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Volumn 121-122, Issue , 2017, Pages 29-44

Gene editing and clonal isolation of human induced pluripotent stem cells using CRISPR/Cas9

Author keywords

Cas9; CRISPR; Gene editing; Knockin; Knockout; Pluripotent stem cells

Indexed keywords

RNA; BACTERIAL PROTEIN; CAS9 ENDONUCLEASE STREPTOCOCCUS PYOGENES; DNA; DOXYCYCLINE; ENDONUCLEASE; ENHANCED GREEN FLUORESCENT PROTEIN; GREEN FLUORESCENT PROTEIN; GUIDE RNA; LIPID; LIPOFECTAMINE;

EID: 85020198485     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2017.05.009     Document Type: Article
Times cited : (42)

References (48)
  • 1
    • 84878281982 scopus 로고    scopus 로고
    • Induced pluripotent stem cells in medicine and biology
    • Takahashi, K., Yamanaka, S., Induced pluripotent stem cells in medicine and biology. Development 140 (2013), 2457–2461, 10.1242/dev.092551.
    • (2013) Development , vol.140 , pp. 2457-2461
    • Takahashi, K.1    Yamanaka, S.2
  • 2
    • 84906319803 scopus 로고    scopus 로고
    • Investigating human disease using stem cell models
    • Sterneckert, J.L., Reinhardt, P., Scholer, H.R., Investigating human disease using stem cell models. Nat. Rev. Genet. 15 (2014), 625–639, 10.1038/nrg3764.
    • (2014) Nat. Rev. Genet. , vol.15 , pp. 625-639
    • Sterneckert, J.L.1    Reinhardt, P.2    Scholer, H.R.3
  • 3
    • 84959566309 scopus 로고    scopus 로고
    • A decade of transcription factor-mediated reprogramming to pluripotency
    • Takahashi, K., Yamanaka, S., A decade of transcription factor-mediated reprogramming to pluripotency. Nat. Rev. Mol. Cell Biol. 17 (2016), 183–193, 10.1038/nrm.2016.8.
    • (2016) Nat. Rev. Mol. Cell Biol. , vol.17 , pp. 183-193
    • Takahashi, K.1    Yamanaka, S.2
  • 4
    • 84995684992 scopus 로고    scopus 로고
    • Neural subtype specification from human pluripotent stem cells
    • Tao, Y., Zhang, S.-C., Neural subtype specification from human pluripotent stem cells. Cell Stem Cell. 19 (2016), 573–586, 10.1016/j.stem.2016.10.015.
    • (2016) Cell Stem Cell. , vol.19 , pp. 573-586
    • Tao, Y.1    Zhang, S.-C.2
  • 5
    • 84873821513 scopus 로고    scopus 로고
    • Induced pluripotent stem cell–derived cardiomyocytes in studies of inherited arrhythmias
    • Priori, S.G., Napolitano, C., Di Pasquale, E., Condorelli, G., Induced pluripotent stem cell–derived cardiomyocytes in studies of inherited arrhythmias. J. Clin. Invest. 123 (2013), 84–91, 10.1172/JCI62838.
    • (2013) J. Clin. Invest. , vol.123 , pp. 84-91
    • Priori, S.G.1    Napolitano, C.2    Di Pasquale, E.3    Condorelli, G.4
  • 6
    • 84966930890 scopus 로고    scopus 로고
    • Induced pluripotent stem cells meet genome editing
    • Hockemeyer, D., Jaenisch, R., Induced pluripotent stem cells meet genome editing. Cell Stem Cell. 18 (2016), 573–586, 10.1016/j.stem.2016.04.013.
    • (2016) Cell Stem Cell. , vol.18 , pp. 573-586
    • Hockemeyer, D.1    Jaenisch, R.2
  • 7
    • 84948760948 scopus 로고    scopus 로고
    • From genomics to gene therapy: induced pluripotent stem cells meet genome editing
    • Hotta, A., Yamanaka, S., From genomics to gene therapy: induced pluripotent stem cells meet genome editing. Annu. Rev. Genet. 49 (2015), 47–70, 10.1146/annurev-genet-112414-054926.
