메뉴 건너뛰기




Volumn 17, Issue 11, 2016, Pages 704-714

Genetic drift, selection and the evolution of the mutation rate

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE;

EID: 84991712897     PISSN: 14710056     EISSN: 14710064     Source Type: Journal    
DOI: 10.1038/nrg.2016.104     Document Type: Review
Times cited : (569)

References (112)
  • 1
    • 0035404535 scopus 로고    scopus 로고
    • Evolving responsively: Adaptive mutation
    • Rosenberg, S. M. Evolving responsively: adaptive mutation. Nat. Rev. Genet. 2, 504-515 (2001
    • (2001) Nat. Rev. Genet , vol.2 , pp. 504-515
    • Rosenberg, S.M.1
  • 3
    • 84860512528 scopus 로고    scopus 로고
    • Evidence of non-random mutation rates suggests an evolutionary risk management strategy
    • Martincorena, I., Seshasayee, A. S., & Luscombe, N. M. Evidence of non-random mutation rates suggests an evolutionary risk management strategy. Nature 485, 95-98 (2012
    • (2012) Nature , vol.485 , pp. 95-98
    • Martincorena, I.1    Seshasayee, A.S.2    Luscombe, N.M.3
  • 4
    • 84875609978 scopus 로고    scopus 로고
    • Accelerated gene evolution through replication-transcription conflicts
    • Paul, S., Million-Weaver, S., Chattopadhyay, S., Sokurenko, E., & Merrikh, H. Accelerated gene evolution through replication-transcription conflicts. Nature 495, 512-515 (2013
    • (2013) Nature , vol.495 , pp. 512-515
    • Paul, S.1    Million-Weaver, S.2    Chattopadhyay, S.3    Sokurenko, E.4    Merrikh, H.5
  • 5
    • 85006284588 scopus 로고    scopus 로고
    • Stress-induced mutagenesis and complex adaptation
    • Ram, Y., & Hadany, L. Stress-induced mutagenesis and complex adaptation. Proc. Biol. Sci. 281, 20141025 (2014
    • (2014) Proc. Biol. Sci , vol.281 , pp. 20141025
    • Ram, Y.1    Hadany, L.2
  • 6
    • 58149333880 scopus 로고    scopus 로고
    • The cellular, developmental, and population-genetic determinants of mutation-rate evolution
    • Lynch, M. The cellular, developmental, and population-genetic determinants of mutation-rate evolution. Genetics 180, 933-943 (2008
    • (2008) Genetics , vol.180 , pp. 933-943
    • Lynch, M.1
  • 7
    • 80052736277 scopus 로고    scopus 로고
    • The lower bound to the evolution of mutation rates
    • Lynch, M. The lower bound to the evolution of mutation rates. Genome Biol. Evol. 3, 1107-1118 (2011
    • (2011) Genome Biol. Evol , vol.3 , pp. 1107-1118
    • Lynch, M.1
  • 8
    • 84874193830 scopus 로고    scopus 로고
    • Evaluating evolutionary models of stress-induced mutagenesis in bacteria
    • MacLean, R. C., Torres-Barceló, C., & Moxon, R. Evaluating evolutionary models of stress-induced mutagenesis in bacteria. Nat. Rev. Genet. 14, 221-227 (2013
    • (2013) Nat. Rev. Genet , vol.14 , pp. 221-227
    • MacLean, R.C.1    Torres-Barceló, C.2    Moxon, R.3
  • 9
    • 84959609205 scopus 로고
    • On the evolutionary adjustment of spontaneous mutation rates
    • Kimura, M. On the evolutionary adjustment of spontaneous mutation rates. Genet. Res. 9, 23-34 (1967
    • (1967) Genet. Res , vol.9 , pp. 23-34
    • Kimura, M.1
  • 10
    • 0029074889 scopus 로고
    • Modifiers of mutation-selection balance: General approach and the evolution of mutation rates
    • Kondrashov, A. S. Modifiers of mutation-selection balance: general approach and the evolution of mutation rates. Genet. Res. 66, 53-70 (1995
    • (1995) Genet. Res , vol.66 , pp. 53-70
    • Kondrashov, A.S.1
  • 11
    • 0033080497 scopus 로고    scopus 로고
    • The dynamics of infinitesimally rare alleles, applied to the evolution of mutation rates and the expression of deleterious mutations
    • Dawson, K. J. The dynamics of infinitesimally rare alleles, applied to the evolution of mutation rates and the expression of deleterious mutations. Theor. Pop. Biol. 55, 1-22 (1999
    • (1999) Theor. Pop. Biol , vol.55 , pp. 1-22
    • Dawson, K.J.1
  • 12
    • 0032815107 scopus 로고    scopus 로고
    • Spontaneous deleterious mutation
    • Lynch, M., et al. Spontaneous deleterious mutation. Evolution 53, 645-663 (1999
    • (1999) Evolution , vol.53 , pp. 645-663
    • Lynch, M.1
  • 13
    • 34447564992 scopus 로고    scopus 로고
    • Mutation rate variation in multicellular eukaryotes: Causes and consequences
    • Baer, C. F., Miyamoto, M. M., & Denver, D. R. Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat. Rev. Genet. 8, 619-631 (2007
    • (2007) Nat. Rev. Genet , vol.8 , pp. 619-631
