Why highly expressed proteins evolve slowly

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 40, 2005, Pages 14338-14343

  Drummond, D Allan ^a   Bloom, Jesse D ^b   Adami, Christoph ^a,c   Wilke, Claus O ^a,c   Arnold, Frances H ^b  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b California Institute of Technology   (United States)

^c KECK GRADUATE INSTITUTE   (United States)

Author keywords

Evolutionary rate; Gene duplication; Protein misfolding; Translation errors; Yeast

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; FUNGUS; GENE DUPLICATION; GENOME; GENOME ANALYSIS; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FOLDING; SACCHAROMYCES CEREVISIAE;

COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; EVOLUTION, MOLECULAR; FLUORESCENCE; GENE EXPRESSION; GENES, DUPLICATE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHYLOGENY; PROTEIN BIOSYNTHESIS; PROTEIN FOLDING; PROTEINS; SACCHAROMYCES CEREVISIAE; SELECTION (GENETICS);

SACCHAROMYCES CEREVISIAE;

EID: 26444621352     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0504070102     Document Type: Article

References (50)

1. Wall, D. P., Fraser, H. B. & Hirsh, A. E. (2003) Bioinformatics 19, 1710-1711.
2. Graur, D. & Li, W.-H. (2000) Fundamentals of Molecular Evolution (Sinauer. Sunderland, MA).
3. Zuekerkandl, E. (1976) J. Mol. Evol. 7, 167-183.
4. Fraser, H. B., Hirsh, A. E., Steinmetz, L. M., Scharfe, C. & Feldman, M. W. (2002) Science 296, 750-752.
5. Pal, C., Papp, B. & Hurst, L. D. (2001) Genetics 158, 927-931.
6. Rocha, E. P. & Danchin, A. (2004) Mol. Biol. Evol. 21, 108-116.
7. Hurst, L. D. & Smith, N. G. (1999) Curr. Biol. 9, 747-750.
8. Jordan, I. K., Rogozin, I. B., Wolf, Y. I. & Kounin, E. V. (2002) Genome Res. 12, 962-968.
9. Hirsh, A. E. & Fraser, H. B. (2001) Nature 411, 1046-1049.
10. Wall, D. P., Hirsh, A. E., Fraser, H. B., Kumm, J., Giaever, G., Eisen, M. B. & Feldman, M. W. (2005) Proc. Natl. Acad. Sci. USA 102, 5483-5488.
11. Herbeck, J. T., Wall, D. P. & Wernegreen, J. J. (2003) Microbiology 149, 2585-2596.
12. Sharp, P. M. (1991) J. Mol. Evol. 33, 23-33.
13. Duret, L. & Mouchiroud, D. (2000) Mol. Biol. Evol. 17, 68-74.
14. Subramanian, S. & Kumar, S. (2004) Genetics 168, 373-381.
15. Bloom, J. D. & Adami, C. (2003) BMC Evol. Biol. 3, 21.
16. Pal, C., Papp, B. & Hurst, L. D. (2003) Nature 421, 496-497.
17. Hirsh, A. E. & Fraser, H. B. (2003) Nature 421, 497-498.
18. Akashi, H. (2001) Curr. Opin. Genet. Dev. 11, 660-666.
19. Akashi, H. (2003) Genetics 164, 1291-1303.
20. Marais, G., Dumazet-Loso, T., Tautz, D. & Charlesworth, B. (2004) J. Mol. Evol. 59, 771-779.
21. Kellis, M., Birren, B. W. & Lander, E. S. (2004) Nature 428, 617-624.
22. Seoighe, C. & Wolfe, K. H. (1999) Curr. Opin. Microbiol. 2, 548-554.
23. Ohno, S. (1970) Evolution by Gene Duplication (Allen & Unwin, London).
24. Ghaemmaghami, S., Huh, W. K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K. & Weissman, J. S. (2003) Nature 425, 737-741.
25. Kcllis, M., Patterson, N., Endrizzi, M., Birren, B. & Lander, E. S. (2003) Nature 423, 241-254.
26. Holstcge, F. C., Jennings, E. G., Wyrick, J. J., Lee, T. I., Hengartner, C. J., Green, M. R., Goluh, T. R., Lander, E. S. & Young, R. A. (1998) Cell 95, 717-728.
27. Altschul, S. F., Maddun, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
28. Cho, R. J., Campbell, M. J., Winzeler, E. A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T. G., Gabrielian, A. E., Landsman, D., Lockhart, D. J. & Davis, R. W. (1998) Mol. Cell 2, 65-73.
29. Coghlan, A. & Wolfe, K. H. (2000) Yeast 16, 1131-1145.
30. Sharp, P. M. & Li, W. H. (1987) Nucleic Acids Res. 15, 1281-1295.
31. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680.
32. Yang, Z. H. (1997) Comput. Appl. Biosci. 13, 555-556.
33. Ihaka, R. & Gentleman, R. (1996). J. Comput. Graph. Stat. 5, 299-314.
34. Akashi, H. (1994) Genetics 136, 927-935.
35. Parker, J. (1989) Microbiol. Rev. 53, 273-298.
36. Goldherg, A. L. (2003) Nature 426, 895-899.
37. Bloom, J. D., Silberg, J. J., Wilke, C. O., Drummond, D. A., Adami, C. & Arnold, F. H. (2005) Proc. Natl. Acad. Sci. USA 102, 606-611.
38. Ellis, R. J. & Pinheiro, T. J. (2002) Nature 416, 483-484.
39. Dong, H., Nilsson, L. & Kurland, C. G. (1995) J. Bacteriol. 177, 1497-1504.
40. Greenbaum, D., Colangelo, C., Williams, K. & Gerstein, M. (2003) Genome Biol. 4, 117.
41. Benjamini, Y. & Hochberg, Y. (1995). J. R. Stat. Soc. B 57, 289-300.
42. Gu, Z., Steinmetz, L. M., Gu, X., Scharfe, C., Davis, R. W. & Li, W. H. (2003) Nature 421, 63-66.
43. Pal, C., Papp, B. & Hurst, L. D. (2001) Mol. Biol. Evol. 18, 2323-2326.
44. Drummond, D. A., Raval, A. & Wilke, C. O. (2005) arXiv: q-bio.PE/0506011.
45. Guo, H. H., Choe, J. & Loeb, L. A. (2004) Proc. Natl. Acad. Sci. USA 101, 9205-9210.
46. Bucciantini, M., Giannoni, E., Chili, F., Baroni, F., Formigli, L., Zurdo, J., Taddei, N., Rampuni, G., Dobson, C. M. & Stefani, M. (2002) Nature 416, 507-511.
47. Precup, J. & Parker, J. (1987) J. Biol. Chem. 262, 11351-11355.
48. Spreitzer, R. J. (1993) Annu. Rev. Plant Physiol. Plant Mol. Biol. 44, 411-434.
49. Rokas, A., Williams, B. L., King, N. & Carrol, S. B. (2003) Nature 425, 798-804.
50. Kurtzman, C. P. & Rubnett, C. J. (2003) FEMS Yeast Res. 3, 417-432.