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Volumn 111, Issue 12, 2014, Pages

Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora

Author keywords

Comparative genomics; Genome sequencing

Indexed keywords

POLYKETIDE; RNA 16S;

EID: 84896918327     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1324161111     Document Type: Article
Times cited : (233)

References (66)
  • 1
    • 14544294545 scopus 로고    scopus 로고
    • Bioactive microbial metabolites
    • Bérdy J (2005) Bioactive microbial metabolites. J Antibiot (Tokyo) 58(1):1-26.
    • (2005) J Antibiot (Tokyo) , vol.58 , Issue.1 , pp. 1-26
    • Bérdy, J.1
  • 2
    • 84881378311 scopus 로고    scopus 로고
    • Antagonistic interactions mediated by marine bacteria: The role of small molecules
    • Wietz M, Duncan K, Patin NV, Jensen PR (2013) Antagonistic interactions mediated by marine bacteria: The role of small molecules. J Chem Ecol 39(7):879-891.
    • (2013) J Chem Ecol , vol.39 , Issue.7 , pp. 879-891
    • Wietz, M.1    Duncan, K.2    Patin, N.V.3    Jensen, P.R.4
  • 3
    • 33748631825 scopus 로고    scopus 로고
    • Assembly-line enzymology for polyketide and nonribosomal peptide antibiotics: Logic machinery, and mechanisms
    • DOI 10.1021/cr0503097
    • Fischbach MA, Walsh CT (2006) Assembly-line enzymology for polyketide and nonribosomal peptide antibiotics: Logic, machinery, and mechanisms. Chem Rev 106(8):3468-3496. (Pubitemid 44376945)
    • (2006) Chemical Reviews , vol.106 , Issue.8 , pp. 3468-3496
    • Fischbach, M.A.1    Walsh, C.T.2
  • 4
    • 70350708768 scopus 로고    scopus 로고
    • Evolution of metabolic diversity: Insights from microbial polyketide synthases
    • Jenke-Kodama H, Dittmann E (2009) Evolution of metabolic diversity: Insights from microbial polyketide synthases. Phytochemistry 70(15-16):1858-1866.
    • (2009) Phytochemistry , vol.70 , Issue.15-16 , pp. 1858-1866
    • Jenke-Kodama, H.1    Dittmann, E.2
  • 6
    • 69249202590 scopus 로고    scopus 로고
    • The biosynthetic logic of polyketide diversity
    • Hertweck C (2009) The biosynthetic logic of polyketide diversity. Angew Chem Int Ed Engl 48(26):4688-4716.
    • (2009) Angew Chem Int Ed Engl , vol.48 , Issue.26 , pp. 4688-4716
    • Hertweck, C.1
  • 7
    • 0036905773 scopus 로고    scopus 로고
    • Ways of assembling complex natural products on modular nonribosomal peptide synthetases
    • DOI 10.1002/1439-7633(20020603)3:6<490::AID-CBIC49
    • Mootz HD, Schwarzer D, Marahiel MA (2002) Ways of assembling complex natural products on modular nonribosomal peptide synthetases. ChemBioChem 3(6):490-504. (Pubitemid 36002311)
    • (2002) ChemBioChem , vol.3 , Issue.6 , pp. 490-504
    • Mootz, H.D.1    Schwarzer, D.2    Marahiel, M.A.3
  • 10
    • 84867648016 scopus 로고    scopus 로고
    • Phylogenetic approaches to natural product structure prediction
    • Ziemert N, Jensen PR (2012) Phylogenetic approaches to natural product structure prediction. Methods Enzymol 517:161-182.
    • (2012) Methods Enzymol , vol.517 , pp. 161-182
    • Ziemert, N.1    Jensen, P.R.2
  • 11
    • 34250710858 scopus 로고    scopus 로고
    • Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution
    • Rausch C, Hoof I, Weber T, Wohlleben W, Huson DH (2007) Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution. BMC Evol Biol 7:78.
    • (2007) BMC Evol Biol , vol.7 , pp. 78
    • Rausch, C.1    Hoof, I.2    Weber, T.3    Wohlleben, W.4    Huson, D.H.5
  • 12
    • 21244455575 scopus 로고    scopus 로고
    • Type I polyketide synthases may have evolved through horizontal gene transfer
    • Ginolhac A, et al. (2005) Type I polyketide synthases may have evolved through horizontal gene transfer. J Mol Evol 60(6):716-725.
