Mining bacterial genomes for secondary metabolite gene clusters

Methods in Molecular Biology

Volumn 1520, Issue , 2017, Pages 23-47

  Adamek, Martina ^a,b   Spohn, Marius ^a   Stegmann, Evi ^a,b   Ziemert, Nadine ^a,b  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b German Centre for Infection Research (DZIF)   (Germany)

Author keywords

Antibiotics; antiSMASH; Biosynthesis; Cluster boundaries; Gene cluster families; Genome mining; INBEKT; Prioritization; Secondary metabolite gene cluster

Indexed keywords

AMINO ACID; CONTIG; DNA; ZINC;

AMYCOLATOPSIS; AMYCOLATOPSIS AZUREA; AMYCOLATOPSIS BALHIMYCINA; AMYCOLATOPSIS DECAPLANINA; AMYCOLATOPSIS MEDITERRANEI; AMYCOLATOPSIS ORIENTALIS; BACTERIAL GENOME; BIOSYNTHESIS; CONSENSUS SEQUENCE; DATA BASE; DNA BINDING; DNA FLANKING REGION; ENZYME SPECIFICITY; GENE CLUSTER; GENE TARGETING; GENETIC TRANSCRIPTION; GENOMICS; INDEL MUTATION; METABOLITE; MULTILOCUS SEQUENCE TYPING; NEXT GENERATION SEQUENCING; NONHUMAN; NUTRIENT; OPEN READING FRAME; OXIDATIVE STRESS; PHYLOGENETIC TREE; PROTEIN PROCESSING; STARVATION; STREPTOMYCES COELICOLOR; DATA MINING; GENETICS; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PROCEDURES; SECONDARY METABOLISM;

BASE SEQUENCE; DATA MINING; GENOME, BACTERIAL; MULTIGENE FAMILY; SECONDARY METABOLISM;

EID: 84996615290     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-6634-9_2     Document Type: Chapter

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