Improved microbial gene identification with GLIMMER

Nucleic Acids Research

Volumn 27, Issue 23, 1999, Pages 4636-4641

  Delcher, Arthur L ^a,b   Harmon, Douglas ^a   Kasif, Simon ^c   White, Owen ^d   Salzberg, Steven L ^d  

^a LOYOLA UNIVERSITY MARYLAND   (United States)

^b CELERA GENOMICS   (United States)

^c 1120 Science and Engineering Offices   (United States)

^d J CRAIG VENTER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BACILLUS SUBTILIS; COMPUTER PROGRAM; DATA BASE; GENE ASSIGNMENT; GENE ISOLATION; GENOME; HAEMOPHILUS INFLUENZAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

BACILLUS SUBTILIS; HAEMOPHILUS INFLUENZAE;

EID: 0033485517     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.23.4636     Document Type: Article

References (23)

1. Salzberg, S., Delcher, A., Kasif, S. and While, O. (1998) Nucleic Acids Res., 26, 544-548.
2. Fraser, C.M., Casjens, S., Huang, W., Sutton, G., Clayton, R., Lathigra, R., White, O., Ketchum, K., Dodson, R., Hickey, E. et al (1997) Nature, 390, 580-586.
3. Fraser, C.M., Norris, S.J., Weinstock, G.M., While, O., Sutton, G., Clayton, R., Dodson, R., Gwinn, M., Hickey, E., Ketchum, K.A. et al. (1998) Science, 281, 375-388.
4. Stephens, R., Kalman, S., Lammel, C., Fan, J., Marathe, R., Aravind, L., Mitchell, W., Olinger, L., Tatusov, R., Zhao, Q. et al. (1998) Science, 282, 754-759.
5. Nelson, K.E., Clayton, R.A., Gill, S.R., Gwinn, M.L., Dodson, R.J., Haft, D.H., Hickey, E.K., Peterson, J.D., Nelson, W.C., Ketchum, K.A. et al. (1999) Nature, 399, 323-329.
6. Borodovsky, M. and Mcininch, J.D. (1993) Comput. Chem., 17, 123-133.
7. Borodovsky, M., McIninch, J., Koonin, E., Rudd, K., Medigue, C. and Danchin, A. (1995) Nucleic Acids Res., 23, 3554-3562.
8. Quintan, J.R. (1993) Programs for Machine Learning. Kaufmann Publishers, San Mateo, CA.
9. Buntine, W. (1992) Stat. Comput., 2, 63-73.
10. Helmbold, D.P, and Schapire, R.E. (1997) Machine Learning, 27, 51-68.
11. Willems, F.M.J., Shlarskov, Y.M. and Tjalkens, T.J. (1995) IEEE Trans. Inf. Theory, 4, 663-664.
12. Burge, C. (1998) In Salzberg, S., Searls, D. and Kasif, S. (eds), Computational Methods in Molecular Biology, New Comprehensive Biochemistry. Elsevier Science B.V., Amsterdam, pp. 129-164.
13. Salzberg, S., Delcher, A., Fasman, K. and Henderson, J. (1998) J. Comput. Biol., 5, 667-680.
14. Fleischmann, R.D., Adams, M., White, O., Clayton, R., Kirkness, E., Kerlavage, A., Bult, C., Tomb, J.-F., Dougherty, B., Merrick, J. et al. (1995) Science, 269, 496-512.
15. Fraser, C.M., Gocayne, J., White, O., Adams, M., Clayton, R., Fleischmann, R., Bult, C., Kerlavage, A., Sutton, G., Kelley, J. et al. (1995) Science, 270, 397-403.
16. Bult, C.J., White, O., Olsen, G.I, Zhou, L, Fleischmann, R.D., Sutton, G.G., Blake, J.A., FitzGerald, L.M., Clayton, R.A., Gocayne, J.D. et al. (1996) Science, 273, 1058-1073.
17. Tomb, J.-F., White, O., Kerlavage, A.R., Clayton, R., Sutton, G., Fleischmann, R., Ketchum, K., Klenk, H., Gill, S., Dougherty, B. et al. (1997) Nature, 388, 539-547.
18. Blattner, F.R., Plunkett, G., Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F. et al. (1997) Science, 277, 1453-1462.
19. Kunst, F., Ogasawara, N., Moszer, I., Albertini, A.M., Alloni, G., Azevedo, V., Bertero, M.G., Bessieres, P., Bolotin, A., Borchert, S. et al. (1997) Nature, 390, 249-256.
20. Klenk, H.P., Clayton, R.A., Tomb, J.-F., White, O., Nelson, K.E., Ketchum, K.A., Dodson, R.J., Gwinn, M., Hickey, E.K., Peterson, J.D. et al. (1997) Nature, 390, 364-370.
21. Cole, S.T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S.V., Eiglmeier, K., Gas, S., Barry, C.E. et al. (1998) Nature, 393, 537-544.
22. Salzberg, S.L., Pertea, M., Delcher, A.L., Gardner, M.J. and Tettelin, H. (1999) Genomics, 59, 24-31.
23. Altschul, S., Gish, W., Miller, W., Myers, E. and Lipman, D. (1990) J. Mol. Biol., 215, 403-410.