-
1
-
-
84870062242
-
Explorations of catalytic domains in nonribosomalpeptidesynthetase enzymology
-
Hur, G. H., Vickery, C. R. & Burkart, M. D. Explorations of catalytic domains in nonribosomalpeptidesynthetase enzymology.Nat. Prod.Rep.29,1074-1098(2012).
-
(2012)
Nat. Prod. Rep
, vol.29
, pp. 1074-1098
-
-
Hur, G.H.1
Vickery, C.R.2
Burkart, M.D.3
-
2
-
-
84893142381
-
Glycopeptide antibiotic biosynthesis
-
Yim, G., Thaker, M. N., Koteva, K. &Wright, G. Glycopeptide antibiotic biosynthesis. J. Antibiot. (Tokyo) 67, 31-41 (2014).
-
(2014)
J. Antibiot. (Tokyo)
, vol.67
, pp. 31-41
-
-
Yim, G.1
Thaker, M.N.2
Koteva, K.3
Wright, G.4
-
3
-
-
84925338730
-
-
The Royal Society of Chemistry
-
Cryle, M. J., Brieke, C. & Haslinger, K. in Amino Acids, Peptides and Proteins Vol. 38, 1-36 (The Royal Society of Chemistry, 2014).
-
(2014)
Amino Acids Peptides and Proteins
, vol.38
, pp. 1-36
-
-
Cryle, M.J.1
Brieke, C.2
Haslinger, K.3
-
4
-
-
21144439895
-
The biosynthesis of vancomycin-type glycopeptide antibiotics-A model for oxidative side-chain cross-linking by oxygenases coupled to the action of peptide synthetases
-
Bischoff, D. et al. The biosynthesis of vancomycin-type glycopeptide antibiotics-a model for oxidative side-chain cross-linking by oxygenases coupled to the action of peptide synthetases. ChemBioChem 6, 267-272 (2005).
-
(2005)
ChemBioChem
, vol.6
, pp. 267-272
-
-
Bischoff, D.1
-
5
-
-
0035805265
-
The biosynthesis of vancomycin-type glycopeptide antibioticsnew insights into the cyclization steps
-
Bischoff, D. et al. The biosynthesis of vancomycin-type glycopeptide antibioticsnew insights into the cyclization steps. Angew. Chem. Int. Ed. Engl. 40, 1693-1696 (2001).
-
(2001)
Angew. Chem. Int. Ed. Engl
, vol.40
, pp. 1693-1696
-
-
Bischoff, D.1
-
6
-
-
0035905507
-
The biosynthesis of vancomycin-type glycopeptide antibiotics- The order of the cyclization steps
-
Bischoff, D. et al. The biosynthesis of vancomycin-type glycopeptide antibiotics- the order of the cyclization steps. Angew. Chem. Int. Ed. Engl. 40, 4688-4691 (2001).
-
(2001)
Angew. Chem. Int. Ed. Engl
, vol.40
, pp. 4688-4691
-
-
Bischoff, D.1
-
7
-
-
0242491431
-
Newadvances in the biosynthesis of glycopeptide antibiotics of the vancomycin type from Amycolatopsis mediterranei
-
Süssmuth, R. D. et al.Newadvances in the biosynthesis of glycopeptide antibiotics of the vancomycin type from Amycolatopsis mediterranei. Angew. Chem. Int. Ed. Engl. 38, 1976-1979 (1999).
-
(1999)
Angew. Chem. Int. Ed. Engl
, vol.38
, pp. 1976-1979
-
-
Süssmuth, R.D.1
-
8
-
-
84915809650
-
Cytochrome P450 OxyBtei catalyzes the first phenolic coupling step in teicoplanin biosynthesis
-
Haslinger, K., Maximowitsch, E., Brieke, C., Koch, A.&Cryle, M. J. Cytochrome P450 OxyBtei catalyzes the first phenolic coupling step in teicoplanin biosynthesis. ChemBioChem 15, 2719-2728 (2014).