    • (2015) Annu. Rev. Genet. , vol.49 , pp. 47-70
    • Hotta, A.1    Yamanaka, S.2
  • 8
    • 84856405512 scopus 로고    scopus 로고
    • The mystery of missing heritability: Genetic interactions create phantom heritability
    • Zuk, O., Hechter, E., Sunyaev, S.R., Lander, E.S., The mystery of missing heritability: Genetic interactions create phantom heritability. Proc. Natl. Acad. Sci. 109 (2012), 1193–1198, 10.1073/pnas.1119675109.
    • (2012) Proc. Natl. Acad. Sci. , vol.109 , pp. 1193-1198
    • Zuk, O.1    Hechter, E.2    Sunyaev, S.R.3    Lander, E.S.4
  • 9
    • 79960642108 scopus 로고    scopus 로고
    • Molecular mechanisms of epistasis within and between genes
    • Lehner, B., Molecular mechanisms of epistasis within and between genes. Trends Genet. 27 (2011), 323–331, 10.1016/j.tig.2011.05.007.
    • (2011) Trends Genet. , vol.27 , pp. 323-331
    • Lehner, B.1
  • 10
    • 84929666410 scopus 로고    scopus 로고
    • Expanding the Biologist's Toolkit with CRISPR-Cas9
    • Sternberg, S.H., Doudna, J.A., Expanding the Biologist's Toolkit with CRISPR-Cas9. Mol. Cell. 58 (2015), 568–574, 10.1016/j.molcel.2015.02.032.
    • (2015) Mol. Cell. , vol.58 , pp. 568-574
    • Sternberg, S.H.1    Doudna, J.A.2
  • 11
    • 84875963894 scopus 로고    scopus 로고
    • Enhanced efficiency of human pluripotent stem cell genome editing through replacing TALENs with CRISPRs
    • Ding, Q., Regan, S.N., Xia, Y., Oostrom, L.A., Cowan, C.A., Musunuru, K., Enhanced efficiency of human pluripotent stem cell genome editing through replacing TALENs with CRISPRs. Cell Stem Cell. 12 (2013), 393–394, 10.1016/j.stem.2013.03.006.
    • (2013) Cell Stem Cell. , vol.12 , pp. 393-394
    • Ding, Q.1    Regan, S.N.2    Xia, Y.3    Oostrom, L.A.4    Cowan, C.A.5    Musunuru, K.6
  • 12
    • 84913600795 scopus 로고    scopus 로고
    • Genomic Editing Tools to Model Human Diseases with Isogenic Pluripotent Stem Cells
    • Kim, H.S., Bernitz, J.M., Lee, D.-F., Lemischka, I.R., Genomic Editing Tools to Model Human Diseases with Isogenic Pluripotent Stem Cells. Stem Cells Dev. 23 (2014), 2673–2686, 10.1089/scd.2014.0167.
    • (2014) Stem Cells Dev. , vol.23 , pp. 2673-2686
    • Kim, H.S.1    Bernitz, J.M.2    Lee, D.-F.3    Lemischka, I.R.4
  • 15
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber, M.R., The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu. Rev. Biochem. 79 (2010), 181–211, 10.1146/annurev.biochem.052308.093131.
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 16
    • 50649100744 scopus 로고    scopus 로고
    • Mechanism of eukaryotic homologous recombination
    • San Filippo, J., Sung, P., Klein, H., Mechanism of eukaryotic homologous recombination. Annu. Rev. Biochem. 77 (2008), 229–257, 10.1146/annurev.biochem.77.061306.125255.
    • (2008) Annu. Rev. Biochem. , vol.77 , pp. 229-257
    • San Filippo, J.1    Sung, P.2    Klein, H.3
  • 17
    • 78149425175 scopus 로고    scopus 로고
    • Regulation of Homologous Recombination in Eukaryotes
    • Heyer, W.-D., Ehmsen, K.T., Liu, J., Regulation of Homologous Recombination in Eukaryotes. Annu. Rev. Genet. 44 (2010), 113–139, 10.1146/annurev-genet-051710-150955.