    • (2005) J Mol Evol , vol.60 , Issue.6 , pp. 716-725
    • Ginolhac, A.1
  • 13
    • 0036731845 scopus 로고    scopus 로고
    • Molecular evolution of aromatic polyketides and comparative sequence analysis of polyketide ketosynthase and 16S ribosomal DNA genes from various Streptomyces species
    • DOI 10.1128/AEM.68.9.4472-4479.2002
    • Metsä-Ketelä M, et al. (2002) Molecular evolution of aromatic polyketides and comparative sequence analysis of polyketide ketosynthase and 16S ribosomal DNA genes from various Streptomyces species. Appl Environ Microbiol 68(9):4472-4479. (Pubitemid 34988130)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.9 , pp. 4472-4479
    • Metsa-Ketela, M.1    Halo, L.2    Munukka, E.3    Hakala, J.4    Mantsala, P.5    Ylihonko, K.6
  • 14
    • 84883615133 scopus 로고    scopus 로고
    • Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes
    • Doroghazi JR, Metcalf WW (2013) Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes. BMC Genomics 14:611.
    • (2013) BMC Genomics , vol.14 , pp. 611
    • Doroghazi, J.R.1    Metcalf, W.W.2
  • 15
    • 68149179629 scopus 로고    scopus 로고
    • New natural product biosynthetic chemistry discovered by genome mining
    • Corre C, Challis GL (2009) New natural product biosynthetic chemistry discovered by genome mining. Nat Prod Rep 26(8):977-986.
    • (2009) Nat Prod Rep , vol.26 , Issue.8 , pp. 977-986
    • Corre, C.1    Challis, G.L.2
  • 16
    • 84876673791 scopus 로고    scopus 로고
    • Salinispora pacifica sp. Nov., an actinomycete from marine sediments
    • Ahmed L, et al. (2013) Salinispora pacifica sp. nov., an actinomycete from marine sediments. Antonie van Leeuwenhoek 103(5):1069-1078.
    • (2013) Antonie Van Leeuwenhoek , vol.103 , Issue.5 , pp. 1069-1078
    • Ahmed, L.1
  • 18
    • 84884188935 scopus 로고    scopus 로고
    • Multilocus sequence typing reveals evidence of homologous recombination linked to antibiotic resistance in the genus Salinispora
    • Freel KC, Millán-Aguiñaga N, Jensen PR (2013) Multilocus sequence typing reveals evidence of homologous recombination linked to antibiotic resistance in the genus Salinispora. Appl Environ Microbiol 79(19):5997-6005.
    • (2013) Appl Environ Microbiol , vol.79 , Issue.19 , pp. 5997-6005
    • Freel, K.C.1    Millán-Aguiñaga, N.2    Jensen, P.R.3
  • 19
    • 33749391642 scopus 로고    scopus 로고
    • Biogeography of the marine actinomycete Salinispora
    • DOI 10.1111/j.1462-2920.2006.01093.x
    • Jensen PR, Mafnas C (2006) Biogeography of the marine actinomycete Salinispora. Environ Microbiol 8(11):1881-1888. (Pubitemid 44506885)
    • (2006) Environmental Microbiology , vol.8 , Issue.11 , pp. 1881-1888
    • Jensen, P.R.1    Mafnas, C.2
  • 22
    • 62149103377 scopus 로고    scopus 로고
    • Discovery and development of the anticancer agent salinosporamide A (NPI-0052)
    • Fenical W, et al. (2009) Discovery and development of the anticancer agent salinosporamide A (NPI-0052). Bioorg Med Chem 17(6):2175-2180.
    • (2009) Bioorg Med Chem , vol.17 , Issue.6 , pp. 2175-2180
    • Fenical, W.1
  • 24
    • 70349464475 scopus 로고    scopus 로고
    • Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
    • Penn K, et al. (2009) Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. ISME J 3(10):1193-1203.
    • (2009) ISME J , vol.3 , Issue.10 , pp. 1193-1203
    • Penn, K.1
  • 25
    • 33847186292 scopus 로고    scopus 로고
    • Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora
    • Jensen PR, Williams PG, Oh DC, Zeigler L, Fenical W (2007) Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl Environ Microbiol 73(4):1146-1152.
