메뉴 건너뛰기




Volumn 41, Issue D1, 2013, Pages

MicroScope - An integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME;

EID: 84876580700     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks1194     Document Type: Article
Times cited : (314)

References (36)
  • 2
    • 36949032098 scopus 로고    scopus 로고
    • Annotation, comparison and databases for hundreds of bacterial genomes
    • Medigue, C. and Moszer, I. (2007) Annotation, comparison and databases for hundreds of bacterial genomes. Res. Microbiol., 158, 724-736.
    • (2007) Res. Microbiol. , vol.158 , pp. 724-736
    • Medigue, C.1    Moszer, I.2
  • 3
    • 84859436530 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): Current status, new features and genome annotation policy
    • Pruitt, K.D., Tatusova, T., Brown, G.R. and Maglott, D.R. (2012) NCBI reference sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res., 40, D130-D135.
    • (2012) Nucleic Acids Res. , vol.40
    • Pruitt, K.D.1    Tatusova, T.2    Brown, G.R.3    Maglott, D.R.4
  • 5
    • 84865182842 scopus 로고    scopus 로고
    • The automatic annotation of bacterial genomes
    • March 9 (doi:10.1093/bib/bbs007; epub ahead of print)
    • Richardson, E.J. and Watson, M. (2012) The automatic annotation of bacterial genomes. Brief Bioinformatics, March 9 (doi:10.1093/bib/bbs007; epub ahead of print).
    • (2012) Brief Bioinformatics
    • Richardson, E.J.1    Watson, M.2
  • 7
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the Universal Protein Resource (UniProt)
    • The UniProt Consortium
    • The UniProt Consortium. (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res., 40, D71-D75.
    • (2012) Nucleic Acids Res. , vol.40
  • 12
    • 84858983547 scopus 로고    scopus 로고
    • KEGG for integration and interpretation of large-scale molecular data sets
    • Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
    • (2012) Nucleic Acids Res. , vol.40
    • Kanehisa, M.1    Goto, S.2    Sato, Y.3    Furumichi, M.4    Tanabe, M.5
  • 14
    • 73349120997 scopus 로고    scopus 로고
    • FIGfams: Yet another set of protein families
    • Meyer, F., Overbeek, R. and Rodriguez, A. (2009) FIGfams: yet another set of protein families. Nucleic Acids Res., 37, 6643-6654.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 6643-6654
    • Meyer, F.1    Overbeek, R.2    Rodriguez, A.3
  • 15
    • 64249084052 scopus 로고    scopus 로고
    • Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data
    • Chapter 8
    • Bachmann, B.O. and Ravel, J. (2009) Chapter 8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data. Methods Enzymol., 458, 181-217.
    • (2009) Methods Enzymol. , vol.458 , pp. 181-217
    • Bachmann, B.O.1    Ravel, J.2
  • 18
    • 84863208670 scopus 로고    scopus 로고
    • Magnetosomes eliminate intracellular reactive oxygen species in Magnetospirillum gryphiswaldense MSR-1
    • Guo, F.F., Yang, W., Jiang, W., Geng, S., Peng, T. and Li, J.L. (2012) Magnetosomes eliminate intracellular reactive oxygen species in Magnetospirillum gryphiswaldense MSR-1. Environ. Microbiol., 14, 1722-1729.
    • (2012) Environ. Microbiol. , vol.14 , pp. 1722-1729
    • Guo, F.F.1    Yang, W.2    Jiang, W.3    Geng, S.4    Peng, T.5    Li, J.L.6
  • 22
    • 65449188232 scopus 로고    scopus 로고
    • Jalview Version 2 - A multiple sequence alignment editor and analysis workbench
    • Waterhouse, A.M., Procter, J.B., Martin, D.M., Clamp, M. and Barton, G.J. (2009) Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
    • (2009) Bioinformatics , vol.25 , pp. 1189-1191
    • Waterhouse, A.M.1    Procter, J.B.2    Martin, D.M.3    Clamp, M.4    Barton, G.J.5
  • 23
    • 84856982530 scopus 로고    scopus 로고
    • Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC
    • Engelen, S., Vallenet, D., Medigue, C. and Danchin, A. (2012) Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC. BMC Genomics, 13, 69.
    • (2012) BMC Genomics , vol.13 , pp. 69
    • Engelen, S.1    Vallenet, D.2    Medigue, C.3    Danchin, A.4
  • 25
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: A fast search method for large DNA databases
    • Ning, Z. (2001) SSAHA: a fast search method for large DNA databases. Genome Res., 11, 1725-1729.
    • (2001) Genome Res. , vol.11 , pp. 1725-1729
    • Ning, Z.1
  • 30
    • 84857081283 scopus 로고    scopus 로고
    • The pathway tools pathway prediction algorithm
    • Karp, P.D., Latendresse, M. and Caspi, R. (2011) The pathway tools pathway prediction algorithm. Stand. Genomic Sci., 5, 424-429.
    • (2011) Stand. Genomic Sci. , vol.5 , pp. 424-429
    • Karp, P.D.1    Latendresse, M.2    Caspi, R.3
  • 32
    • 84863669933 scopus 로고    scopus 로고
    • The CanOE strategy: Integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes
    • Smith, A.A., Belda, E., Viari, A., Medigue, C. and Vallenet, D. (2012) The CanOE strategy: integrating genomic and metabolic contexts across multiple prokaryote genomes to find candidate genes for orphan enzymes. PLoS Comput. Biol., 8, e1002540.
    • (2012) PLoS Comput. Biol. , vol.8
    • Smith, A.A.1    Belda, E.2    Viari, A.3    Medigue, C.4    Vallenet, D.5
  • 33
    • 75149129569 scopus 로고    scopus 로고
    • A protocol for generating a high-quality genome-scale metabolic reconstruction
    • Thiele, I. and Palsson, B.Ø. (2010) A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc., 5, 93-121.
    • (2010) Nat. Protoc. , vol.5 , pp. 93-121
    • Thiele, I.1    Palsson, B.O.2
  • 36
    • 0028133201 scopus 로고
    • Studies of the biosynthesis of 3,6-dideoxyhexoses: Molecular cloning and characterization of the asc (ascarylose) region from Yersinia pseudotuberculosis serogroup VA
    • Thorson, J.S., Lo, S.F., Ploux, O., He, X. and Liu, H.W. (1994) Studies of the biosynthesis of 3,6-dideoxyhexoses: molecular cloning and characterization of the asc (ascarylose) region from Yersinia pseudotuberculosis serogroup VA. J. Bacteriol., 176, 5483-5493.
    • (1994) J. Bacteriol. , vol.176 , pp. 5483-5493
    • Thorson, J.S.1    Lo, S.F.2    Ploux, O.3    He, X.4    Liu, H.W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.