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 113-139
    • Heyer, W.-D.1    Ehmsen, K.T.2    Liu, J.3
  • 18
    • 24944583478 scopus 로고    scopus 로고
    • Targeted modification of mammalian genomes
    • Sorrell, D.A., Kolb, A.F., Targeted modification of mammalian genomes. Biotechnol. Adv. 23 (2005), 431–469, 10.1016/j.biotechadv.2005.03.003.
    • (2005) Biotechnol. Adv. , vol.23 , pp. 431-469
    • Sorrell, D.A.1    Kolb, A.F.2
  • 19
    • 84905905141 scopus 로고    scopus 로고
    • An iCRISPR platform for rapid, multiplexable, and inducible genome editing in human pluripotent stem cells
    • González, F., Zhu, Z., Shi, Z.D., Lelli, K., Verma, N., Li, Q.V., Huangfu, D., An iCRISPR platform for rapid, multiplexable, and inducible genome editing in human pluripotent stem cells. Cell Stem Cell. 15 (2014), 215–226, 10.1016/j.stem.2014.05.018.
    • (2014) Cell Stem Cell. , vol.15 , pp. 215-226
    • González, F.1    Zhu, Z.2    Shi, Z.D.3    Lelli, K.4    Verma, N.5    Li, Q.V.6    Huangfu, D.7
  • 21
    • 84961219527 scopus 로고    scopus 로고
    • Precise correction of disease mutations in induced pluripotent stem cells derived from patients with limb girdle muscular dystrophy
    • Turan, S., Farruggio, A.P., Srifa, W., Day, J.W., Calos, M.P., Precise correction of disease mutations in induced pluripotent stem cells derived from patients with limb girdle muscular dystrophy. Mol. Ther. 24 (2016), 685–696, 10.1038/mt.2016.40.
    • (2016) Mol. Ther. , vol.24 , pp. 685-696
    • Turan, S.1    Farruggio, A.P.2    Srifa, W.3    Day, J.W.4    Calos, M.P.5
  • 22
    • 84903729497 scopus 로고    scopus 로고
    • Seamless modification of wild-type induced pluripotent stem cells to the natural CCR5Δ32 mutation confers resistance to HIV infection
    • Ye, L., Wang, J., Beyer, A.I., Teque, F., Cradick, T.J., Qi, Z., Chang, J.C., Bao, G., Muench, M.O., Yu, J., Levy, J.A., Kan, Y.W., Seamless modification of wild-type induced pluripotent stem cells to the natural CCR5Δ32 mutation confers resistance to HIV infection. Proc. Natl. Acad. Sci. 111 (2014), 9591–9596, 10.1073/pnas.1407473111.
    • (2014) Proc. Natl. Acad. Sci. , vol.111 , pp. 9591-9596
    • Ye, L.1    Wang, J.2    Beyer, A.I.3    Teque, F.4    Cradick, T.J.5    Qi, Z.6    Chang, J.C.7    Bao, G.8    Muench, M.O.9    Yu, J.10    Levy, J.A.11    Kan, Y.W.12
  • 23
    • 84929276488 scopus 로고    scopus 로고
    • Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus
    • Merkle, F.T., Neuhausser, W.M., Santos, D., Valen, E., Gagnon, J.A., Maas, K., Sandoe, J., Schier, A.F., Eggan, K., Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus. Cell Rep. 11 (2015), 875–883, 10.1016/j.celrep.2015.04.007.
    • (2015) Cell Rep. , vol.11 , pp. 875-883
    • Merkle, F.T.1    Neuhausser, W.M.2    Santos, D.3    Valen, E.4    Gagnon, J.A.5    Maas, K.6    Sandoe, J.7    Schier, A.F.8    Eggan, K.9
  • 26
    • 84964253170 scopus 로고    scopus 로고
    • Defining and improving the genome-wide specificities of CRISPR–Cas9 nucleases
    • Tsai, S.Q., Joung, J.K., Defining and improving the genome-wide specificities of CRISPR–Cas9 nucleases. Nat. Rev. Genet. 17 (2016), 300–312, 10.1038/nrg.2016.28.
    • (2016) Nat. Rev. Genet. , vol.17 , pp. 300-312
    • Tsai, S.Q.1    Joung, J.K.2
  • 27
    • 84904010334 scopus 로고    scopus 로고
    • Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing
    • Veres, A., Gosis, B.S., Ding, Q., Collins, R., Ragavendran, A., Brand, H., Erdin, S., Cowan, C.A., Talkowski, M.E., Musunuru, K., Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing. Cell Stem Cell. 15 (2014), 27–30, 10.1016/j.stem.2014.04.020.