-
(2014)
ChemBioChem
, vol.15
, pp. 2719-2728
-
-
Haslinger, K.1
Maximowitsch, E.2
Brieke, C.3
Koch, A.4
Cryle, M.J.5
-
9
-
-
34249780359
-
Oxidative phenol coupling reactions catalyzed by OxyB: A cytochrome P450 from the vancomycin producing organism Implications for vancomycin biosynthesis
-
Woithe, K. et al. Oxidative phenol coupling reactions catalyzed by OxyB: a cytochrome P450 from the vancomycin producing organism. Implications for vancomycin biosynthesis. J. Am. Chem. Soc. 129, 6887-6895 (2007).
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 6887-6895
-
-
Woithe, K.1
-
10
-
-
10944269741
-
An oxidative phenol coupling reaction catalyzed by OxyB, a cytochromeP450 fromthe vancomycin-producing microorganism
-
Zerbe, K. et al. An oxidative phenol coupling reaction catalyzed by OxyB, a cytochromeP450 fromthe vancomycin-producing microorganism. Angew.Chem. Int. Ed. Engl. 43, 6709-6713 (2004).
-
(2004)
Angew.Chem. Int. Ed. Engl
, vol.43
, pp. 6709-6713
-
-
Zerbe, K.1
-
11
-
-
34548647327
-
The biosynthesis of teicoplanin-type glycopeptide antibiotics: Assignment of P450 mono-oxygenases to side chain cyclizations of glycopeptide A47934
-
Hadatsch, B. et al. The biosynthesis of teicoplanin-type glycopeptide antibiotics: assignment of P450 mono-oxygenases to side chain cyclizations of glycopeptide A47934. Chem. Biol. 14, 1078-1089 (2007).
-
(2007)
Chem. Biol
, vol.14
, pp. 1078-1089
-
-
Hadatsch, B.1
-
12
-
-
33746154920
-
Genetic analysis of the balhimycin (vancomycin-type) oxygenase genes
-
Stegmann, E. et al. Genetic analysis of the balhimycin (vancomycin-type) oxygenase genes. J. Biotechnol. 124, 640-653 (2006).
-
(2006)
J. Biotechnol
, vol.124
, pp. 640-653
-
-
Stegmann, E.1
-
13
-
-
34250710858
-
Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution
-
Rausch, C., Hoof, I., Weber, T., Wohlleben, W. & Huson, D. Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution. BMC Evol. Biol. 7, 78 (2007).
-
(2007)
BMC Evol. Biol
, vol.7
, pp. 78
-
-
Rausch, C.1
Hoof, I.2
Weber, T.3
Wohlleben, W.4
Huson, D.5
-
14
-
-
77957784833
-
Glycopeptide biosynthesis in the context of basic cellular functions
-
Stegmann, E., Frasch, H.-J. & Wohlleben, W. Glycopeptide biosynthesis in the context of basic cellular functions. Curr. Opin. Microbiol. 13, 595-602 (2010).
-
(2010)
Curr. Opin. Microbiol
, vol.13
, pp. 595-602
-
-
Stegmann, E.1
Frasch, H.-J.2
Wohlleben, W.3
-
15
-
-
84893089095
-
Prospects for new antibiotics: A molecule-centered perspective
-
Walsh, C. T. & Wencewicz, T. A. Prospects for new antibiotics: a molecule-centered perspective. J. Antibiot. (Tokyo) 67, 7-22 (2014).
-
(2014)
J. Antibiot. (Tokyo)
, vol.67
, pp. 7-22
-
-
Walsh, C.T.1
Wencewicz, T.A.2
-
16
-
-
84921716861
-
Glycopeptideantibiotics:back to the future
-
Butler, M. S. et al. Glycopeptideantibiotics:back to the future. J. Antibiot. (Tokyo)67, 631-644 (2014).
-
(2014)
J. Antibiot. (Tokyo)
, vol.67
, pp. 631-644
-
-
Butler, M.S.1
-
17
-
-
84922648459
-
Rapid access to glycopeptide antibiotic precursor peptides coupled with cytochrome P450-mediated catalysis: Towards a biomimetic synthesis of glycopeptide antibiotics
-
Brieke, C. et al.Rapid access to glycopeptide antibiotic precursor peptides coupled with cytochrome P450-mediated catalysis: towards a biomimetic synthesis of glycopeptide antibiotics Org. Biomol. Chem. http://dx.doi/org/10.1039/ C4OB02452D (2014).
