervarec, N.2    Potin, P.3    Haras, D.4    Piotto, M.5    La Barre, S.6
  • 160
    • 0017381987 scopus 로고
    • Fermentation of mucinandplant polysaccharides by strains of Bacteroides from the human colon
    • Salyers, A. A., Vercellotti, J. R., West, S. E., and Wilkins, T. D. (1977). Fermentation of mucinandplant polysaccharides by strains of Bacteroides from the human colon. Appl Environ. Microbiol 33,319-322.
    • (1977) Appl Environ. Microbiol. , vol.33 , pp. 319-322
    • Salyers, A.A.1    Vercellotti, J.R.2    West, S.E.3    Wilkins, T.D.4
  • 161
    • 0014233150 scopus 로고
    • The gastrointestinal epithelium and its autochthonous bacterial flora
    • Savage, D. C, Dubos, R., and Schaedler, R. W. (1968). The gastrointestinal epithelium and its autochthonous bacterial flora.J. Exp. Med. 127, 67-76.
    • (1968) J. Exp. Med. , vol.127 , pp. 67-76
    • Savage, D.C.1    Dubos, R.2    Schaedler, R.W.3
  • 162
    • 0142136145 scopus 로고    scopus 로고
    • Phylogenetic diversity, abundance, and axial distribution of bacteriain the intestinal tract of two soil-feeding termites (Cubitermesspp )
    • Schmitt-Wagner, D., Friedrich, M. W., Wagner, B., and Brune, A. (2003). Phylogenetic diversity, abundance, and axial distribution of bacteriain the intestinal tract of two soil-feeding termites (Cubitermesspp.). Appl Environ. Microbiol. 69, 6007-6017.
    • (2003) Appl Environ. Microbiol. , vol.69 , pp. 6007-6017
    • Schmitt-Wagner, D.1    Friedrich, M.W.2    Wagner, B.3    Brune, A.4
  • 163
    • 75749107844 scopus 로고    scopus 로고
    • The genome of the amoeba symbiont "Candidatus Amoebophilus asiaticus" reveals common mechanisms for host cell interaction among amoeba-associated bacteria
    • Schmitz-Esser, S., Tischler, P., Arnold, R., Montanaro, J., Wagner, M., Rattei, T., and Horn, M. (2010). The genome of the amoeba symbiont "Candidatus Amoebophilus asiaticus" reveals common mechanisms for host cell interaction among amoeba-associated bacteria.J. Bacteriol. 192,1045-1057.
    • (2010) J. Bacteriol. , vol.192 , pp. 1045-1057
    • Schmitz-Esser, S.1    Tischler, P.2    Arnold, R.3    Montanaro, J.4    Wagner, M.5    Rattei, T.6    Horn, M.7
  • 164
    • 46149120624 scopus 로고    scopus 로고
    • Comparison of the cecal microbiota of domestic and wild turkeys
    • Scupham, A. J., Patton, T. G., Bent, E., and Bayles, D. O. (2008). Comparison of the cecal microbiota of domestic and wild turkeys. Microb. Ecol. 56,322-331.
    • (2008) Microb. Ecol. , vol.56 , pp. 322-331
    • Scupham, A.J.1    Patton, T.G.2    Bent, E.3    Bayles, D.O.4
  • 165
    • 0027492903 scopus 로고
    • Riemerella anatipestifer gene nov. comb, nov., the causative agent of septicemia anserum exsudativa, and its phylogenetic affiliation within the Flavobacterium-Cytophaga rRNA homologygroup
    • Segers, P., Mannheim, W., Vancanneyt, M., De Brandt, K., Hinz, K. H., Kersters, K., and Vandamme, P. (1993). Riemerella anatipestifer gene nov. comb, nov., the causative agent of septicemia anserum exsudativa, and its phylogenetic affiliation within the Flavobacterium-Cytophaga rRNA homologygroup. Int. J. Syst. Bacteriol 43, 768-776.