    • (2014) Cell Stem Cell. , vol.15 , pp. 27-30
    • Veres, A.1    Gosis, B.S.2    Ding, Q.3    Collins, R.4    Ragavendran, A.5    Brand, H.6    Erdin, S.7    Cowan, C.A.8    Talkowski, M.E.9    Musunuru, K.10
  • 30
    • 84952943845 scopus 로고    scopus 로고
    • Rationally engineered Cas9 nucleases with improved specificity
    • Slaymaker, I.M., Gao, L., Zetsche, B., Scott, D.A., Yan, W.X., Zhang, F., Rationally engineered Cas9 nucleases with improved specificity. Science (80-.) 351 (2016), 84–88, 10.1126/science.aad5227.
    • (2016) Science (80-.) , vol.351 , pp. 84-88
    • Slaymaker, I.M.1    Gao, L.2    Zetsche, B.3    Scott, D.A.4    Yan, W.X.5    Zhang, F.6
  • 31
    • 84963941043 scopus 로고    scopus 로고
    • High-fidelity CRISPR–Cas9 nucleases with no detectable genome-wide off-target effects
    • Kleinstiver, B.P., Pattanayak, V., Prew, M.S., Tsai, S.Q., Nguyen, N.T., Zheng, Z., Keith Joung, J., High-fidelity CRISPR–Cas9 nucleases with no detectable genome-wide off-target effects. Nature 529 (2016), 490–495, 10.1038/nature16526.
    • (2016) Nature , vol.529 , pp. 490-495
    • Kleinstiver, B.P.1    Pattanayak, V.2    Prew, M.S.3    Tsai, S.Q.4    Nguyen, N.T.5    Zheng, Z.6    Keith Joung, J.7
  • 32
    • 85016110800 scopus 로고    scopus 로고
    • The human-induced pluripotent stem cell initiative—data resources for cellular genetics
    • Streeter, I., Harrison, P.W., Faulconbridge, A., Flicek, P., Parkinson, H., Clarke, L., The human-induced pluripotent stem cell initiative—data resources for cellular genetics. Nucleic Acids Res. 45 (2017), D691–D697, 10.1093/nar/gkw928.
    • (2017) Nucleic Acids Res. , vol.45 , pp. D691-D697
    • Streeter, I.1    Harrison, P.W.2    Faulconbridge, A.3    Flicek, P.4    Parkinson, H.5    Clarke, L.6
  • 33
    • 84946567748 scopus 로고    scopus 로고
    • A novel two-step genome editing strategy with CRISPR-Cas9 provides new insights into telomerase action and TERT gene expression
    • Xi, L., Schmidt, J.C., Zaug, A.J., Ascarrunz, D.R., Cech, T.R., A novel two-step genome editing strategy with CRISPR-Cas9 provides new insights into telomerase action and TERT gene expression. Genome Biol., 16, 2015, 231, 10.1186/s13059-015-0791-1.
    • (2015) Genome Biol. , vol.16 , pp. 231
    • Xi, L.1    Schmidt, J.C.2    Zaug, A.J.3    Ascarrunz, D.R.4    Cech, T.R.5
  • 36
    • 85006973031 scopus 로고    scopus 로고
    • Illegitimate translation causes unexpected gene expression from on-target out-of-frame alleles created by CRISPR-Cas9
    • Makino, S., Fukumura, R., Gondo, Y., Illegitimate translation causes unexpected gene expression from on-target out-of-frame alleles created by CRISPR-Cas9. Sci. Rep., 6, 2016, 39608, 10.1038/srep39608.
    • (2016) Sci. Rep. , vol.6 , pp. 39608
    • Makino, S.1    Fukumura, R.2    Gondo, Y.3
  • 37
    • 0030627982 scopus 로고    scopus 로고
    • Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis
    • Pedersen, A.G., Nielsen, H., Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5 (1997), 226–233.