    • Baer, C.F.1    Miyamoto, M.M.2    Denver, D.R.3
  • 14
    • 34447546660 scopus 로고    scopus 로고
    • The distribution of fitness effects of new mutations
    • Eyre-Walker, A., & Keightley, P. D. The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8, 610-618 (2007
    • (2007) Nat. Rev. Genet , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 15
    • 84991731412 scopus 로고    scopus 로고
    • The rate and effects of spontaneous mutation on fitness traits in the social amoeba dictyostelium discoideum
    • Hall, D. W., Fox, S., Kuzdzal-Fick, J. J., Strassmann, J. E., & Queller, D. C. The rate and effects of spontaneous mutation on fitness traits in the social amoeba, Dictyostelium discoideum. G3 (Bethesda) 8, 1115-1127 (2013
    • (2013) G3 (Bethesda , vol.8 , pp. 1115-1127
    • Hall, D.W.1    Fox, S.2    Kuzdzal-Fick, J.J.3    Strassmann, J.E.4    Queller, D.C.5
  • 16
    • 84869212334 scopus 로고    scopus 로고
    • Evolutionary layering and the limits to cellular perfection
    • Lynch, M. Evolutionary layering and the limits to cellular perfection. Proc. Natl Acad. Sci. USA 109, 18851-18856 (2012
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 18851-18856
    • Lynch, M.1
  • 18
    • 0034542564 scopus 로고    scopus 로고
    • The evolution of mutation rates: Separating causes from consequences
    • Sniegowski, P. D., Gerrish, P. J., Johnson, T., & Shaver, A. The evolution of mutation rates: separating causes from consequences. Bioessays 22, 1057-1066 (2000
    • (2000) Bioessays , vol.22 , pp. 1057-1066
    • Sniegowski, P.D.1    Gerrish, P.J.2    Johnson, T.3    Shaver, A.4
  • 19
    • 33644759282 scopus 로고    scopus 로고
    • The evolution of mutation rate in finite asexual populations
    • André, J. B., & Godelle, B. The evolution of mutation rate in finite asexual populations. Genetics 172, 611-626 (2006
    • (2006) Genetics , vol.172 , pp. 611-626
    • André, J.B.1    Godelle, B.2
  • 20
    • 0016269656 scopus 로고
    • Studies on the biochemical basis of spontaneous mutation II the incorporation of base and its analogue into DNA by wild type, mutator and antimutator DNA polymerases
    • Bessman, M. J., Muzyczka, N., Goodman, M. F., & Schnaar, R. L. Studies on the biochemical basis of spontaneous mutation. II. The incorporation of base and its analogue into DNA by wild type, mutator and antimutator DNA polymerases. J. Mol. Biol. 88, 409-421 (1974
    • (1974) J. Mol. Biol , vol.88 , pp. 409-421
    • Bessman, M.J.1    Muzyczka, N.2    Goodman, M.F.3    Schnaar, R.L.4
  • 21
    • 34249660610 scopus 로고    scopus 로고
    • Highly tolerated amino acid substitutions increase the fidelity of Escherichia coli DNA polymerase i
    • Loh, E., J. Choe, J., & Loeb, L. A. Highly tolerated amino acid substitutions increase the fidelity of Escherichia coli DNA polymerase I. J. Biol. Chem. 282, 12201-12209 (2007
    • (2007) J. Biol. Chem , vol.282 , pp. 12201-12209
    • Loh, E.1    Choe J, J.2    Loeb, L.A.3
  • 22
    • 50149096581 scopus 로고    scopus 로고
    • The enhanced DNA replication fidelity of a mutant herpes simplex virus type 1 DNA polymerase is mediated by an improved nucleotide selectivity and reduced mismatch extension ability
    • Tian, W., Hwang, Y. T., & Hwang, C. B. The enhanced DNA replication fidelity of a mutant herpes simplex virus type 1 DNA polymerase is mediated by an improved nucleotide selectivity and reduced mismatch extension ability. J. Virol. 82, 8937-8941 (2008
    • (2008) J. Virol , vol.82 , pp. 8937-8941
    • Tian, W.1    Hwang, Y.T.2    Hwang, C.B.3
  • 23
    • 75749154085 scopus 로고    scopus 로고
    • Optimization of DNA polymerase mutation rates during bacterial evolution
    • Loh, E., Salk, J. J., & Loeb, L. A. Optimization of DNA polymerase mutation rates during bacterial evolution. Proc. Natl Acad. Sci. USA 107, 1154-1159 (2010
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 1154-1159
    • Loh, E.1    Salk, J.J.2    Loeb, L.A.3
  • 24
  • 25
    • 0032425482 scopus 로고    scopus 로고
    • The diverse and dynamic structure of bacterial genomes
    • Casjens, S. The diverse and dynamic structure of bacterial genomes. Annu. Rev. Genet. 32, 339-377 (1998
    • (1998) Annu. Rev. Genet , vol.32 , pp. 339-377
    • Casjens, S.1
  • 26
    • 2942565809 scopus 로고    scopus 로고