-
(2014)
Org. Biomol. Chem
-
-
Brieke, C.1
-
18
-
-
84900433396
-
Structure of the epimerization domain of tyrocidine synthetase A
-
Samel, S. A., Czodrowski, P.&Essen, L.-O. Structure of the epimerization domain of tyrocidine synthetase A. Acta Crystallogr. D 70, 1442-1452 (2014).
-
(2014)
Acta Crystallogr. D
, vol.70
, pp. 1442-1452
-
-
Samel, S.A.1
Czodrowski, P.2
Essen, L.-O.3
-
19
-
-
84881664990
-
Crystal structures of the first condensation domain of CDA synthetase suggest conformational changes during the synthetic cycle of nonribosomal peptide synthetases
-
Bloudoff, K., Rodionov, D. & Schmeing, T. M. Crystal structures of the first condensation domain of CDA synthetase suggest conformational changes during the synthetic cycle of nonribosomal peptide synthetases. J. Mol. Biol. 425, 3137-3150 (2013).
-
(2013)
J. Mol Biol
, vol.425
, pp. 3137-3150
-
-
Bloudoff, K.1
Rodionov, D.2
Schmeing, T.M.3
-
20
-
-
48749083335
-
Crystal structure of the terminationmodule of a nonribosomal peptide synthetase
-
Tanovic, A., Samel, S. A., Essen, L.-O. & Marahiel, M. A. Crystal structure of the terminationmodule of a nonribosomal peptide synthetase. Science321,659-663 (2008).
-
(2008)
Science
, vol.321
, pp. 659-663
-
-
Tanovic, A.1
Samel, S.A.2
Essen, L.-O.3
Marahiel, M.A.4
-
21
-
-
34447282028
-
Structural and functional insights into a peptide bond-forming bidomain from a nonribosomal peptide synthetase
-
Samel, S. A., Schoenafinger, G., Knappe, T. A., Marahiel, M. A. & Essen, L.-O. Structural and functional insights into a peptide bond-forming bidomain from a nonribosomal peptide synthetase. Structure 15, 781-792 (2007).
-
(2007)
Structure
, vol.15
, pp. 781-792
-
-
Samel, S.A.1
Schoenafinger, G.2
Knappe, T.A.3
Marahiel, M.A.4
Essen, L.-O.5
-
22
-
-
0036295033
-
The structure of VibH represents nonribosomal peptide synthetase condensation, cyclization and epimerization domains
-
Keating, T. A., Marshall, C. G., Walsh, C. T. & Keating, A. E. The structure of VibH represents nonribosomal peptide synthetase condensation, cyclization and epimerization domains. Nature Struct. Mol. Biol. 9, 522-526 (2002).
-
(2002)
Nature Struct. Mol. Biol
, vol.9
, pp. 522-526
-
-
Keating, T.A.1
Marshall, C.G.2
Walsh, C.T.3
Keating, A.E.4
-
23
-
-
1642401951
-
Organization of the teicoplanin gene cluster in Actinoplanes teichomyceticus
-
Sosio, M. et al. Organization of the teicoplanin gene cluster in Actinoplanes teichomyceticus. Microbiology 150, 95-102 (2004).
-
(2004)
Microbiology
, vol.150
, pp. 95-102
-
-
Sosio, M.1
-
24
-
-
1142306159
-
Biosynthetic gene cluster of the glycopeptide antibiotic teicoplanin: Characterization of two glycosyltransferases and the key acyltransferase
-
Li, T.-L. et al. Biosynthetic gene cluster of the glycopeptide antibiotic teicoplanin: characterization of two glycosyltransferases and the key acyltransferase. Chem. Biol. 11, 107-119 (2004).
-
(2004)
Chem. Biol
, vol.11
, pp. 107-119
-
-
Li, T.-L.1
-
25
-
-
84905443941
-
The structure of a transient complex of a nonribosomal peptide synthetase and a cytochrome P450 monooxygenase
-
Haslinger, K. et al. The structure of a transient complex of a nonribosomal peptide synthetase and a cytochrome P450 monooxygenase. Angew. Chem. Int. Ed. Engl. 53, 8518-8522 (2014).