    • (1993) Int. J. Syst. Bacteriol. , vol.43 , pp. 768-776
    • Segers, P.1    Mannheim, W.2    Vancanneyt, M.3    De Brandt, K.4    Hinz, K.H.5    Kersters, K.6    Vandamme, P.7
  • 166
    • 0034017583 scopus 로고    scopus 로고
    • Quantification of bacterial groups within human fecal flora by oligonu-cleotide probe hybridization
    • Sghir, A., Gramet, G., Suau, A., Rochet, V., Pochart, P., and Dore, J. (2000). Quantification of bacterial groups within human fecal flora by oligonu-cleotide probe hybridization. Appl Environ. Microbiol 66,2263-2266.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2263-2266
    • Sghir, A.1    Gramet, G.2    Suau, A.3    Rochet, V.4    Pochart, P.5    Dore, J.6
  • 167
    • 0025344613 scopus 로고
    • Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides
    • Shah, H. N., and Collins, D. M. (1990). Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classified in the genus Bacteroides. Int. J. Syst. Bacteriol 40,205-208.
    • (1990) Int. J. Syst. Bacteriol. , vol.40 , pp. 205-208
    • Shah, H.N.1    Collins, D.M.2
  • 168
    • 0033802036 scopus 로고    scopus 로고
    • Characterization of four outer membrane proteins involved in binding starch to the cell surface of Bacteroides thetaiotaomicron
    • Shipman, J. A., Berleman, J. E., and Salyers, A. A. (2000). Characterization of four outer membrane proteins involved in binding starch to the cell surface of Bacteroides thetaiotaomicron. J. Bacteriol 182,5365-5372.
    • (2000) J. Bacteriol. , vol.182 , pp. 5365-5372
    • Shipman, J.A.1    Berleman, J.E.2    Salyers, A.A.3
  • 169
    • 0345148490 scopus 로고    scopus 로고
    • Physiological characterization of SusG, an outer membrane protein essential for starch utilization by Bacteroides thetaiotaomicron
    • Shipman, J. A., Cho, K. H., Siegel, H. A., andSalyers.A. A. (1999). Physiological characterization of SusG, an outer membrane protein essential for starch utilization by Bacteroides thetaiotaomicron. J. Bacteriol 181,7206-7211.
    • (1999) J. Bacteriol. , vol.181 , pp. 7206-7211
    • Shipman, J.A.1    Cho, K.H.2    Siegel, H.A.3    Salyers, A.A.4
  • 170
    • 0035142427 scopus 로고    scopus 로고
    • Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon
    • Shoemaker, N. B., Vlamakis, H., Hayes, K., and Salyers, A. A. (2001). Evidence for extensive resistance gene transfer among Bacteroides spp. and among Bacteroides and other genera in the human colon. Appl. Environ. Microbiol 67, 561-568.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 561-568
    • Shoemaker, N.B.1    Vlamakis, H.2    Hayes, K.3    Salyers, A.A.4
  • 171
    • 0033931987 scopus 로고    scopus 로고
    • Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece)
    • Sievert, S. M., Kuever, J., and Muyzer, G. (2000). Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl. Environ. Microbiol. 66, 3102-3109.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3102-3109
    • Sievert, S.M.1    Kuever, J.2    Muyzer, G.3
  • 172
    • 0033029039 scopus 로고    scopus 로고
    • Resistant starch modifies gut microflora and microbial metabolism in human flora-associated rats inoculated with faeces from Italian and UK donors
    • Silvi, S., Rumney, C. J., Cresci, A., and Rowland, I. R. (1999). Resistant starch modifies gut microflora and microbial metabolism in human flora-associated rats inoculated with faeces from Italian and UK donors. J. Appl Microbiol 86, 521-530.
    • (1999) J. Appl Microbiol. , vol.86 , pp. 521-530
    • Silvi, S.1    Rumney, C.J.2    Cresci, A.3    Rowland, I.R.4
  • 173
    • 0035207996 scopus 로고    scopus 로고
    • Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir
    • Simek, K., Armengol, J., Comerma, M., Garcia, J. C, Kojecka, P., Nedoma, J., and Hejzlar, J. (2001). Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microb.Ecol 42, 359-371.
