Comparison of the two major classes of assembly algorithms: Overlap-layout-consensus and de-bruijn-graph

Briefings in Functional Genomics

Volumn 11, Issue 1, 2012, Pages 25-37

  Li, Zhenyu ^a   Chen, Yanxiang ^a   Mu, Desheng ^a   Yuan, Jianying ^a   Shi, Yujian ^a   Zhang, Hao ^a   Gan, Jun ^a   Li, Nan ^a   Hu, Xuesong ^a   Liu, Binghang ^a   Yang, Bicheng ^b   Fan, Wei ^a  

^a BGI SHENZHEN   (China)

^b BGI SZ   (China)

Author keywords

DBG; De novo assembly; OLC; Second generation

Indexed keywords

CONTIG; MOLECULAR SCAFFOLD;

ALGORITHM; ARTICLE; COMPARATIVE STUDY; DE BRUIJN GRAPH; GENE SEQUENCE; GENOME ANALYSIS; GENOME SIZE; GENOMICS; HAPLOIDY; HETEROZYGOSITY; HUMAN; HUMAN GENOME; NONHUMAN; OVERLAP LAYOUT CONSENSUS; POLYMERASE CHAIN REACTION; READ CODING; SHORT TANDEM REPEAT;

ALGORITHMS; ANIMALS; DATABASES, NUCLEIC ACID; MODELS, GENETIC; SEQUENCE ANALYSIS, DNA; STATISTICS AS TOPIC;

EID: 84863181401     PISSN: 20412649     EISSN: 20412657     Source Type: Journal    
DOI: 10.1093/bfgp/elr035     Document Type: Article

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