    • Quantitative relationships for specific growth rates and macromolecular compositions of Mycobacterium tuberculosis streptomyces coelicolor A3(2) and Escherichia coli B/r: An integrative theoretical approach
    • Cox, R. A. Quantitative relationships for specific growth rates and macromolecular compositions of Mycobacterium tuberculosis, Streptomyces coelicolor A3(2) and Escherichia coli B/r: an integrative theoretical approach. Microbiology 150, 1413-1426 (2004
    • (2004) Microbiology , vol.150 , pp. 1413-1426
    • Cox, R.A.1
  • 27
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • Mira, A., Ochman, H., & Moran, N. A. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17, 589-596 (2001
    • (2001) Trends Genet , vol.17 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 28
    • 77954655737 scopus 로고    scopus 로고
    • No evidence for elemental-based streamlining of prokaryotic genomes
    • Vieira-Silva, S., Touchon, M., & Rocha, E. P. No evidence for elemental-based streamlining of prokaryotic genomes. Trends Ecol. Evol. 25, 319-320 (2010
    • (2010) Trends Ecol. Evol , vol.25 , pp. 319-320
    • Vieira-Silva, S.1    Touchon, M.2    Rocha, E.P.3
  • 29
    • 77955090647 scopus 로고    scopus 로고
    • Evolution of the mutation rate
    • Lynch, M. Evolution of the mutation rate. Trends Genet. 26, 345-352 (2010
    • (2010) Trends Genet , vol.26 , pp. 345-352
    • Lynch, M.1
  • 30
    • 0025886466 scopus 로고
    • A constant rate of spontaneous mutation in DNA-based microbes
    • Drake, J. W. A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl Acad. Sci. USA 88, 7160-7164 (1991
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 7160-7164
    • Drake, J.W.1
  • 31
    • 0034006621 scopus 로고    scopus 로고
    • Determining mutation rates in bacterial populations
    • Rosche, W. A., & Foster, P. L. Determining mutation rates in bacterial populations. Methods 20, 4-17 (2000
    • (2000) Methods , vol.20 , pp. 4-17
    • Rosche, W.A.1    Foster, P.L.2
  • 32
    • 0033828761 scopus 로고    scopus 로고
    • Estimate of the mutation rate per nucleotide in humans
    • Nachman, M. W., & Crowell, S. L. Estimate of the mutation rate per nucleotide in humans. Genetics 156, 297-304 (2000
    • (2000) Genetics , vol.156 , pp. 297-304
    • Nachman, M.W.1    Crowell, S.L.2
  • 33
    • 0029931416 scopus 로고    scopus 로고
    • Estimate of the genomic mutation rate deleterious to overall fitness in Escherichia coli
    • Kibota, T., & Lynch, M. Estimate of the genomic mutation rate deleterious to overall fitness in Escherichia coli. Nature 381, 694-696 (1996
    • (1996) Nature , vol.381 , pp. 694-696
    • Kibota, T.1    Lynch, M.2
  • 34
    • 84868214089 scopus 로고    scopus 로고
    • Estimating the human mutation rate using autozygosity in a founder population
    • Campbell, C. D., et al. Estimating the human mutation rate using autozygosity in a founder population. Nat. Genet. 44, 1277-1281 (2012
    • (2012) Nat. Genet , vol.44 , pp. 1277-1281
    • Campbell, C.D.1
  • 35
    • 84865208871 scopus 로고    scopus 로고
    • Rate of de novo mutations and the importance of father?s age to disease risk
    • Kong, A., et al. Rate of de novo mutations and the importance of father?s age to disease risk. Nature 488, 471-475 (2012
    • (2012) Nature , vol.488 , pp. 471-475
    • Kong, A.1
  • 36
    • 84902589944 scopus 로고    scopus 로고
    • Strong male bias drives germline mutation in chimpanzees
    • Venn, O., et al. Strong male bias drives germline mutation in chimpanzees. Science 344, 1272-1275 (2014
    • (2014) Science , vol.344 , pp. 1272-1275
    • Venn, O.1
  • 37
    • 84901295203 scopus 로고    scopus 로고
    • Estimation of the spontaneous mutation rate per nucleotide site in a Drosophila melanogaster full-sib family
    • Keightley, P. D., Ness, R. W., Halligan, D. L., & Haddrill, P. R. Estimation of the spontaneous mutation rate per nucleotide site in a Drosophila melanogaster full-sib family. Genetics 196, 313-320 (2014
    • (2014) Genetics , vol.196 , pp. 313-320
    • Keightley, P.D.1    Ness, R.W.2    Halligan, D.L.3    Haddrill, P.R.4
  • 38
    • 84922371114 scopus 로고    scopus 로고
    • Estimation of the spontaneous mutation rate in Heliconius melpomene
    • Keightley, P. D., et al. Estimation of the spontaneous mutation rate in Heliconius melpomene. Mol. Biol. Evol. 32, 239-243 (2015
    • (2015) Mol. Biol. Evol , vol.32 , pp. 239-243
    • Keightley, P.D.1
  • 42
    • 56449115405 scopus 로고    scopus 로고