    • (1997) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.5 , pp. 226-233
    • Pedersen, A.G.1    Nielsen, H.2
  • 38
    • 84992608962 scopus 로고    scopus 로고
    • Modeling and correction of structural variations in patient-derived iPSCs using CRISPR/Cas9
    • Park, C.-Y., Sung, J.J., Choi, S.-H., Lee, D.R., Park, I.-H., Kim, D.-W., Modeling and correction of structural variations in patient-derived iPSCs using CRISPR/Cas9. Nat. Protoc. 11 (2016), 2154–2169, 10.1038/nprot.2016.129.
    • (2016) Nat. Protoc. , vol.11 , pp. 2154-2169
    • Park, C.-Y.1    Sung, J.J.2    Choi, S.-H.3    Lee, D.R.4    Park, I.-H.5    Kim, D.-W.6
  • 42
    • 84960911917 scopus 로고    scopus 로고
    • Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA
    • Richardson, C.D., Ray, G.J., DeWitt, M.A., Curie, G.L., Corn, J.E., Enhancing homology-directed genome editing by catalytically active and inactive CRISPR-Cas9 using asymmetric donor DNA. Nat. Biotechnol. 34 (2016), 339–344, 10.1038/nbt.3481.
    • (2016) Nat. Biotechnol. , vol.34 , pp. 339-344
    • Richardson, C.D.1    Ray, G.J.2    DeWitt, M.A.3    Curie, G.L.4    Corn, J.E.5
  • 44
    • 85015187315 scopus 로고    scopus 로고
    • GFP to BFP conversion: a versatile assay for the quantification of CRISPR/Cas9-mediated genome editing
    • Glaser, A., McColl, B., Vadolas, J., GFP to BFP conversion: a versatile assay for the quantification of CRISPR/Cas9-mediated genome editing. Mol. Ther. Acids., 5, 2016, e334, 10.1038/mtna.2016.48.
    • (2016) Mol. Ther. Acids. , vol.5 , pp. e334
    • Glaser, A.1    McColl, B.2    Vadolas, J.3
  • 45
    • 0012254102 scopus 로고    scopus 로고
    • Gene targeting, principles, and practice in mammalian cells
    • A. Joyner second ed. Oxford University Press Oxford
    • Hasty, P., Abuin, A., Bradley, A., Gene targeting, principles, and practice in mammalian cells. Joyner, A., (eds.) Gene Target. A Pract. Approach, second ed., 2000, Oxford University Press, Oxford, 1–35.
    • (2000) Gene Target. A Pract. Approach , pp. 1-35
    • Hasty, P.1    Abuin, A.2    Bradley, A.3
  • 46
    • 84874631619 scopus 로고    scopus 로고
    • Design and Generation of Gene-Targeting Vectors
    • John Wiley & Sons, Inc. Hoboken, NJ, USA
    • Wefers, B., Wurst, W., Kühn, R., Design and Generation of Gene-Targeting Vectors. Curr. Protoc. Mouse Biol., 2011, John Wiley & Sons, Inc., Hoboken, NJ, USA, 199–211, 10.1002/9780470942390.mo100179.
    • (2011) Curr. Protoc. Mouse Biol. , pp. 199-211
    • Wefers, B.1    Wurst, W.2    Kühn, R.3
  • 47
    • 84925317237 scopus 로고    scopus 로고
    • Derek Peters, Chad Cowan, Kiran Musunuru, Genome editing in human pluripotent stem cells, in: StemBook, Cambridge,. doi:10.3824/stembook.1.94.1.
    • Derek Peters, Chad Cowan, Kiran Musunuru, Genome editing in human pluripotent stem cells, in: StemBook, Cambridge, 2014. doi:10.3824/stembook.1.94.1.
    • (2014)
  • 48
    • 84917725056 scopus 로고    scopus 로고
    • Easy quantitative assessment of genome editing by sequence trace decomposition
    • Brinkman, E.K., Chen, T., Amendola, M., van Steensel, B., Easy quantitative assessment of genome editing by sequence trace decomposition. Nucleic Acids Res., 42, 2014, e168, 10.1093/nar/gku936.
    • (2014) Nucleic Acids Res. , vol.42 , pp. e168
    • Brinkman, E.K.1    Chen, T.2    Amendola, M.3    van Steensel, B.4


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