    • (2007) Appl Environ Microbiol , vol.73 , Issue.4 , pp. 1146-1152
    • Jensen, P.R.1    Williams, P.G.2    Oh, D.C.3    Zeigler, L.4    Fenical, W.5
  • 26
    • 84856586273 scopus 로고    scopus 로고
    • Microdiversity and evidence for high dispersal rates in the marine actinomycete 'Salinispora pacifica'
    • Freel KC, Edlund A, Jensen PR (2012) Microdiversity and evidence for high dispersal rates in the marine actinomycete 'Salinispora pacifica'. Environ Microbiol Rep 14(2):480-493.
    • (2012) Environ Microbiol Rep , vol.14 , Issue.2 , pp. 480-493
    • Freel, K.C.1    Edlund, A.2    Jensen, P.R.3
  • 27
    • 79959920872 scopus 로고    scopus 로고
    • antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
    • Medema MH, et al. (2011) antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res 39(Web Server issue, Suppl 2):W339-W346.
    • (2011) Nucleic Acids Res , vol.39 , Issue.WEB SERVER ISSUE SUPPL. 2
    • Medema, M.H.1
  • 28
    • 84875408810 scopus 로고    scopus 로고
    • Structures and comparative characterization of biosynthetic gene clusters for cyanosporasides, enediyne-derived natural products from marine actinomycetes
    • Lane AL, et al. (2013) Structures and comparative characterization of biosynthetic gene clusters for cyanosporasides, enediyne-derived natural products from marine actinomycetes. J Am Chem Soc 135(11):4171-4174.
    • (2013) J Am Chem Soc , vol.135 , Issue.11 , pp. 4171-4174
    • Lane, A.L.1
  • 29
    • 39749100521 scopus 로고    scopus 로고
    • Unraveling the biosynthesis of the sporolide cyclohexenone building block
    • DOI 10.1021/ja710488m
    • McGlinchey RP, Nett M, Moore BS (2008) Unraveling the biosynthesis of the sporolide cyclohexenone building block. J Am Chem Soc 130(8):2406-2407. (Pubitemid 351304734)
    • (2008) Journal of the American Chemical Society , vol.130 , Issue.8 , pp. 2406-2407
    • McGlinchey, R.P.1    Nett, M.2    Moore, B.S.3
  • 30
    • 68149134832 scopus 로고    scopus 로고
    • Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine
    • Eustáquio AS, et al. (2009) Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine. Proc Natl Acad Sci USA 106(30):12295-12300.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.30 , pp. 12295-12300
    • Eustáquio, A.S.1
  • 32
    • 84888095812 scopus 로고    scopus 로고
    • Glycogenomics as a mass spectrometry-guided genomemining method for microbial glycosylated molecules
    • Kersten RD, et al. (2013) Glycogenomics as a mass spectrometry-guided genomemining method for microbial glycosylated molecules. Proc Natl Acad Sci USA 110(47):E4407-E4416.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.47
    • Kersten, R.D.1
  • 33
    • 77956430155 scopus 로고    scopus 로고
    • Shared biosynthesis of the saliniketals and rifamycins in Salinispora arenicola is controlled by the sare1259-encoded cytochrome P450
    • Wilson MC, Gulder TAM, Mahmud T, Moore BS (2010) Shared biosynthesis of the saliniketals and rifamycins in Salinispora arenicola is controlled by the sare1259-encoded cytochrome P450. J Am Chem Soc 132(36):12757-12765.
    • (2010) J Am Chem Soc , vol.132 , Issue.36 , pp. 12757-12765
    • Wilson, M.C.1    Gulder, T.A.M.2    Mahmud, T.3    Moore, B.S.4
  • 34
    • 80052099035 scopus 로고    scopus 로고
    • Discovery and assembly-line biosynthesis of the lymphostin pyrroloquinoline alkaloid family of mTOR inhibitors in Salinispora bacteria
    • Miyanaga A, et al. (2011) Discovery and assembly-line biosynthesis of the lymphostin pyrroloquinoline alkaloid family of mTOR inhibitors in Salinispora bacteria. J Am Chem Soc 133(34):13311-13313.
    • (2011) J Am Chem Soc , vol.133 , Issue.34 , pp. 13311-13313
    • Miyanaga, A.1
  • 35
    • 84878015616 scopus 로고    scopus 로고
    • Bioactivity-guided genome mining reveals the lomaiviticin biosynthetic gene cluster in Salinispora tropica
    • Kersten RD, et al. (2013) Bioactivity-guided genome mining reveals the lomaiviticin biosynthetic gene cluster in Salinispora tropica. ChemBioChem 14(8):955-962.
