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Volumn 31, Issue 4, 2015, Pages 587-589

A5-miseq: An updated pipeline to assemble microbial genomes from Illumina MiSeq data

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

EID: 84928994303     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu661     Document Type: Article
Times cited : (899)

References (7)
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    • (2012) J. Comput. Biol. , vol.19 , pp. 455-477
    • Bankevich, A.1
  • 2
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    • QUAST: Quality assessment tool for genome assemblies
    • Gurevich, A. et al. (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics, 29, 1072-1075.
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    • Gurevich, A.1
  • 3
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    • RobiNA: A user-friendly, integrated software solution for RNA-Seq-based transcriptomics
    • Lohse, M. et al. (2012) RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Res., 40, W622-W627.
    • (2012) Nucleic Acids Res. , vol.40 , pp. W622-W627
    • Lohse, M.1
  • 4
    • 84880196418 scopus 로고    scopus 로고
    • GAGE-B: An evaluation of genome assemblers for bacterial organisms
    • Magoc, T. et al. (2013) GAGE-B: an evaluation of genome assemblers for bacterial organisms. Bioinformatics, 29, 1718-1725.
    • (2013) Bioinformatics , vol.29 , pp. 1718-1725
    • Magoc, T.1
  • 5
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: A de novo assembler for single-cell and metage-nomic sequencing data with highly uneven depth
    • Peng, Y. et al. (2013) IDBA-UD: a de novo assembler for single-cell and metage-nomic sequencing data with highly uneven depth. Bioinformatics, 28, 1420-1428.
    • (2013) Bioinformatics , vol.28 , pp. 1420-1428
    • Peng, Y.1
  • 6
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    • Efficient de novo assembly of large genomes using compressed data structures
    • Simpson, J.T. and Durbin, R. (2012) Efficient de novo assembly of large genomes using compressed data structures. Genome Res., 22, 549-556.
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    • Simpson, J.T.1    Durbin, R.2
  • 7
    • 84866391549 scopus 로고    scopus 로고
    • An integrated pipeline for de novo assembly of microbial genomes
    • Tritt, A. et al. (2012) An integrated pipeline for de novo assembly of microbial genomes. PLoS One, 7, e42304.
    • (2012) PLoS One , vol.7 , pp. e42304
    • Tritt, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.