    • The proteomic constraint and its role in molecular evolution
    • Massey, S. E. The proteomic constraint and its role in molecular evolution. Mol. Biol. Evol. 25, 2557-2565 (2008
    • (2008) Mol. Biol. Evol , vol.25 , pp. 2557-2565
    • Massey, S.E.1
  • 43
    • 23744458086 scopus 로고    scopus 로고
    • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
    • Siepel, A., et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res. 15, 1034-1050 (2005
    • (2005) Genome Res , vol.15 , pp. 1034-1050
    • Siepel, A.1
  • 44
    • 33745612972 scopus 로고    scopus 로고
    • Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison
    • Halligan, D. L., & Keightley, P. D. Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. Genome Res. 16, 875-884 (2006
    • (2006) Genome Res , vol.16 , pp. 875-884
    • Halligan, D.L.1    Keightley, P.D.2
  • 45
    • 84855455959 scopus 로고    scopus 로고
    • Rates and fitness consequences of new mutations in humans
    • Keightley, P. D. Rates and fitness consequences of new mutations in humans. Genetics 190, 295-304 (2012
    • (2012) Genetics , vol.190 , pp. 295-304
    • Keightley, P.D.1
  • 46
    • 80054973803 scopus 로고    scopus 로고
    • A high-resolution map of human evolutionary constraint using 29 mammals
    • Lindblad-Toh, K., et al. A high-resolution map of human evolutionary constraint using 29 mammals. Nature 478, 476-482 (2011
    • (2011) Nature , vol.478 , pp. 476-482
    • Lindblad-Toh, K.1
  • 47
    • 84905455429 scopus 로고    scopus 로고
    • 8.2% of the human genome is constrained: Variation in rates of turnover across functional element classes in the human lineage
    • Rands, C. M., Meader, S., Ponting, C. P., & Lunter, G. 8.2% of the human genome is constrained: variation in rates of turnover across functional element classes in the human lineage. PLoS Genet. 10, e1004525 (2014
    • (2014) Plos Genet , vol.10 , pp. e1004525
    • Rands, C.M.1    Meader, S.2    Ponting, C.P.3    Lunter, G.4
  • 49
    • 0035118974 scopus 로고    scopus 로고
    • Second-order selection in bacterial evolution: Selection acting on mutation and recombination rates in the course of adaptation
    • Tenaillon, O., Taddei, F., Radman, M., & Matic, I. Second-order selection in bacterial evolution: selection acting on mutation and recombination rates in the course of adaptation. Res. Microbiol. 152, 11-16 (2001
    • (2001) Res. Microbiol , vol.152 , pp. 11-16
    • Tenaillon, O.1    Taddei, F.2    Radman, M.3    Matic, I.4
  • 50
    • 4143091655 scopus 로고    scopus 로고
    • Evolvability is a selectable trait
    • Earl, D. J., & Deem, M. W. Evolvability is a selectable trait. Proc. Natl Acad. Sci. USA 101, 11531-11536 (2004
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 11531-11536
    • Earl, D.J.1    Deem, M.W.2
  • 51
    • 35148899681 scopus 로고    scopus 로고
    • Stress-induced mutagenesis in bacteria
    • Foster, P. L. Stress-induced mutagenesis in bacteria. Crit. Rev. Biochem. Mol. Biol. 42, 373-397 (2007
    • (2007) Crit. Rev. Biochem. Mol. Biol , vol.42 , pp. 373-397
    • Foster, P.L.1
  • 53
    • 84891432474 scopus 로고    scopus 로고
    • Genomic mutation rates that neutralize adaptive evolution and natural selection
    • Gerrish, P. J., Colato, A., & Sniegowski, P. D. Genomic mutation rates that neutralize adaptive evolution and natural selection. J. R. Soc. Interface 10, 20130329 (2013
    • (2013) J. R. Soc. Interface , vol.10 , pp. 20130329
    • Gerrish, P.J.1    Colato, A.2    Sniegowski, P.D.3
  • 54
    • 0037224621 scopus 로고    scopus 로고
    • Direct estimates of human per nucleotide mutation rates at 20 loci causing mendelian diseases
    • Kondrashov, A. S. Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseases. Hum. Mutat. 21, 12-27 (2003
    • (2003) Hum. Mutat , vol.21 , pp. 12-27
    • Kondrashov, A.S.1
  • 55
    • 75749103383 scopus 로고    scopus 로고
    • Rate molecular spectrum, and consequences of spontaneous mutations in man
    • Lynch, M. Rate, molecular spectrum, and consequences of spontaneous mutations in man. Proc. Natl Acad. Sci. USA 107, 961-968 (2009
    • (2009) Proc. Natl Acad. Sci. USA , vol.107 , pp. 961-968
    • Lynch, M.1
  • 56
    • 30744475434 scopus 로고    scopus 로고
    • The origins of eukaryotic gene structure
    • Lynch, M. The origins of eukaryotic gene structure. Mol. Biol. Evol. 23, 450-468 (2006
    • (2006) Mol. Biol. Evol , vol.23 , pp. 450-468
