-
1
-
-
34249860614
-
e-Science and biological pathway semantics
-
S
-
Luciano, J. S. & Stevens, R. D. e-Science and biological pathway semantics. BMC Bioinformatics 8, S3 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 3
-
-
Luciano, J.S.1
Stevens, R.D.2
-
3
-
-
0035455653
-
The anatomy of the Grid: Enabling scalable virtual organizations
-
Foster, I., Kesselman, C. & Tuecke, S. The anatomy of the Grid: Enabling scalable virtual organizations. Int. J. High Perform. Comput. Appl. 15, 200-222 (2001).
-
(2001)
Int. J. High Perform. Comput. Appl
, vol.15
, pp. 200-222
-
-
Foster, I.1
Kesselman, C.2
Tuecke, S.3
-
5
-
-
1842518312
-
-
eds Berman, F, Fox, G. & Hey, T
-
Thain, D., Tannenbaum, T. & Livny, M. in Grid Computing (eds Berman, F., Fox, G. & Hey, T.) 299-335 (2003).
-
(2003)
Grid Computing
, pp. 299-335
-
-
Thain, D.1
Tannenbaum, T.2
Livny, M.3
-
6
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich, J. E. et al. The Bioperl toolkit: Perl modules for the life sciences. Genome Res. 12, 1611-1618 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
-
7
-
-
0345276226
-
Biopython: Python tools for computational biology
-
Chapman, B. & Chang, J. Biopython: Python tools for computational biology. ACM SIGBIO Newsl. 20, 15-19 (2000).
-
(2000)
ACM SIGBIO Newsl
, vol.20
, pp. 15-19
-
-
Chapman, B.1
Chang, J.2
-
8
-
-
0011096627
-
BioJava: Open source components for bioinformatics
-
Pocock, M., Down, T. & Hubbard, T. BioJava: Open source components for bioinformatics. ACM SIGBIO Newsl. 20, 10-12 (2000).
-
(2000)
ACM SIGBIO Newsl
, vol.20
, pp. 10-12
-
-
Pocock, M.1
Down, T.2
Hubbard, T.3
-
9
-
-
10244255212
-
Taverna: A tool for the composition and enactment of bioinformatics workflows
-
Oinn, T. et al. Taverna: A tool for the composition and enactment of bioinformatics workflows. Bioinformatics 20, 3045-3054 (2004).
-
(2004)
Bioinformatics
, vol.20
, pp. 3045-3054
-
-
Oinn, T.1
-
11
-
-
0036328418
-
Unraveling the web services web: An introduction to SOAP, WSDL, and UDDI
-
Curbera, F. et al. Unraveling the web services web: An introduction to SOAP, WSDL, and UDDI. IEEE Internet Comput. 6 86-93 (2002).
-
(2002)
IEEE Internet Comput
, vol.6
, pp. 86-93
-
-
Curbera, F.1
-
13
-
-
0037935183
-
BioMOBY: An open source biological web services proposal
-
Wilkinson, M. D. & Links, M. BioMOBY: An open source biological web services proposal. Brief. Bioinformatics 3, 331-341 (2002).
-
(2002)
Brief. Bioinformatics
, vol.3
, pp. 331-341
-
-
Wilkinson, M.D.1
Links, M.2
-
14
-
-
0036601844
-
Grid services for distributed system integration
-
Foster, I., Kesselman, C., Nick, J. M. & Tuecke, S. Grid services for distributed system integration. Computer 35, 37-46 (2002).
-
(2002)
Computer
, vol.35
, pp. 37-46
-
-
Foster, I.1
Kesselman, C.2
Nick, J.M.3
Tuecke, S.4
-
15
-
-
33747833111
-
Taverna: A tool for building and running workflows of services
-
Hull, D. et al. Taverna: A tool for building and running workflows of services. Nucleic Acids Res. 34, W729-W732 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Hull, D.1
-
16
-
-
23144460649
-
SOAP-based services provided by the European Bioinformatics Institute
-
Pillai, S. et al. SOAP-based services provided by the European Bioinformatics Institute. Nucleic Acids Res. 33, W25-W28 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Pillai, S.1
-
17
-
-
20444465355
-
-
ed. Cox, S. J
-
Senger, M., Rice, P. & Oinn, T. in UK e-Science All Hands Meet. 2003 (ed. Cox, S. J.) 509-513 (2003).
