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Volumn 37, Issue SUPPL. 2, 2009, Pages

MEME Suite: Tools for motif discovery and searching

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EID: 67849122320     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp335     Document Type: Article
Times cited : (7516)

References (16)
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    • Bailey,T.L., Williams,N., Misleh,C. and Li,W.W. (2006) Meme: Discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res., 34, W369-W373.
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    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4
  • 2
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    • Fitting a mixture model by expectation-maximization to discover motifs in biopolymers
    • Altman,R, Brutlag,D, Karp,P, Lathrop,R. and Searls,D, eds, AAAI Press, Menlo Park, CA, pp
    • Bailey,T.L. and Elkan,C.P. (1994) Fitting a mixture model by expectation-maximization to discover motifs in biopolymers. In Altman,R., Brutlag,D., Karp,P., Lathrop,R. and Searls,D. (eds), Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, AAAI Press, Menlo Park, CA, pp. 28-36.
    • (1994) Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology , pp. 28-36
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  • 3
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    • Frith,M.C., Saunders,N.F.W., Kobe,B. and Bailey,T.L. (2008) Discovering sequence motifs with arbitrary insertions and deletions. PLoS Comput. Biol., 4, e1000071.
    • Frith,M.C., Saunders,N.F.W., Kobe,B. and Bailey,T.L. (2008) Discovering sequence motifs with arbitrary insertions and deletions. PLoS Comput. Biol., 4, e1000071.
  • 5
    • 0031877016 scopus 로고    scopus 로고
    • Combining evidence using p-values: Application to sequence homology searches
    • Bailey,T.L. and Gribskov,M. (1998) Combining evidence using p-values: application to sequence homology searches. Bioinformatics, 14 48-54.
    • (1998) Bioinformatics , vol.14 , pp. 48-54
    • Bailey, T.L.1    Gribskov, M.2
  • 6
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    • Associating transcription factor-binding site motifs with target go terms and target genes
    • Bodén,M. and Bailey,T.L. (2008) Associating transcription factor-binding site motifs with target go terms and target genes. Nucleic Acids Res., 36, 4108-4117.
    • (2008) Nucleic Acids Res , vol.36 , pp. 4108-4117
    • Bodén, M.1    Bailey, T.L.2
  • 8
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    • Discovering sequence motifs
    • Bailey,T.L. (2007) Discovering sequence motifs. Methods Mol. Biol. 395, 271-292.
    • (2007) Methods Mol. Biol , vol.395 , pp. 271-292
    • Bailey, T.L.1
  • 11
    • 0028186408 scopus 로고
    • Searching for motifs in nucleic acid sequences
    • Staden,R. (1994) Searching for motifs in nucleic acid sequences. Methods Mol. Biol., 25, 93-102.
    • (1994) Methods Mol. Biol , vol.25 , pp. 93-102
    • Staden, R.1
  • 12
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey,J.D. (2002) A direct approach to false discovery rates. J. R. Stat. Soc., 64, 479-498.
    • (2002) J. R. Stat. Soc , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 13
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    • Score distributions for simultaneous matching to multiple motifs
    • Bailey,T.L. and Gribskov,M. (1997) Score distributions for simultaneous matching to multiple motifs. J. Comput. Biol., 4, 45-59.
    • (1997) J. Comput. Biol , vol.4 , pp. 45-59
    • Bailey, T.L.1    Gribskov, M.2
  • 14
    • 14844293471 scopus 로고    scopus 로고
    • A component-based software environment for visualizing large macromolecular assemblies
    • Sanner,M.F. (2005) A component-based software environment for visualizing large macromolecular assemblies. Structure, 13, 447-462.
    • (2005) Structure , vol.13 , pp. 447-462
    • Sanner, M.F.1
  • 16
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    • Cheminformatics analysis and learning in a data pipelining environment
    • Hassan,M., Brown,R.D., Varma-O'Brien,S. and Rogers,D. (2006) Cheminformatics analysis and learning in a data pipelining environment. Mol. Div., 10, 283-299.
    • (2006) Mol. Div , vol.10 , pp. 283-299
    • Hassan, M.1    Brown, R.D.2    Varma-O'Brien, S.3    Rogers, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.