    • (2001) Microb. Ecol. , vol.42 , pp. 359-371
    • Simek, K.1    Armengol, J.2    Comerma, M.3    Garcia, J.C.4    Kojecka, P.5    Nedoma, J.6    Hejzlar, J.7
  • 174
    • 0344132574 scopus 로고    scopus 로고
    • Different community structure and temperature optima of heterotrophic picoplankton in various regions of the Southern Ocean
    • Simon, M., Glockner, E O., and Amann, R. (1999). Different community structure and temperature optima of heterotrophic picoplankton in various regions of the Southern Ocean. Aquat. Microb.Ecol 18,275-284.
    • (1999) Aquat. Microb. Ecol. , vol.18 , pp. 275-284
    • Simon, M.1    Glockner, E.O.2    Amann, R.3
  • 175
    • 0037196047 scopus 로고    scopus 로고
    • Algicidal bacteria associated with blooms of a toxic dinoflagellate in a temperate Australian estuary
    • Skerratt, J. H., Bowman, J. P., Hallegraeff G., James, S., and Nichols, P. D. (2002). Algicidal bacteria associated with blooms of a toxic dinoflagellate in a temperate Australian estuary. Mar. Ecol Prog. Ser. 244,1-15.
    • (2002) Mar. Ecol Prog. Ser. , vol.244 , pp. 1-15
    • Skerratt, J.H.1    Bowman, J.P.2    Hallegraeff, G.3    James, S.4    Nichols, P.D.5
  • 176
    • 0018314065 scopus 로고
    • Introduction to metabolic activities of intestinal bacteria
    • Smith, C. J., and Bryant, M. P. (1979). Introduction to metabolic activities of intestinal bacteria. Am. J. Clin. Nutr. 32,149-157.
    • (1979) Am. J. Clin. Nutr. , vol.32 , pp. 149-157
    • Smith, C.J.1    Bryant, M.P.2
  • 177
    • 36849044887 scopus 로고    scopus 로고
    • The medically important Bacteroides spp. in health and disease
    • Smith, C. J., Rocha, E. R., and Paster, B. J. (2006). The medically important Bacteroides spp. in health and disease. Prokaryotes 7, 381-427.
    • (2006) Prokaryotes , vol.7 , pp. 381-427
    • Smith, C.J.1    Rocha, E.R.2    Paster, B.J.3
  • 179
    • 77953901767 scopus 로고    scopus 로고
    • Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations
    • Sonnenburg, E. D., Zheng, H., Joglekar, P., Higginbottom, S. K., Firbank, S. J., Bolam, D. N., and Sonnenburg, J. L. (2010). Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations. Cell 141,1241-1252.
    • (2010) Cell , vol.141 , pp. 1241-1252
    • Sonnenburg, E.D.1    Zheng, H.2    Joglekar, P.3    Higginbottom, S.K.4    Firbank, S.J.5    Bolam, D.N.6    Sonnenburg, J.L.7
  • 180
    • 77950837750 scopus 로고    scopus 로고
    • Microbiology: genetic pot luck
    • Sonnenburg, J. L. (2010). Microbiology: genetic pot luck. Nat Mre, 464,837-838.
    • (2010) Nat Mre , vol.464 , pp. 837-838
    • Sonnenburg, J.L.1
  • 181
    • 0033917639 scopus 로고    scopus 로고
    • Plant-pathogen arms races at the molecular level
    • Stahl.E. A., and Bishop, J.G. (2000). Plant-pathogen arms races at the molecular level. Curr. Opin. Plant Biol. 3, 299-304.
    • (2000) Curr. Opin. Plant Biol. , vol.3 , pp. 299-304
    • Stahl, E.A.1    Bishop, J.G.2
  • 182
    • 40549123753 scopus 로고    scopus 로고
    • Phylogenetic analysis of bacteria associated with Laminaria saccharina
    • Staufenberger, T, Thiel, V., Wiese, J., and Imhoff, J. F. (2008). Phylogenetic analysis of bacteria associated with Laminaria saccharina. FEMS Microbiol Ecol 64, 65-77.