    • Lynch, M.1
  • 57
    • 84983616784 scopus 로고    scopus 로고
    • Evolution of the insertion-deletion mutation rate across the tree of life
    • Sung, W., et al. Evolution of the insertion-deletion mutation rate across the tree of life. G3 (Bethesda) 6, 2583-2591 (2016
    • (2016) G3 (Bethesda , vol.6 , pp. 2583-2591
    • Sung, W.1
  • 58
    • 84907964789 scopus 로고    scopus 로고
    • Genome-wide linkage-disequilibrium profiles from single individuals
    • Lynch, M., et al. Genome-wide linkage-disequilibrium profiles from single individuals. Genetics 198, 269-281 (2014
    • (2014) Genetics , vol.198 , pp. 269-281
    • Lynch, M.1
  • 59
    • 0000549642 scopus 로고
    • Natural selection and mutability
    • Leigh, E. G. Jr Natural selection and mutability. Amer. Nat. 104, 301-305 (1970
    • (1970) Amer. Nat , vol.104 , pp. 301-305
    • Leigh, E.G.1
  • 60
    • 0342657165 scopus 로고    scopus 로고
    • The rate of adaptation in asexuals
    • Orr, H. A. The rate of adaptation in asexuals. Genetics 155, 961-968 (2000
    • (2000) Genetics , vol.155 , pp. 961-968
    • Orr, H.A.1
  • 61
    • 0036741701 scopus 로고    scopus 로고
    • The effect of deleterious alleles on adaptation in asexual populations
    • Johnson, T., & Barton, N. H. The effect of deleterious alleles on adaptation in asexual populations. Genetics 162, 395-411 (2002
    • (2002) Genetics , vol.162 , pp. 395-411
    • Johnson, T.1    Barton, N.H.2
  • 62
    • 0001119463 scopus 로고
    • Essays on evolution i on the effects of selection on mutation rate
    • Sturtevant, A. H. Essays on evolution. I. On the effects of selection on mutation rate. Quart. Rev. Biol. 12, 464-476 (1937
    • (1937) Quart. Rev. Biol , vol.12 , pp. 464-476
    • Sturtevant, A.H.1
  • 63
    • 0032893933 scopus 로고    scopus 로고
    • Beneficial mutations, hitchhiking and the evolution of mutation rates in sexual populations
    • Johnson, T. Beneficial mutations, hitchhiking and the evolution of mutation rates in sexual populations. Genetics 151, 1621-1631 (1999
    • (1999) Genetics , vol.151 , pp. 1621-1631
    • Johnson, T.1
  • 64
    • 84867339877 scopus 로고    scopus 로고
    • Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
    • Lee, H., Popodi, E., Tang, H., & Foster, P. L. Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc. Natl Acad. Sci. USA 109, E2774-E2783 (2012
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. E2774-E2783
    • Lee, H.1    Popodi, E.2    Tang, H.3    Foster, P.L.4
  • 65
    • 84923948943 scopus 로고    scopus 로고
    • Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition
    • Lujan, S. A., et al. Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition. Genome Res. 24, 1751-1764 (2014
    • (2014) Genome Res , vol.24 , pp. 1751-1764
    • Lujan, S.A.1
  • 66
    • 84936850349 scopus 로고    scopus 로고
    • Asymmetric context-dependent mutation patterns revealed through mutation accumulation experiments
    • Sung, W., et al. Asymmetric context-dependent mutation patterns revealed through mutation accumulation experiments. Mol. Biol. Evol. 32, 1672-1683 (2015
    • (2015) Mol. Biol. Evol , vol.32 , pp. 1672-1683
    • Sung, W.1
  • 67
    • 84956698688 scopus 로고    scopus 로고
    • Nascent RNA folding mitigates transcription-associated mutagenesis
    • Chen, X., Yang, J. R., & Zhang, J. Nascent RNA folding mitigates transcription-associated mutagenesis. Genome Res. 26, 50-59 (2016
    • (2016) Genome Res , vol.26 , pp. 50-59
    • Chen, X.1    Yang, J.R.2    Zhang, J.3
  • 68
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Kashi, Y., & King, D. G. Simple sequence repeats as advantageous mutators in evolution. Trends Genet. 22, 253-259 (2006
    • (2006) Trends Genet , vol.22 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 69
    • 33845648557 scopus 로고    scopus 로고
    • Bacterial contingency loci: The role of simple sequence DNA repeats in bacterial adaptation
    • Moxon, R., Bayliss, C., & Hood, D. Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation. Annu. Rev. Genet. 40, 307-333 (2006
    • (2006) Annu. Rev. Genet , vol.40 , pp. 307-333
    • Moxon, R.1    Bayliss, C.2    Hood, D.3
  • 70
    • 84891633577 scopus 로고    scopus 로고
    • The role of variable DNA tandem repeats in bacterial adaptation
    • Zhou, K., Aertsen, A., & Michiels, C. W. The role of variable DNA tandem repeats in bacterial adaptation. FEMS Microbiol. Rev. 38, 119-141 (2014
