-
1
-
-
33644520519
-
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide
-
10.1093/nar/gkj145, 1347507, 16381880
-
Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC. The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. Nucleic Acids Res 2006, 34:D332-334. 10.1093/nar/gkj145, 1347507, 16381880.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Liolios, K.1
Tavernarakis, N.2
Hugenholtz, P.3
Kyrpides, N.C.4
-
2
-
-
23144442407
-
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies
-
10.1093/nar/gki356, 1160117, 15980536
-
van Hijum SA, Zomer AL, Kuipers OP, Kok J. Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res 2005, 33:W560-566. 10.1093/nar/gki356, 1160117, 15980536.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
van Hijum, S.A.1
Zomer, A.L.2
Kuipers, O.P.3
Kok, J.4
-
3
-
-
70249111111
-
PGA4genomics for comparative genome assembly based on genetic algorithm optimization
-
10.1016/j.ygeno.2009.06.006, 19573591
-
Zhao F, Hou H, Bao Q, Wu J. PGA4genomics for comparative genome assembly based on genetic algorithm optimization. Genomics 2009, 94:284-286. 10.1016/j.ygeno.2009.06.006, 19573591.
-
(2009)
Genomics
, vol.94
, pp. 284-286
-
-
Zhao, F.1
Hou, H.2
Bao, Q.3
Wu, J.4
-
4
-
-
34547852218
-
OSLay: optimal syntenic layout of unfinished assemblies
-
10.1093/bioinformatics/btm153, 17463020
-
Richter DC, Schuster SC, Huson DH. OSLay: optimal syntenic layout of unfinished assemblies. Bioinformatics 2007, 23:1573-1579. 10.1093/bioinformatics/btm153, 17463020.
-
(2007)
Bioinformatics
, vol.23
, pp. 1573-1579
-
-
Richter, D.C.1
Schuster, S.C.2
Huson, D.H.3
-
5
-
-
67650735586
-
ABACAS: algorithm-based automatic contiguation of assembled sequences
-
10.1093/bioinformatics/btp347, 2712343, 19497936
-
Assefa S, Keane TM, Otto TD, Newbold C, Berriman M. ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinformatics 2009, 25:1968-1969. 10.1093/bioinformatics/btp347, 2712343, 19497936.
-
(2009)
Bioinformatics
, vol.25
, pp. 1968-1969
-
-
Assefa, S.1
Keane, T.M.2
Otto, T.D.3
Newbold, C.4
Berriman, M.5
-
6
-
-
77955032305
-
A computational genomics pipeline for prokaryotic sequencing projects
-
Kislyuk AO, Katz LS, Agrawal S, Hagen MS, Conley AB, Jayaraman P, Nelakuditi V, Humphrey JC, Sammons SA, Govil D, et al. A computational genomics pipeline for prokaryotic sequencing projects. Bioinformatics 26:1819-1826.
-
Bioinformatics
, vol.26
, pp. 1819-1826
-
-
Kislyuk, A.O.1
Katz, L.S.2
Agrawal, S.3
Hagen, M.S.4
Conley, A.B.5
Jayaraman, P.6
Nelakuditi, V.7
Humphrey, J.C.8
Sammons, S.A.9
Govil, D.10
-
7
-
-
56649123520
-
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
-
10.1093/bioinformatics/btn529, 2606163,2606163, 18845581
-
Carver T, Berriman M, Tivey A, Patel C, Bohme U, Barrell BG, Parkhill J, Rajandream MA. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 2008, 24:2672-2676. 10.1093/bioinformatics/btn529, 2606163,2606163, 18845581.
-
(2008)
Bioinformatics
, vol.24
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
Barrell, B.G.6
Parkhill, J.7
Rajandream, M.A.8
-
8
-
-
74049108922
-
BLAST+: architecture and applications
-
10.1186/1471-2105-10-421, 2803857, 20003500
-
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BLAST+: architecture and applications. BMC Bioinformatics 2009, 10:421. 10.1186/1471-2105-10-421, 2803857, 20003500.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
9
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
10
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
10.1186/gb-2004-5-2-r12, 395750, 14759262
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL. Versatile and open software for comparing large genomes. Genome Biol 2004, 5:R12. 10.1186/gb-2004-5-2-r12, 395750, 14759262.
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
11
-
-
34447321852
-
Enhancements and modifications of primer design program Primer3
-
10.1093/bioinformatics/btm091, 17379693
-
Koressaar T, Remm M. Enhancements and modifications of primer design program Primer3. Bioinformatics 2007, 23:1289-1291. 10.1093/bioinformatics/btm091, 17379693.
-
(2007)
Bioinformatics
, vol.23
, pp. 1289-1291
-
-
Koressaar, T.1
Remm, M.2
-
12
-
-
70349565550
-
Brucella microti: the genome sequence of an emerging pathogen
-
10.1186/1471-2164-10-352, 2743711, 19653890
-
Audic S, Lescot M, Claverie JM, Scholz HC. Brucella microti: the genome sequence of an emerging pathogen. BMC Genomics 2009, 10:352. 10.1186/1471-2164-10-352, 2743711, 19653890.