    • (2008) FEMS Microbiol Ecol , vol.64 , pp. 65-77
    • Staufenberger, T.1    Thiel, V.2    Wiese, J.3    Imhoff, J.F.4
  • 183
    • 0036818793 scopus 로고    scopus 로고
    • Heparin and heparan sulfate biosynthesis
    • Sugahara, K., and Kitagawa, H. (2002). Heparin and heparan sulfate biosynthesis. IUBMB Life 54,163-175.
    • (2002) IUBMB Life , vol.54 , pp. 163-175
    • Sugahara, K.1    Kitagawa, H.2
  • 185
    • 33751383630 scopus 로고    scopus 로고
    • Chondroitin AC lyase activity is related to virulence of fish pathogenic Flavobacterium columnare
    • Suomalainen, L.-R., Tiirola, M., and Valtonen, E. T. (2006). Chondroitin AC lyase activity is related to virulence of fish pathogenic Flavobacterium columnare. J. Fish Dis. 29, 701-770.
    • (2006) J. Fish Dis. , vol.29 , pp. 701-770
    • Suomalainen, L.-R.1    Tiirola, M.2    Valtonen, E.T.3
  • 187
    • 0022596102 scopus 로고
    • Bacteroidesforsythus sp. nov, a slow-growing Fusiform Bacteroides sp. from the human oral cavity
    • Tanner, A. C. R., Listgarten, M. A., Ebersole, J. L., and Strzempko, M. N. (1986). Bacteroidesforsythus sp. nov, a slow-growing, Fusiform Bacteroides sp. from the human oral cavity. Int. J. Syst. Bacteriol 36,213-221.
    • (1986) Int. J. Syst. Bacteriol. , vol.36 , pp. 213-221
    • Tanner, A.C.R.1    Listgarten, M.A.2    Ebersole, J.L.3    Strzempko, M.N.4
  • 188
    • 23944475626 scopus 로고    scopus 로고
    • Mechanisms of, and barriers to, horizontal gene transfer between bacteria
    • Thomas, C. M., and Nielsen, K. M. (2005). Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol 3, 711-721.
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 711-721
    • Thomas, C.M.1    Nielsen, K.M.2
  • 189
    • 0027936450 scopus 로고
    • Molecular cloning and expression in Escherichia coli of genes encoding pectate lyase and pectin methylesterase activities from Bacteroides thetaiotaomicron
    • Tierny, Y, Bechet, M., Joncquiert, J. C, Dubourguier, H. C, and Guillaume, J. B. (1994). Molecular cloning and expression in Escherichia coli of genes encoding pectate lyase and pectin methylesterase activities from Bacteroides thetaiotaomicron. J. Appl Bacteriol 76, 592-602.
    • (1994) J. Appl Bacteriol. , vol.76 , pp. 592-602
    • Tierny, Y.1    Bechet, M.2    Joncquiert, J.C.3    Dubourguier, H.C.4    Guillaume, J.B.5
  • 190
    • 77958063480 scopus 로고    scopus 로고
    • Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes
    • Turnbaugh, P. J., Henrissat, B., and Gordon, J. I. (2010). Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes. Acta Crystallogr. Sect. F Struct. Biol Cryst. Commun. 66,1261-1264.
    • (2010) Acta Crystallogr. Sect. F Struct. Biol Cryst. Commun. , vol.66 , pp. 1261-1264
    • Turnbaugh, P.J.1    Henrissat, B.2    Gordon, J.I.3
  • 192
    • 77950669604 scopus 로고    scopus 로고
    • The effect of diet on the human gut microbiome: a metagen-omic analysis in humanized gnotobiotic mice
    • 6ral4
    • Turnbaugh, P. J., Ridaura, V. K., Faith, J. J., Rey F. E., Knight, R., and Gordon, J. I. (2009). The effect of diet on the human gut microbiome: a metagen-omic analysis in humanized gnotobiotic mice. Sci. Transl Med. 1, 6ral4.
    • (2009) Sci. Transl Med. , vol.1
    • Turnbaugh, P.J.1    Ridaura, V.K.2    Faith, J.J.3    Rey, F.E.4    Knight, R.5    Gordon, J.I.6
  • 193
    • 33845396036 scopus 로고
    • Microbiological studies of diseased Eucheuma sp. and other seaweeds
    • Manilla, Philippines
    • Uyenco, F. R. (1977). Microbiological studies of diseased Eucheuma sp. and other seaweeds," in National Seaweeds Symposium, Manilla, Philippines.