    • (2014) FEMS Microbiol. Rev , vol.38 , pp. 119-141
    • Zhou, K.1    Aertsen, A.2    Michiels, C.W.3
  • 71
    • 77952988983 scopus 로고    scopus 로고
    • Genome-wide evidence for selection acting on single amino acid repeats
    • Haerty, W., & Golding, G. B. Genome-wide evidence for selection acting on single amino acid repeats. Genome Res. 20, 755-760 (2010
    • (2010) Genome Res , vol.20 , pp. 755-760
    • Haerty, W.1    Golding, G.B.2
  • 72
    • 84867021862 scopus 로고    scopus 로고
    • Amino acid repeats cause extraordinary coding sequence variation in the social amoeba Dictyostelium discoideum
    • Scala, C., et al. Amino acid repeats cause extraordinary coding sequence variation in the social amoeba Dictyostelium discoideum. PLoS ONE 7, e46150 (2012
    • (2012) Plos One , vol.7 , pp. e46150
    • Scala, C.1
  • 73
    • 80053558877 scopus 로고    scopus 로고
    • Changes in transcriptional orientation are associated with increases in evolutionary rates of enterobacterial genes
    • Lin, C. H., Lian, C. Y., Hsiung, C. A., & Chen, F. C. Changes in transcriptional orientation are associated with increases in evolutionary rates of enterobacterial genes. BMC Bioinformatics 12 (Suppl. 9), 19 (2011
    • (2011) BMC Bioinformatics , vol.12 , pp. 19
    • Lin, C.H.1    Lian, C.Y.2    Hsiung, C.A.3    Chen, F.C.4
  • 74
    • 84883214477 scopus 로고    scopus 로고
    • On the mutational topology of the bacterial genome
    • Foster, P. L., et al. On the mutational topology of the bacterial genome. G3 (Bethesda) 3, 399-407 (2013
    • (2013) G3 (Bethesda , vol.3 , pp. 399-407
    • Foster, P.L.1
  • 75
    • 84928236984 scopus 로고    scopus 로고
    • Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair deficient Pseudomonas fluorescens ATCC948
    • Long, H., et al. Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair deficient Pseudomonas fluorescens ATCC948. Genome Biol. Evol. 7, 262-271 (2015
    • (2015) Genome Biol. Evol , vol.7 , pp. 262-271
    • Long, H.1
  • 76
    • 80052919408 scopus 로고    scopus 로고
    • Mutation rates across budding yeast chromosome VI are correlated with replication timing
    • Lang, G. I., & Murray, A. W. Mutation rates across budding yeast chromosome VI are correlated with replication timing. Genome Biol. Evol. 3, 799-811 (2011
    • (2011) Genome Biol. Evol , vol.3 , pp. 799-811
    • Lang, G.I.1    Murray, A.W.2
  • 77
    • 63449141981 scopus 로고    scopus 로고
    • Human mutation rate associated with DNA replication timing
    • Stamatoyannopoulos, J. A., et al. Human mutation rate associated with DNA replication timing. Nat. Genet. 41, 393-395 (2009
    • (2009) Nat. Genet , vol.41 , pp. 393-395
    • Stamatoyannopoulos, J.A.1
  • 78
    • 84863245662 scopus 로고    scopus 로고
    • Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes
    • Chen, X., et al. Nucleosomes suppress spontaneous mutations base-specifically in eukaryotes. Science 335, 1235-1238 (2012
    • (2012) Science , vol.335 , pp. 1235-1238
    • Chen, X.1
  • 81
    • 84870627323 scopus 로고    scopus 로고
    • Genomic evidence for elevated mutation rates in highly expressed genes
    • Park, C., Qian, W., & Zhang, J. Genomic evidence for elevated mutation rates in highly expressed genes. EMBO Rep. 13, 1123-1129 (2012
    • (2012) EMBO Rep , vol.13 , pp. 1123-1129
    • Park, C.1    Qian, W.2    Zhang, J.3
  • 82
    • 84907482328 scopus 로고    scopus 로고
    • Yeast mutation accumulation experiment supports elevated mutation rates at highly transcribed sites
    • Chen, X., & Zhang, J. Yeast mutation accumulation experiment supports elevated mutation rates at highly transcribed sites. Proc. Natl Acad. Sci. USA 111, E4062 (2014
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. E4062
    • Chen, X.1    Zhang, J.2
  • 83
    • 0037380022 scopus 로고    scopus 로고
    • Transcription-associated mutational asymmetry in mammalian evolution
    • Green, P., et al. Transcription-associated mutational asymmetry in mammalian evolution. Nat. Genet. 33, 514-517 (2003
    • (2003) Nat. Genet , vol.33 , pp. 514-517
    • Green, P.1
  • 84
    • 48949094603 scopus 로고    scopus 로고
    • Transcription induces strand-specific mutations at the 5? End of human genes
    • Polak, P., & Arndt, P. F. Transcription induces strand-specific mutations at the 5? end of human genes. Genome Res. 18, 1216-1223 (2008