    • (2013) ChemBioChem , vol.14 , Issue.8 , pp. 955-962
    • Kersten, R.D.1
  • 36
    • 0034521526 scopus 로고    scopus 로고
    • Cloning, sequencing and analysis of the enterocin biosynthesis gene cluster from the marine isolate 'Streptomyces maritimus': Evidence for the derailment of an aromatic polyketide synthase
    • DOI 10.1016/S1074-5521(00)00044-2, PII S1074552100000442
    • Piel J, et al. (2000) Cloning, sequencing and analysis of the enterocin biosynthesis gene cluster from the marine isolate ' Streptomyces maritimus': Evidence for the derailment of an aromatic polyketide synthase. Chem Biol 7(12):943-955. (Pubitemid 32045049)
    • (2000) Chemistry and Biology , vol.7 , Issue.12 , pp. 943-955
    • Piel, J.1    Hertweck, C.2    Shipley, P.R.3    Hunt, D.M.4    Newman, M.S.5    Moore, B.S.6
  • 37
    • 34447299920 scopus 로고    scopus 로고
    • Arenicolides A-C, 26-membered ring macrolides from the marine actinomycete Salinispora arenicola
    • DOI 10.1021/jo061878x
    • Williams PG, Miller ED, Asolkar RN, Jensen PR, Fenical W (2007) Arenicolides A-C, 26-membered ring macrolides from the marine actinomycete Salinispora arenicola . J Org Chem 72(14):5025-5034. (Pubitemid 47056184)
    • (2007) Journal of Organic Chemistry , vol.72 , Issue.14 , pp. 5025-5034
    • Williams, P.G.1    Miller, E.D.2    Asolkar, R.N.3    Jensen, P.R.4    Fenical, W.5
  • 38
    • 0034870192 scopus 로고    scopus 로고
    • Quantifying biodiversity: Procedures and pitfalls in the measurement and comparison of species richness
    • DOI 10.1046/j.1461-0248.2001.00230.x
    • Gotelli NJ, Colwell RK (2001) Quantifying biodiversity: Procedures and pitfalls in the measurement and comparison of species richness. Ecol Lett 4(4):379-391. (Pubitemid 32752218)
    • (2001) Ecology Letters , vol.4 , Issue.4 , pp. 379-391
    • Gotelli, N.J.1    Colwell, R.K.2
  • 39
    • 82955206440 scopus 로고    scopus 로고
    • Evolution of secondary metabolite genes in three closely related marine actinomycete species
    • Freel KC, Nam S-J, Fenical W, Jensen PR (2011) Evolution of secondary metabolite genes in three closely related marine actinomycete species. Appl Environ Microbiol 77(20):7261-7270.
    • (2011) Appl Environ Microbiol , vol.77 , Issue.20 , pp. 7261-7270
    • Freel, K.C.1    Nam, S.-J.2    Fenical, W.3    Jensen, P.R.4
  • 40
    • 33644964280 scopus 로고    scopus 로고
    • Discovery of a new source of rifamycin antibiotics in marine sponge actinobacteria by phylogenetic prediction
    • Kim TK, Hewavitharana AK, Shaw PN, Fuerst JA (2006) Discovery of a new source of rifamycin antibiotics in marine sponge actinobacteria by phylogenetic prediction. Appl Environ Microbiol 72(3):2118-2125.