-
(2003)
UK e-Science All Hands Meet. 2003
, pp. 509-513
-
-
Senger, M.1
Rice, P.2
Oinn, T.3
-
18
-
-
4744355824
-
-
ed. Shields, M
-
Majithia, S., Shields, M., Taylor, I. & Wang, I. in Proc. IEEE Intern. Conf. Web Services (ed. Shields, M.) 514-521 (2004).
-
(2004)
Proc. IEEE Intern. Conf. Web Services
, pp. 514-521
-
-
Majithia, S.1
Shields, M.2
Taylor, I.3
Wang, I.4
-
19
-
-
25444447098
-
Workflows in bioinformatics: Meta-analysis and prototype implementation of a workflow generator
-
Castro, A. G., Thoraval, S., Garcia, L. J. & Ragan, M. A. Workflows in bioinformatics: Meta-analysis and prototype implementation of a workflow generator. BMC Bioinform. 6, 87 (2005).
-
(2005)
BMC Bioinform
, vol.6
, pp. 87
-
-
Castro, A.G.1
Thoraval, S.2
Garcia, L.J.3
Ragan, M.A.4
-
20
-
-
33646040949
-
Scientific workflow management and the kepler system
-
Ludäscher, B. et al. Scientific workflow management and the kepler system. Concurr. Comput. Pract. Exper. 18, 1039-1065 (2006).
-
(2006)
Concurr. Comput. Pract. Exper
, vol.18
, pp. 1039-1065
-
-
Ludäscher, B.1
-
21
-
-
10444254454
-
myGrid and the drug discovery process
-
myGrid and the drug discovery process. Drug Discov. Today 2, 140-148 (2004).
-
(2004)
Drug Discov. Today
, vol.2
, pp. 140-148
-
-
Stevens, R.1
-
22
-
-
34548804918
-
A systematic strategy for large-scale analysis of genotype phenotype correlations: Identification of candidate genes involved in African trypanosomiasis
-
Fisher, P. et al. A systematic strategy for large-scale analysis of genotype phenotype correlations: Identification of candidate genes involved in African trypanosomiasis. Nucleic Acids Res. 35, 5625-5633 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5625-5633
-
-
Fisher, P.1
-
23
-
-
33745880405
-
Generalized simulated annealing applied to protein folding studies
-
Agostini, F. P., Soares-Pinto, D. O., Moret, M. A., Osthoff, C. & Pascutti, P. G. Generalized simulated annealing applied to protein folding studies. J. Comput. Chem. 11, 1142-1152 (2006).
-
(2006)
J. Comput. Chem
, vol.11
, pp. 1142-1152
-
-
Agostini, F.P.1
Soares-Pinto, D.O.2
Moret, M.A.3
Osthoff, C.4
Pascutti, P.G.5
-
24
-
-
56349127682
-
-
Craddock, T., Lord, P., Harwood, C. R. & Wipat, A. in Proc. 5th UK e-Science All Hands Meet. 788-795 (2006).
-
(2006)
Proc. 5th UK e-Science All Hands Meet
, pp. 788-795
-
-
Craddock, T.1
Lord, P.2
Harwood, C.R.3
Wipat, A.4
-
25
-
-
39049125071
-
Bacillus protein secretion: An unfolding story
-
Harwood, C. R. & Cranenburgh, R. Bacillus protein secretion: An unfolding story. Trends Microbiol. 16, 73-79 (2008).
-
(2008)
Trends Microbiol
, vol.16
, pp. 73-79
-
-
Harwood, C.R.1
Cranenburgh, R.2
-
26
-
-
0041341888
-
Prediction of lipoprotein signal peptides in Gram-negative bacteria
-
Juncker, A. S. et al. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci. 12, 1652-1662 (2003).
-
(2003)
Protein Sci
, vol.12
, pp. 1652-1662
-
-
Juncker, A.S.1
-
27
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen, J. D., Nielsen, H., von Heijne, G. & Brunak, S. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340 783-795 (2004).
-
(2004)
J. Mol. Biol
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
von Heijne, G.3
Brunak, S.4
-
28
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
Sonnhammer, E. L. L., von Heijne, G. & Krogh, A. A hidden Markov model for predicting transmembrane helices in protein sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol. 6, 175-182 (1998).
-
(1998)
Proc. Int. Conf. Intell. Syst. Mol. Biol
, vol.6
, pp. 175-182
-
-
Sonnhammer, E.L.L.1
von Heijne, G.2
Krogh, A.3
-
29
-
-
0028211273
-
A model recognition approach to the prediction of all-helical membrane protein structure and topology
-
Jones, D. T., Taylor, W. R. & Thornton, J. M. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry 33, 3038-3049 (1994).