    • (2008) Genome Res , vol.18 , pp. 1216-1223
    • Polak, P.1    Arndt, P.F.2
  • 85
    • 84896512652 scopus 로고    scopus 로고
    • Stalled transcription complexes promote DNA repair at a distance
    • Haines, N. M., Kim, Y. I., Smith, A. J., & Savery, N. J. Stalled transcription complexes promote DNA repair at a distance. Proc. Natl Acad. Sci. USA 111, 4037-4042 (2014
    • (2014) Proc. Natl Acad. Sci. USA , vol.111 , pp. 4037-4042
    • Haines, N.M.1    Kim, Y.I.2    Smith, A.J.3    Savery, N.J.4
  • 86
    • 0029027991 scopus 로고
    • Synonymous substitution rates in enterobacteria
    • Eyre-Walker, A., & Bulmer, M. Synonymous substitution rates in enterobacteria. Genetics 140, 1407-1412 (1995
    • (1995) Genetics , vol.140 , pp. 1407-1412
    • Eyre-Walker, A.1    Bulmer, M.2
  • 87
    • 84879365232 scopus 로고    scopus 로고
    • No gene-specific optimization of mutation rate in Escherichia coli
    • Chen, X., & Zhang, J. No gene-specific optimization of mutation rate in Escherichia coli. Mol. Biol. Evol. 30, 1559-1562 (2013
    • (2013) Mol. Biol. Evol , vol.30 , pp. 1559-1562
    • Chen, X.1    Zhang, J.2
  • 89
    • 84876188716 scopus 로고    scopus 로고
    • Transcription-replication encounters, consequences and genomic instability
    • Helmrich, A., Ballarino, M., Nudler, E., & Tora, L. Transcription-replication encounters, consequences and genomic instability. Nat. Struct. Mol. Biol. 20, 412-418 (2013
    • (2013) Nat. Struct. Mol. Biol , vol.20 , pp. 412-418
    • Helmrich, A.1    Ballarino, M.2    Nudler, E.3    Tora, L.4
  • 90
    • 0032543992 scopus 로고    scopus 로고
    • Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome
    • Fijalkowska, I. J., Jonczyk, P., Tkaczyk, M. M., Bialoskorska, M., & Schaaper, R. M. Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome. Proc. Natl Acad. Sci. USA 95, 10020-10025 (1998
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 10020-10025
    • Fijalkowska, I.J.1    Jonczyk, P.2    Tkaczyk, M.M.3    Bialoskorska, M.4    Schaaper, R.M.5
  • 91
    • 34248394295 scopus 로고    scopus 로고
    • Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis
    • Wang, J. D., Berkmen, M. B., & Grossman, A. D. Genome-wide coorientation of replication and transcription reduces adverse effects on replication in Bacillus subtilis. Proc. Natl Acad. Sci. USA 104, 5608-5613 (2007
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 5608-5613
    • Wang, J.D.1    Berkmen, M.B.2    Grossman, A.D.3
  • 92
    • 76749094639 scopus 로고    scopus 로고
    • Co orientation of replication and transcription preserves genome integrity
    • Srivatsan, A., Tehranchi, A., MacAlpine, D. M., & Wang, J. D. Co orientation of replication and transcription preserves genome integrity. PLoS Genet. 6, e1000810 (2010
    • (2010) Plos Genet , vol.6 , pp. e1000810
    • Srivatsan, A.1    Tehranchi, A.2    MacAlpine, D.M.3    Wang, J.D.4
  • 93
    • 3142679507 scopus 로고    scopus 로고
    • The replication-related organization of bacterial genomes
    • Rocha, E. P. The replication-related organization of bacterial genomes. Microbiology 150, 1609-1627 (2004
    • (2004) Microbiology , vol.150 , pp. 1609-1627
    • Rocha, E.P.1
  • 94
    • 0036709941 scopus 로고    scopus 로고
    • Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?
    • Rocha, E. P. Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes? Trends Microbiol. 10, 393-395 (2002
    • (2002) Trends Microbiol , vol.10 , pp. 393-395
    • Rocha, E.P.1
  • 96
    • 77953212314 scopus 로고    scopus 로고
    • The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution
    • Paramecium Post-Genomics Consortium
    • Gout, J. F., Kahn, D., Duret, L., & Paramecium Post-Genomics Consortium. The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution. PLoS Genet. 6, e1000944 (2010
    • (2010) Plos Genet , vol.6 , pp. e1000944
    • Gout, J.F.1    Kahn, D.2    Duret, L.3
  • 97
    • 84874250754 scopus 로고    scopus 로고
    • Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly
    • Park, C., Chen, X., Yang, J. R., & Zhang, J. Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly. Proc. Natl Acad. Sci. USA 110, E678-E686 (2013
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. E678-E686
    • Park, C.1    Chen, X.2    Yang, J.R.3    Zhang, J.4
  • 98
    • 84892535526 scopus 로고    scopus 로고
    • Why are genes encoded on the lagging strand of the bacterial genome?