    • (2006) Appl Environ Microbiol , vol.72 , Issue.3 , pp. 2118-2125
    • Kim, T.K.1    Hewavitharana, A.K.2    Shaw, P.N.3    Fuerst, J.A.4
  • 41
    • 20444488858 scopus 로고    scopus 로고
    • Culturable marine actinomycete diversity from tropical Pacific Ocean sediments
    • DOI 10.1111/j.1462-2920.2005.00785.x
    • Jensen PR, Gontang E, Mafnas C, Mincer TJ, Fenical W (2005) Culturable marine actinomycete diversity from tropical Pacific Ocean sediments. Environ Microbiol 7(7):1039-1048. (Pubitemid 40817162)
    • (2005) Environmental Microbiology , vol.7 , Issue.7 , pp. 1039-1048
    • Jensen, P.R.1    Gontang, E.2    Mafnas, C.3    Mincer, T.J.4    Fenical, W.5
  • 42
    • 2442449227 scopus 로고    scopus 로고
    • Genomic islands in pathogenic and environmental microorganisms
    • DOI 10.1038/nrmicro884
    • Dobrindt U, Hochhut B, Hentschel U, Hacker J (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2(5):414-424. (Pubitemid 39490120)
    • (2004) Nature Reviews Microbiology , vol.2 , Issue.5 , pp. 414-424
    • Dobrindt, U.1    Hochhut, B.2    Hentschel, U.3    Hacker, J.4
  • 43
    • 0036523418 scopus 로고    scopus 로고
    • Combinatorial biosynthesis of antibiotics: Challenges and opportunities
    • Walsh CT (2002) Combinatorial biosynthesis of antibiotics: Challenges and opportunities. ChemBioChem 3(2-3):125-134.
    • (2002) ChemBioChem , vol.3 , Issue.2-3 , pp. 125-134
    • Walsh, C.T.1
  • 44
    • 30544434619 scopus 로고    scopus 로고
    • Combinatorial biosynthesis of reduced polyketides
    • DOI 10.1038/nrmicro1287, PII N1287
    • Weissman KJ, Leadlay PF (2005) Combinatorial biosynthesis of reduced polyketides. Nat Rev Microbiol 3(12):925-936. (Pubitemid 43078156)
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.12 , pp. 925-936
    • Weissman, K.J.1    Leadlay, P.F.2
  • 46
    • 70350722394 scopus 로고    scopus 로고
    • Genomic basis for natural product biosynthetic diversity in the actinomycetes
    • Nett M, Ikeda H, Moore BS (2009) Genomic basis for natural product biosynthetic diversity in the actinomycetes. Nat Prod Rep 26(11):1362-1384.
    • (2009) Nat Prod Rep , vol.26 , Issue.11 , pp. 1362-1384
    • Nett, M.1    Ikeda, H.2    Moore, B.S.3
  • 47
    • 14944383798 scopus 로고    scopus 로고
    • The evolving role of natural products in drug discovery
    • DOI 10.1038/nrd1657
    • Koehn FE, Carter GT (2005) The evolving role of natural products in drug discovery. Nat Rev Drug Discov 4(3):206-220. (Pubitemid 40372555)
    • (2005) Nature Reviews Drug Discovery , vol.4 , Issue.3 , pp. 206-220
    • Koehn, F.E.1    Carter, G.T.2
  • 48
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan FM (2002) What are bacterial species? Annu Rev Microbiol 56:457-487.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 49
    • 70349231218 scopus 로고    scopus 로고
    • Bioinformatic perspectives on NRPS/PKS megasynthases: Advances and challenges
    • Jenke-Kodama H, Dittmann E (2009) Bioinformatic perspectives on NRPS/PKS megasynthases: Advances and challenges. Nat Prod Rep 26(7):874-883.
    • (2009) Nat Prod Rep , vol.26 , Issue.7 , pp. 874-883
    • Jenke-Kodama, H.1    Dittmann, E.2
  • 50
    • 0001747786 scopus 로고    scopus 로고
    • Genetic contributions to understanding polyketide synthases
    • Hopwood DA (1997) Genetic contributions to understanding polyketide synthases. Chem Rev 97(7):2465-2498.
    • (1997) Chem Rev , vol.97 , Issue.7 , pp. 2465-2498
    • Hopwood, D.A.1
  • 51
    • 34249744449 scopus 로고    scopus 로고
    • Phylogenetic diversity of gram-positive bacteria cultured from marine sediments
    • DOI 10.1128/AEM.02811-06
    • Gontang EA, Fenical W, Jensen PR (2007) Phylogenetic diversity of Gram-positive bacteria cultured from marine sediments. Appl Environ Microbiol 73(10):3272-3282. (Pubitemid 46834979)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.10 , pp. 3272-3282
    • Gontang, E.A.1    Fenical, W.2    Jensen, P.R.3
  • 52
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • DOI 10.1101/gr.074492.107
    • Zerbino DR, Birney E (2008) Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18(5):821-829. (Pubitemid 351645072)
    • (2008) Genome Research , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 53
    • 79952178131 scopus 로고    scopus 로고
    • High-quality draft assemblies of mammalian genomes from massively parallel sequence data
    • Gnerre S, et al. (2011) High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc Natl Acad Sci USA 108(4):1513-1518.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.4 , pp. 1513-1518
    • Gnerre, S.1
  • 54
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P (1998) Consed: A graphical tool for sequence finishing. Genome Res 8(3):195-202. (Pubitemid 28177231)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 55
    • 77952299957 scopus 로고    scopus 로고
    • Prodigal: Prokaryotic gene recognition and translation initiation site identification
    • Hyatt D, et al. (2010) Prodigal: Prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119.
