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Volumn 27, Issue 24, 2011, Pages 3425-3426

Visualization and quality assessment of de novo genome assemblies

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; CHROMOSOME MAP; COMPUTER PROGRAM; DNA SEQUENCE; GENOME; METHODOLOGY; SYNTENY;

EID: 83355175377     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr569     Document Type: Article
Times cited : (6)

References (11)
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    • Gene network visualization and quantitative synteny analysis of more than 300 marine T4-like phage scaffolds from the GOS metagenome
    • Comeau, A.M. et al. (2010) Gene network visualization and quantitative synteny analysis of more than 300 marine T4-like phage scaffolds from the GOS metagenome. Mol. Biol. Evol., 27, 1935-1944.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 1935-1944
    • Comeau, A.M.1
  • 2
    • 71049176982 scopus 로고    scopus 로고
    • A proposal to obtain whole-genome sequence for 10 000 vertebrate species
    • Genome 10K. Community of Scientists
    • Genome 10K Community of Scientists. (2009) A proposal to obtain whole-genome sequence for 10 000 vertebrate species. J. Hered. 100, 659-674.
    • (2009) J. Hered. , vol.100 , pp. 659-674
  • 3
    • 77955076707 scopus 로고    scopus 로고
    • Assembling genomes using short-read sequencing technology
    • Jackman, S.D. and Birol, I. (2010) Assembling genomes using short-read sequencing technology. Genome Biol., 11, 202.
    • (2010) Genome Biol. , vol.11 , pp. 202
    • Jackman, S.D.1    Birol, I.2
  • 4
    • 70350655607 scopus 로고    scopus 로고
    • ABySS-Explorer: visualizing genome sequence assemblies
    • Nielsen, C.B. et al. (2009) ABySS-Explorer: visualizing genome sequence assemblies. IEEE Trans. Vis. Comput. Graph., 15, 881-888.
    • (2009) IEEE Trans. Vis. Comput. Graph. , vol.15 , pp. 881-888
    • Nielsen, C.B.1
  • 5
    • 77649253051 scopus 로고    scopus 로고
    • Visualizing genomes: techniques and challenges
    • Nielsen, C.B. et al. (2010) Visualizing genomes: techniques and challenges. Nat. Methods, 7 (Suppl. 3), S5-S15.
    • (2010) Nat. Methods. , vol.7 , Issue.SUPPL. 3
    • Nielsen, C.B.1
  • 6
    • 77957287342 scopus 로고    scopus 로고
    • De novo assembly of short sequence reads
    • Paszkiewicz, K. and Studholme, DJ. (2010) De novo assembly of short sequence reads. Brief. Bioinform., 11, 457-472.
    • (2010) Brief. Bioinform. , vol.11 , pp. 457-472
    • Paszkiewicz, K.1    Studholme, D.J.2
  • 7
    • 58549121169 scopus 로고    scopus 로고
    • Assessing the gene space in draft genomes
    • Parra, G. et al. (2009) Assessing the gene space in draft genomes. Nucleic Acids Res., 37, 289-297.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 289-297
    • Parra, G.1
  • 8
    • 79952781362 scopus 로고    scopus 로고
    • Creating a buzz about insect genomes
    • Robinson, G.E. et al. (2011) Creating a buzz about insect genomes. Science, 331, 1386.
    • (2011) Science , vol.331 , pp. 1386
    • Robinson, G.E.1
  • 9
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • Shannon, P. et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1
  • 10
    • 35748962289 scopus 로고    scopus 로고
    • Tools for visually exploring biological networks
    • Suderman, M. and Hallett, M. (2007) Tools for visually exploring biological networks. Bioinformatics, 23, 2651-2659.
    • (2007) Bioinformatics , vol.23 , pp. 2651-2659
    • Suderman, M.1    Hallett, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.