-
(2014)
Angew. Chem. Int. Ed. Engl
, vol.53
, pp. 8518-8522
-
-
Haslinger, K.1
-
26
-
-
84887958896
-
Cytochrome P450sky interacts directly with the nonribosomal peptide synthetase to generate three amino acid precursors in skyllamycin biosynthesis
-
Uhlmann, S., Süssmuth, R. D. & Cryle,M. J. Cytochrome P450sky interacts directly with the nonribosomal peptide synthetase to generate three amino acid precursors in skyllamycin biosynthesis. ACS Chem. Biol. 8, 2586-2596 (2013).
-
(2013)
ACS Chem. Biol
, vol.8
, pp. 2586-2596
-
-
Uhlmann, S.1
Süssmuth, R.D.2
Crylem, J.3
-
27
-
-
77955284586
-
Structural characterization of OxyD, a cytochrome P450 involved in b-hydroxytyrosine formation in vancomycin biosynthesis
-
Cryle, M. J., Meinhart, A. & Schlichting, I. Structural characterization of OxyD, a cytochrome P450 involved in b-hydroxytyrosine formation in vancomycin biosynthesis. J. Biol. Chem. 285, 24562-24574 (2010).
-
(2010)
J. Biol. Chem
, vol.285
, pp. 24562-24574
-
-
Cryle, M.J.1
Meinhart, A.2
Schlichting, I.3
-
28
-
-
57449096570
-
Structural insights froma P450carrier protein complex reveal howspecificity is achieved in the P450Biol ACP complex
-
Cryle,M. J.&Schlichting, I. Structural insights froma P450carrier protein complex reveal howspecificity is achieved in the P450Biol ACP complex. Proc. Natl Acad. Sci. USA 105, 15696-15701 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 15696-15701
-
-
Cryle, M.J.1
Schlichting, I.2
-
29
-
-
0032033520
-
Sequencing and analysis of genes involved in the biosynthesis of a vancomycin group antibiotic
-
van Wageningen, A. M. A. et al. Sequencing and analysis of genes involved in the biosynthesis of a vancomycin group antibiotic. Chem. Biol. 5, 155-162 (1998).
-
(1998)
Chem. Biol
, vol.5
, pp. 155-162
-
-
Van Wageningen, A.M.A.1
-
30
-
-
0037173032
-
Assemblingthe glycopeptide antibiotic scaffold: The biosynthesis of from Streptomyces toyocaensis NRRL15009
-
Pootoolal, J. et al.Assemblingthe glycopeptide antibiotic scaffold: the biosynthesis of from Streptomyces toyocaensis NRRL15009. Proc. Natl Acad. Sci. USA 99, 8962-8967 (2002).
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 8962-8967
-
-
Pootoolal, J.1
-
31
-
-
84858602406
-
InterPro in 2011: New developments in the family and domain prediction database
-
Hunter, S. et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40, D306-D312 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D306-D312
-
-
Hunter, S.1
-
32
-
-
48449106792
-
The Jpred 3 secondary structure prediction server
-
Cole, C., Barber, J. D. & Barton, G. J. The Jpred 3 secondary structure prediction server. Nucleic Acids Res. 36, W197-W201 (2008).
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W197-W201
-
-
Cole, C.1
Barber, J.D.2
Barton, G.J.3
-
33
-
-
57649089450
-
Screening of fusion partners for high yield expression and purification of bioactive viscotoxins
-
Bogomolovas, J., Simon, B., Sattler, M. & Stier, G. Screening of fusion partners for high yield expression and purification of bioactive viscotoxins. Protein Expr. Purif. 64, 16-23 (2009).
-
(2009)
Protein Expr. Purif
, vol.64
, pp. 16-23
-
-
Bogomolovas, J.1
Simon, B.2
Sattler, M.3
Stier, G.4
-
34
-
-
0347298786
-
Crystal structure of OxyB, a cytochrome P450 implicated in an oxidative phenol coupling reaction during vancomycin biosynthesis
-
Zerbe, K. et al. Crystal structure of OxyB, a cytochrome P450 implicated in an oxidative phenol coupling reaction during vancomycin biosynthesis. J. Biol. Chem. 277, 47476-47485 (2002).