    • (1977) National Seaweeds Symposium
    • Uyenco, F.R.1
  • 194
    • 0032975678 scopus 로고    scopus 로고
    • Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses
    • van Hannen, E. J., Zwart, G., Van Agterveld, M. P., Gons, H. J., Ebert, J., and Laanbroek, H. J. (1999). Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses. Appl Environ. Microbiol 65,795-801.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 795-801
    • Van Hannen, E.J.1    Zwart, G.2    Van Agterveld, M.P.3    Gons, H.J.4    Ebert, J.5    Laanbroek, H.J.6
  • 196
    • 0032898971 scopus 로고    scopus 로고
    • Coenonia anatina gen. nov., sp. nov, a novel bacterium associated with respiratory disease in ducks and geese
    • Vandamme, P., Vancanneyt, M., Segers, P., Ryll, M., Kohler, B., Ludwig, W, and Hinz, K.H. (1999). Coenonia anatina gen. nov., sp. nov, a novel bacterium associated with respiratory disease in ducks and geese. Int. J. Syst. Bacteriol 49, 867-874.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 867-874
    • Vandamme, P.1    Vancanneyt, M.2    Segers, P.3    Ryll, M.4    Kohler, B.5    Ludwig, W.6    Hinz, K.H.7
  • 198
    • 35448985445 scopus 로고    scopus 로고
    • Bacteroides: the good, the bad, and the nitty-gritty
    • Wexler, H. M. (2007). Bacteroides: the good, the bad, and the nitty-gritty. Clin. Microbiol Rev. 20, 593-621.
    • (2007) Clin. Microbiol Rev. , vol.20 , pp. 593-621
    • Wexler, H.M.1
  • 200
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. (1987). Bacterial evolution. Microbiol Rev. 51,221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 202
    • 0020710588 scopus 로고
    • Dietary intake, energy metabolism, and excretory losses of adult male germfree Wistar rats
    • Wostmann, B. S., Larkin, C, Moriarty A., and Bruckner-Kardoss, E. (1983). Dietary intake, energy metabolism, and excretory losses of adult male germfree Wistar rats. Lab. Anim. Sci. 33,46-50.
    • (1983) Lab. Anim. Sci. , vol.33 , pp. 46-50
    • Wostmann, B.S.1    Larkin, C.2    Moriarty, A.3    Bruckner-Kardoss, E.4
  • 207
    • 70350147031 scopus 로고    scopus 로고
    • Phylogenetic analysis on the soil bacteria distributed in karst forest Braz
    • Zhou, J. P., Huang, Y., and Mo, M. (2009). Phylogenetic analysis on the soil bacteria distributed in karst forest. Braz.]. Microbiol. 40, 827-837.
    • (2009) J. Microbiol. , vol.40 , pp. 827-837
    • Zhou, J.P.1    Huang, Y.2    Mo, M.3
  • 208
    • 0036136459 scopus 로고    scopus 로고
    • 16SrRNA-based analysis of microbiota from the cecum of broiler chickens
    • Zhu, X. Y., Zhong, T., Pandya, Y, and Joerger,R.D. (2002). 16SrRNA-based analysis of microbiota from the cecum of broiler chickens. Appl. Environ. Microbiol. 68,124-137.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 124-137
    • Zhu, X.Y.1    Zhong, T.2    Pandya, Y.3    Joerger, R.D.4
  • 210
    • 0037178021 scopus 로고    scopus 로고
    • Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers
    • Zwart, G., Crump, B. C, Kamst-Van Agterveld, M. P., Hagen, F., and Han, S. K. (2002). Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat. Microb. Ecol. 28,141-155.
    • (2002) Aquat. Microb. Ecol. , vol.28 , pp. 141-155
    • Zwart, G.1    Crump, B.C.2    Kamst-Van Agterveld, M.P.3    Hagen, F.4    Han, S.K.5


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