    • (2010) BMC Bioinformatics , vol.11 , pp. 119
    • Hyatt, D.1
  • 56
    • 77953023066 scopus 로고    scopus 로고
    • GenePRIMP: A gene prediction improvement pipeline for prokaryotic genomes
    • Pati A, et al. (2010) GenePRIMP: A gene prediction improvement pipeline for prokaryotic genomes. Nat Methods 7(6):455-457.
    • (2010) Nat Methods , vol.7 , Issue.6 , pp. 455-457
    • Pati, A.1
  • 57
    • 84859078407 scopus 로고    scopus 로고
    • The natural product domain seeker NaPDoS: A phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
    • Ziemert N, et al. (2012) The natural product domain seeker NaPDoS: A phylogeny based bioinformatic tool to classify secondary metabolite gene diversity. PLoS ONE 7(3):e34064.
    • (2012) PLoS ONE , vol.7 , Issue.3
    • Ziemert, N.1
  • 58
    • 84876587454 scopus 로고    scopus 로고
    • Detecting sequence homology at the gene cluster level with MultiGeneBlast
    • Medema MH, Takano E, Breitling R (2013) Detecting sequence homology at the gene cluster level with MultiGeneBlast. Mol Biol Evol 30(5):1218-1223.
    • (2013) Mol Biol Evol , vol.30 , Issue.5 , pp. 1218-1223
    • Medema, M.H.1    Takano, E.2    Breitling, R.3
  • 60
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) MODELTEST: Testing the model of DNA substitution. Bioinformatics 14(9):817-818. (Pubitemid 28552116)
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 61
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol 59(3):307-321.
    • (2010) Syst Biol , vol.59 , Issue.3 , pp. 307-321
    • Guindon, S.1
  • 62
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731-2739.
    • (2011) Mol Biol Evol , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1
  • 63
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17(8):754-755. (Pubitemid 32851390)
    • (2001) Bioinformatics , vol.17 , Issue.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 64
    • 79959240236 scopus 로고    scopus 로고
    • CONTIGuator: A bacterial genomes finishing tool for structural insights on draft genomes
    • Galardini M, Biondi EG, Bazzicalupo M, Mengoni A (2011) CONTIGuator: A bacterial genomes finishing tool for structural insights on draft genomes. Source Code Biol Med 6:11.
    • (2011) Source Code Biol Med , vol.6 , pp. 11
    • Galardini, M.1    Biondi, E.G.2    Bazzicalupo, M.3    Mengoni, A.4
  • 65
    • 33646463757 scopus 로고    scopus 로고
    • Cyanosporasides A and B, chloro- and cyano-cyclopenta[a]indene glycosides from the marine actinomycete "Salinispora pacifica"
    • DOI 10.1021/ol052686b
    • Oh D-C, Williams PG, Kauffman CA, Jensen PR, Fenical W (2006) Cyanosporasides A and B, chloro- and cyano-cyclopenta[a]indene glycosides from the marine actinomycete "Salinispora pacifica". Org Lett 8(6):1021-1024. (Pubitemid 43690650)
    • (2006) Organic Letters , vol.8 , Issue.6 , pp. 1021-1024
    • Oh, D.-C.1    Williams, P.G.2    Kauffman, C.A.3    Jensen, P.R.4    Fenical, W.5
  • 66
    • 33751100882 scopus 로고    scopus 로고
    • Developing a new resource for drug discovery: Marine actinomycete bacteria
    • DOI 10.1038/nchembio841, PII NCHEMBIO841
    • Fenical W, Jensen PR (2006) Developing a new resource for drug discovery: Marine actinomycete bacteria. Nat Chem Biol 2(12):666-673. (Pubitemid 44764208)
    • (2006) Nature Chemical Biology , vol.2 , Issue.12 , pp. 666-673
    • Fenical, W.1    Jensen, P.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.