    • Chen, X., & Zhang, J. Why are genes encoded on the lagging strand of the bacterial genome? Genome Biol. Evol. 5, 2436-2439 (2013
    • (2013) Genome Biol. Evol , vol.5 , pp. 2436-2439
    • Chen, X.1    Zhang, J.2
  • 99
    • 0035348523 scopus 로고    scopus 로고
    • Evolution rates of genes on leading and lagging DNA strands
    • Szczepanik, D., et al. Evolution rates of genes on leading and lagging DNA strands. J. Mol. Evol. 52, 426-433 (2001
    • (2001) J. Mol. Evol , vol.52 , pp. 426-433
    • Szczepanik, D.1
  • 100
    • 84863717994 scopus 로고    scopus 로고
    • The evolution of low mutation rates in experimental mutator populations of saccharomyces cerevisiae
    • McDonald, M. J., Hsieh, Y. Y., Yu, Y. H., Chang, S. L., & Leu, J. Y. The evolution of low mutation rates in experimental mutator populations of Saccharomyces cerevisiae. Curr. Biol. 22, 1235-1240 (2012
    • (2012) Curr. Biol , vol.22 , pp. 1235-1240
    • McDonald, M.J.1    Hsieh, Y.Y.2    Yu, Y.H.3    Chang, S.L.4    Leu, J.Y.5
  • 101
    • 84884200756 scopus 로고    scopus 로고
    • Normal mutation rate variants arise in a mutator (mut S) Escherichia coli population
    • Turrientes, M. C., et al. Normal mutation rate variants arise in a mutator (mut S) Escherichia coli population. PLoS ONE 8, e72963 (2013
    • (2013) Plos One , vol.8 , pp. e72963
    • Turrientes, M.C.1
  • 102
    • 84871981698 scopus 로고    scopus 로고
    • Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load
    • Wielgoss, S., et al. Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proc. Natl Acad. Sci. USA 110, 222-227 (2013
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 222-227
    • Wielgoss, S.1
  • 103
    • 84876442276 scopus 로고    scopus 로고
    • Emergence of DNA polymerase antimutators that escape error-induced extinction in yeast
    • Williams, L. N., Herr, A. J., & Preston, B. D. Emergence of DNA polymerase antimutators that escape error-induced extinction in yeast. Genetics 193, 751-770 (2013
    • (2013) Genetics , vol.193 , pp. 751-770
    • Williams, L.N.1    Herr, A.J.2    Preston, B.D.3
  • 104
    • 84979941565 scopus 로고    scopus 로고
    • Mutation and human exceptionalism: Our future genetic load
    • Lynch, M. Mutation and human exceptionalism: our future genetic load. Genetics 202, 869-875 (2016
    • (2016) Genetics , vol.202 , pp. 869-875
    • Lynch, M.1
  • 105
    • 84907737648 scopus 로고    scopus 로고
    • Genome sequencing of normal cells reveals developmental lineages and mutational processes
    • Behjati, S., et al. Genome sequencing of normal cells reveals developmental lineages and mutational processes. Nature 513, 422-425 (2014
    • (2014) Nature , vol.513 , pp. 422-425
    • Behjati, S.1
  • 106
    • 33646397599 scopus 로고    scopus 로고
    • Evolution of mutation rates in bacteria
    • Denamur, E., & Matic, I. Evolution of mutation rates in bacteria. Mol. Microbiol. 60, 820-827 (2006
    • (2006) Mol. Microbiol , vol.60 , pp. 820-827
    • Denamur, E.1    Matic, I.2
  • 107
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation selection balance and the effect of linkage on positive selection
    • Desai, M. M., & Fisher, D. S. Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics 176, 1759-1798 (2007
    • (2007) Genetics , vol.176 , pp. 1759-1798
    • Desai, M.M.1    Fisher, D.S.2
  • 108
    • 85027949831 scopus 로고    scopus 로고
    • Experimental evolution and the dynamics of genomic mutation rate modifiers
    • Raynes, Y., & Sniegowski, P. D. Experimental evolution and the dynamics of genomic mutation rate modifiers. Heredity 113, 375-380 (2014
    • (2014) Heredity , vol.113 , pp. 375-380
    • Raynes, Y.1    Sniegowski, P.D.2
  • 109
    • 0035970874 scopus 로고    scopus 로고
    • Costs and benefits of high mutation rates: Adaptive evolution of bacteria in the mouse gut
    • Giraud, A., et al. Costs and benefits of high mutation rates: adaptive evolution of bacteria in the mouse gut. Science 291, 2606-2608 (2001
    • (2001) Science , vol.291 , pp. 2606-2608
    • Giraud, A.1
  • 110
    • 0036274037 scopus 로고    scopus 로고
    • The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: Molecular characterization of naturally occurring mutants
    • Oliver, A., Baquero, F., & Blázquez, J. The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: molecular characterization of naturally occurring mutants. Mol. Microbiol. 43, 1641-1650 (2002
    • (2002) Mol. Microbiol , vol.43 , pp. 1641-1650
    • Oliver, A.1    Baquero, F.2    Blázquez, J.3
  • 111
    • 37249025333 scopus 로고    scopus 로고
    • Coevolution with viruses drives the evolution of bacterial mutation rates
    • Pal, C., Maciá, M. D., Oliver, A., Schachar, I., & Buckling, A. Coevolution with viruses drives the evolution of bacterial mutation rates. Nature 450, 1079-1081 (2007
    • (2007) Nature , vol.450 , pp. 1079-1081
    • Pal, C.1    Maciá, M.D.2    Oliver, A.3    Schachar, I.4    Buckling, A.5
  • 112
    • 84925264691 scopus 로고    scopus 로고
    • Evidence for recent, population-specific evolution of the human mutation rate
    • Harris, K. Evidence for recent, population-specific evolution of the human mutation rate. Proc. Natl Acad. Sci. USA 112, 3439-3444 (2015
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 3439-3444
    • Harris, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.