-
(2009)
BMC Genomics
, vol.10
, pp. 352
-
-
Audic, S.1
Lescot, M.2
Claverie, J.M.3
Scholz, H.C.4
-
13
-
-
67650751869
-
Fluoroquinolone-resistant Brucella melitensis mutants obtained in vitro
-
10.1016/j.ijantimicag.2008.12.013, 19243922
-
Lazaro FG, Rodriguez-Tarazona RE, Garcia-Rodriguez JA, Munoz-Bellido JL. Fluoroquinolone-resistant Brucella melitensis mutants obtained in vitro. Int J Antimicrob Agents 2009, 34:252-254. 10.1016/j.ijantimicag.2008.12.013, 19243922.
-
(2009)
Int J Antimicrob Agents
, vol.34
, pp. 252-254
-
-
Lazaro, F.G.1
Rodriguez-Tarazona, R.E.2
Garcia-Rodriguez, J.A.3
Munoz-Bellido, J.L.4
-
15
-
-
33845999944
-
The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081
-
10.1371/journal.pgen.0020206, 1698947, 17173484
-
Thomson NR, Howard S, Wren BW, Holden MT, Crossman L, Challis GL, Churcher C, Mungall K, Brooks K, Chillingworth T, et al. The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet 2006, 2:e206. 10.1371/journal.pgen.0020206, 1698947, 17173484.
-
(2006)
PLoS Genet
, vol.2
-
-
Thomson, N.R.1
Howard, S.2
Wren, B.W.3
Holden, M.T.4
Crossman, L.5
Challis, G.L.6
Churcher, C.7
Mungall, K.8
Brooks, K.9
Chillingworth, T.10
-
16
-
-
77952072288
-
Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium
-
Siezen RJ, Bayjanov J, Renckens B, Wels M, van Hijum SA, Molenaar D, van Hylckama Vlieg JE. Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium. J Bacteriol 192:2649-2650.
-
J Bacteriol
, vol.192
, pp. 2649-2650
-
-
Siezen, R.J.1
Bayjanov, J.2
Renckens, B.3
Wels, M.4
van Hijum, S.A.5
Molenaar, D.6
van Hylckama Vlieg, J.E.7
-
17
-
-
0032872644
-
Low-redundancy sequencing of the entire Lactococcus lactis IL1403 genome
-
10.1023/A:1002048720611, 10532372
-
Bolotin A, Mauger S, Malarme K, Ehrlich SD, Sorokin A. Low-redundancy sequencing of the entire Lactococcus lactis IL1403 genome. Antonie Van Leeuwenhoek 1999, 76:27-76. 10.1023/A:1002048720611, 10532372.
-
(1999)
Antonie Van Leeuwenhoek
, vol.76
, pp. 27-76
-
-
Bolotin, A.1
Mauger, S.2
Malarme, K.3
Ehrlich, S.D.4
Sorokin, A.5
-
18
-
-
79955837064
-
Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti
-
10.1186/1471-2164-12-253, 3113788, 21599948
-
Galardini M, Mengoni A, Brilli M, Pini F, Fioravanti A, Lucas S, Lapidus A, Cheng J-F, Goodwin L, Pitluck S, et al. Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti . BMC Genomics 2011, 12:253. 10.1186/1471-2164-12-253, 3113788, 21599948.
-
(2011)
BMC Genomics
, vol.12
, pp. 253
-
-
Galardini, M.1
Mengoni, A.2
Brilli, M.3
Pini, F.4
Fioravanti, A.5
Lucas, S.6
Lapidus, A.7
Cheng, J.-.F.8
Goodwin, L.9
Pitluck, S.10
-
19
-
-
0035958746
-
The composite genome of the legume symbiont Sinorhizobium meliloti
-
10.1126/science.1060966, 11474104
-
Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, et al. The composite genome of the legume symbiont Sinorhizobium meliloti. Science 2001, 293:668-672. 10.1126/science.1060966, 11474104.
-
(2001)
Science
, vol.293
, pp. 668-672
-
-
Galibert, F.1
Finan, T.M.2
Long, S.R.3
Puhler, A.4
Abola, P.5
Ampe, F.6
Barloy-Hubler, F.7
Barnett, M.J.8
Becker, A.9
Boistard, P.10
-
20
-
-
65649092976
-
Biopython: freely available Python tools for computational molecular biology and bioinformatics
-
10.1093/bioinformatics/btp163, 2682512, 19304878
-
Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 2009, 25:1422-1423. 10.1093/bioinformatics/btp163, 2682512, 19304878.
-
(2009)
Bioinformatics
, vol.25
, pp. 1422-1423
-
-
Cock, P.J.1
Antao, T.2
Chang, J.T.3
Chapman, B.A.4
Cox, C.J.5
Dalke, A.6
Friedberg, I.7
Hamelryck, T.8
Kauff, F.9
Wilczynski, B.10
de Hoon, M.J.11
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