-
(2002)
J. Biol. Chem
, vol.277
, pp. 47476-47485
-
-
Zerbe, K.1
-
35
-
-
84899832023
-
A facile Fmoc solid phase synthesis strategy to access epimerization-prone biosynthetic intermediates of glycopeptide antibiotics
-
Brieke, C. & Cryle, M. J. A facile Fmoc solid phase synthesis strategy to access epimerization-prone biosynthetic intermediates of glycopeptide antibiotics. Org. Lett. 16, 2454-2457 (2014).
-
(2014)
Org. Lett
, vol.16
, pp. 2454-2457
-
-
Brieke, C.1
Cryle, M.J.2
-
36
-
-
62649111637
-
Catalytic turnover-based phage selection for engineering the substrate specificity of Sfp phosphopantetheinyl transferase
-
Sunbul, M., Marshall, N. J., Zou, Y., Zhang, K. & Yin, J. Catalytic turnover-based phage selection for engineering the substrate specificity of Sfp phosphopantetheinyl transferase. J. Mol. Biol. 387, 883-898 (2009).
-
(2009)
J. Mol. Biol
, vol.387
, pp. 883-898
-
-
Sunbul, M.1
Marshall, N.J.2
Zou, Y.3
Zhang, K.4
Yin, J.5
-
37
-
-
72949120347
-
Selective oxidative demethylation of veratric acid to vanillic acid by CYP199A4 from Rhodopseudomonas palustris HaA2
-
Bell, S. G., Tan, A. B. H., Johnson, E. O. D. & Wong, L.-L. Selective oxidative demethylation of veratric acid to vanillic acid by CYP199A4 from Rhodopseudomonas palustris HaA2. Mol. Biosyst. 6, 206-214 (2010).
-
(2010)
Mol. Biosyst
, vol.6
, pp. 206-214
-
-
Bell, S.G.1
Tan, A.B.H.2
Johnson, E.O.D.3
Wong, L.-L.4
-
38
-
-
43549118151
-
New insights into the first oxidative phenol coupling reaction during vancomycin biosynthesis
-
Geib, N., Woithe, K., Zerbe, K., Li, D. B. & Robinson, J. A. New insights into the first oxidative phenol coupling reaction during vancomycin biosynthesis. Bioorg. Med. Chem. Lett. 18, 3081-3084 (2008).
-
(2008)
Bioorg. Med. Chem. Lett
, vol.18
, pp. 3081-3084
-
-
Geib, N.1
Woithe, K.2
Zerbe, K.3
Li, D.B.4
Robinson, J.A.5
-
40
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J. et al.Phaser crystallographic software. J.Appl.Crystallogr.40, 658-674 (2007).
-
(2007)
J. Appl. Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
-
41
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D 66, 486-501 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
42
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D 66, 213-221 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
43
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen, V. B. et al. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr. D 66, 12-21 (2010).
-
(2010)
Acta Crystallogr. D
, vol.66
, pp. 12-21
-
-
Chen, V.B.1
-
44
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel, E. & Henrick, K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D 60, 2256-2268 (2004).
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
45
-
-
77954288774
-
Dali server: Conservationmapping in 3D
-
Holm, L. & Rosenström, P. Dali server: conservationmapping in 3D. Nucleic Acids Res. 38, W545-W549 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W545-W549
-
-
Holm, L.1
Rosenström, P.2
-
46
-
-
36448991500
-
ClustalW and ClustalX version 2
-
Larkin, M. A. et al. ClustalW and ClustalX version 2. Bioinformatics 23, 2947-2948 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
47
-
-
34548232365
-
Inference ofmacromolecular assemblies fromcrystalline state
-
Krissinel, E.&Henrick, K. Inference ofmacromolecular assemblies fromcrystalline state. J. Mol. Biol. 372, 774-797 (2007).
-
(2007)
J. Mol. Biol
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
|