-
(1994)
Biochemistry
, vol.33
, pp. 3038-3049
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
30
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
31
-
-
0043163718
-
Protein families and TRIBES in genome sequence space
-
Enright, A. J., Kunin, V. & Ouzounis, C. A. Protein families and TRIBES in genome sequence space. Nucleic Acids Res. 31, 4632-4638 (2003).
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4632-4638
-
-
Enright, A.J.1
Kunin, V.2
Ouzounis, C.A.3
-
32
-
-
34547130575
-
Exploring microbial genome sequences to identify protein families on the Grid
-
Sun, Y. et al. Exploring microbial genome sequences to identify protein families on the Grid. IEEE Trans. Inf. Technol. Biomed., 11 (2007).
-
(2007)
IEEE Trans. Inf. Technol. Biomed
, vol.11
-
-
Sun, Y.1
-
34
-
-
39149124148
-
e-Fungi: A data resource for comparative analysis of fungal genomes
-
Hedeler, C. et al. e-Fungi: A data resource for comparative analysis of fungal genomes. BMC Genomics 8, 426 (2007).
-
(2007)
BMC Genomics
, vol.8
, pp. 426
-
-
Hedeler, C.1
-
35
-
-
38549140066
-
xBASE2: A comprehensive resource for comparative bacterial genomics
-
Chaudhuri, R. R. et al. xBASE2: A comprehensive resource for comparative bacterial genomics. Nucleic Acids Res. 36, D543-D546 (2008).
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Chaudhuri, R.R.1
-
36
-
-
30344472734
-
Gnare: Automated system for high-throughput genome analysis with Grid computational backend
-
Sulakhe, D. et al. Gnare: Automated system for high-throughput genome analysis with Grid computational backend. J. Clin. Monit. Comput. 19, 361-369 (2005).
-
(2005)
J. Clin. Monit. Comput
, vol.19
, pp. 361-369
-
-
Sulakhe, D.1
-
37
-
-
41549137019
-
Interoperability of GADU in using heterogeneous grid resources for bioinformatics applications
-
Sulakhe, D., Rodriguez, A., Wilde, M., Foster, I. A. & Maltsev, N. A. Interoperability of GADU in using heterogeneous grid resources for bioinformatics applications. IEEE Trans. Inf. Technol. Biomed. 12, 241-246 (2008).
-
(2008)
IEEE Trans. Inf. Technol. Biomed
, vol.12
, pp. 241-246
-
-
Sulakhe, D.1
Rodriguez, A.2
Wilde, M.3
Foster, I.A.4
Maltsev, N.A.5
-
38
-
-
33947215475
-
CAMERA: A community resource for metagenomics
-
Seshadri, R., Kravitz, S. A., Smarr, L., Gilna, P. & Frazier, M. CAMERA: a community resource for metagenomics. PLoS Biol. 5, e75 (2007).
-
(2007)
PLoS Biol
, vol.5
-
-
Seshadri, R.1
Kravitz, S.A.2
Smarr, L.3
Gilna, P.4
Frazier, M.5
-
39
-
-
33644873920
-
PUMA2-grid-based high-throughput analysis of genomes and metabolic pathways
-
Maltsev, N. A. et al. PUMA2-grid-based high-throughput analysis of genomes and metabolic pathways. Nucleic Acids Res. 34, D369-D372 (2006).
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Maltsev, N.A.1
-
41
-
-
33745619814
-
Graph-based analysis and visualization of experimental results with ONDEX
-
Kohler, J. et al. Graph-based analysis and visualization of experimental results with ONDEX. Bioinformatics 22, 1383-1390 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 1383-1390
-
-
Kohler, J.1
-
42
-
-
35348908966
-
Bacterial protein secretion through the translocase nanomachine
-
Papanikou, E., Karamanou, S. & Economou, A. Bacterial protein secretion through the translocase nanomachine. Nature Rev. Microbiol. 5 839-851 (2007).
-
(2007)
Nature Rev. Microbiol
, vol.5
, pp. 839-851
-
-
Papanikou, E.1
Karamanou, S.2
Economou, A.3
-
43
-
-
15744405122
-
Protein targeting by the bacterial twin-arginine translocation (Tat) pathway
-
Berks, B. C., Palmer, T. & Sargent, F. Protein targeting by the bacterial twin-arginine translocation (Tat) pathway. Curr. Opin. Microbiol. 8, 174-181 (2005).
-
(2005)
Curr. Opin. Microbiol
, vol.8
, pp. 174-181
-
-
Berks, B.C.1
Palmer, T.2
Sargent, F.3
|