PRODORIC: Prokaryotic database of gene regulation

Nucleic Acids Research

Volumn 31, Issue 1, 2003, Pages 266-269

  Münch, Richard ^a   Hiller, Karsten ^a   Barg, Heiko ^a   Heldt, Dana ^a   Linz, Simone ^a   Wingender, Edgar ^b,c   Jahn, Dieter ^a  

^a TECHNICAL UNIVERSITY OF BRAUNSCHWEIG   (Germany)

^b HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^c BIOBASE GMBH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

REGULATOR PROTEIN; TRANSCRIPTION FACTOR;

BINDING SITE; CIS ISOMER; GENE CONTROL; GENE EXPRESSION; GENE SEQUENCE; GENE STRUCTURE; GENETIC DATABASE; GENETIC TRANSCRIPTION; INFORMATION PROCESSING; OPERON; PATHOGENICITY; PRIORITY JOURNAL; PRODORIC; PROKARYOTE; PROMOTER REGION; PSEUDOMONAS AERUGINOSA; REVIEW; RNA TRANSLATION; TRANS ISOMER; TRANSLATION INITIATION;

BACTERIA; BINDING SITES; DATABASES, GENETIC; GENE COMPONENTS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; PROKARYOTIC CELLS; PSEUDOMONAS AERUGINOSA; SOFTWARE; TRANSCRIPTION FACTORS; USER-COMPUTER INTERFACE;

PROKARYOTA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA;

EID: 0037250153     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg037     Document Type: Review

References (12)

1. Salgado,H., Santos-Zavaleta,A., Gama-Castro,S., Millan-Zarate,D., Diaz-Peredo,E., Sanchez-Solano,F., Perez-Rueda,E., Bonavides-Martinez,C. and Collado-Vides,J. (2001) RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Res., 29, 72-74.
2. Robison,K., McGuire,A.M. and Church,G.M. (1998) A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 Genome. J. Mol. Biol., 284, 241-254.
3. Moszer,I., Jones,L.M., Moreira,S., Fabry,C. and Danchin,A. (2002) Subtilist: the reference database for the Bacillus subtilis genome. Nucleic Acids Res., 30, 62-65.
4. Ishii,T., Yoshida,K., Terai,G., Fujita,Y. and Nakai,K. (2001) DBTBS: a database of Bacillus subtilis promoters and transcription factors. Nucleic Acids Res., 29, 278-280.
5. Wingender,E., Chen,X., Fricke,E., Geffers,R., Hehl,R., Liebich,I., Krull,M., Matys,V., Michael,H., Ohnhäuser,R., Prüß,M., Schacherer,F., Thiele,S. and Urbach,S. (2001) The TRANSFAC system on gene expression regulation. Nucleic Acids Res., 29, 281-283.
6. Falb,M. (2001) Etablierung einer Datenbank für prokaryontische Transcriptionsfaktoren (TRANSFACmicro). Diploma thesis, Technical University Braunschweig.
7. Tatusov,R.L., Natale,D.A., Garkavtsev,I.V., Tatusova,T.A., Shankavaram,U.T., Rao,B.S., Kiryutin,B., Galperin,M.Y., Fedorova,N.D. and Koonin,E.V. (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res., 29, 22-28.
8. Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
9. Stoll,R.D. and Leierer,G.A. (2001) PHP 4 + MySQL. Data Becker, Düsseldorf.
10. Schneider,T.D., Stormo,G.D., Gold,L. and Ehrenfeucht,A. (1986) Information content of binding sites on nucleotide sequences. J. Mol. Biol., 188, 415-431.
11. Quandt,K., Frech,K., Karas,H., Wingender,E. and Werner,T. (1995) MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res., 23, 4878-4884.
12. Schacherer,F., Choi,C., Goetze,U., Krull,M., Pistor,S. and Wingender,E. (2001) The TRANSPATH signal transduction database: a knowledge base on signal transduction networks. Bioinformatics, 17, 1053-1057.