메뉴 건너뛰기




Volumn 150, Issue 5, 2004, Pages 1413-1426

Quantitative relationships for specific growth rates and micromolecular compositions of Mycobacterium tuberculosis, Streptomyces coelicolor A3(2) and Escherichia coli B/r: An integrative theoretical approach

Author keywords

[No Author keywords available]

Indexed keywords

AMINOACYL TRANSFER RNA; BACTERIAL DNA; ELONGATION FACTOR TU; RIBOSOME RNA; RNA PRECURSOR;

EID: 2942565809     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.26560-0     Document Type: Article
Times cited : (86)

References (45)
  • 1
    • 0001211310 scopus 로고
    • Response of cultured macrophages to Mycobacterium tuberculosis, with observations on fusion of lysosomes with phagosomes
    • Armstrong, J. A. & D'Arcy-Hart, P. (1971). Response of cultured macrophages to Mycobacterium tuberculosis, with observations on fusion of lysosomes with phagosomes. J Exp Med 134, 713-740.
    • (1971) J. Exp. Med. , vol.134 , pp. 713-740
    • Armstrong, J.A.1    D'Arcy-Hart, P.2
  • 2
    • 0037046560 scopus 로고    scopus 로고
    • Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
    • & 40 other authors
    • Bentley, S. D., Chater, K. F., Cerdeño-Tárraga, A.-M. & 40 other authors (2002). Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417, 141-147.
    • (2002) Nature , vol.417 , pp. 141-147
    • Bentley, S.D.1    Chater, K.F.2    Cerdeño-Tárraga, A.-M.3
  • 3
    • 0022531262 scopus 로고
    • Mycobacteria possess a surprisingly small number of ribosomal RNA genes in relation to the size of their genome
    • Bercovier, H., Kafri, O. & Sela, S. (1986). Mycobacteria possess a surprisingly small number of ribosomal RNA genes in relation to the size of their genome. Biochem Biophys Res Commun 136, 1136-1141.
    • (1986) Biochem. Biophys. Res. Commun. , vol.136 , pp. 1136-1141
    • Bercovier, H.1    Kafri, O.2    Sela, S.3
  • 4
    • 0037162469 scopus 로고    scopus 로고
    • Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
    • Bernstein, J. A., Khodursky, A. B., Lin, P.-S., Lin-Chao, S. & Cohen, S. N. (2002). Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99, 9697-9702.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 9697-9702
    • Bernstein, J.A.1    Khodursky, A.B.2    Lin, P.-S.3    Lin-Chao, S.4    Cohen, S.N.5
  • 5
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • & 14 other authors
    • Blattner, F. R., Plunket, G., III, Bloch, C. A. & 14 other authors (1997). The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1462.
    • (1997) Science , vol.277 , pp. 1453-1462
    • Blattner, F.R.1    Plunket III, G.2    Bloch, C.A.3
  • 6
    • 0000640710 scopus 로고    scopus 로고
    • Modulation of chemical composition and other parameters of the cell growth rate
    • 2nd edn, Edited by F. C. Neidhardt and others. Washington DC: American Society for Microbiology
    • Bremer, H. & Dennis, P. P. (1996). Modulation of chemical composition and other parameters of the cell growth rate. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn, pp. 1553-1568. Edited by F. C. Neidhardt and others. Washington DC: American Society for Microbiology.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 1553-1568
    • Bremer, H.1    Dennis, P.P.2
  • 7
    • 0001651475 scopus 로고    scopus 로고
    • Genomics, biology, and evolution of the Mycobacterium tuberculosis complex
    • Edited by G. F. Hatfull & W. R. Jacobs, Jr. Washington, DC: American Society for Microbiology
    • Brosch, R., Gordon, S. V., Eiglmeier, K., Garnier, T., Tekaia, F., Yeramian, E. & Cole, S. T. (2000). Genomics, biology, and evolution of the Mycobacterium tuberculosis complex. In Molecular Genetics of Mycobacteria, pp. 19-36. Edited by G. F. Hatfull & W. R. Jacobs, Jr. Washington, DC: American Society for Microbiology.
    • (2000) Molecular Genetics of Mycobacteria , pp. 19-36
    • Brosch, R.1    Gordon, S.V.2    Eiglmeier, K.3    Garnier, T.4    Tekaia, F.5    Yeramian, E.6    Cole, S.T.7
  • 8
    • 0037133653 scopus 로고    scopus 로고
    • A new evolutionary scenario for the Mycobacterium tuberculosis complex
    • & 12 other authors
    • Brosch, R., Gordon, S. V., Marmiesse, M. & 12 other authors (2002). A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc Natl Acad Sci U S A 99, 3684-3689.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 3684-3689
    • Brosch, R.1    Gordon, S.V.2    Marmiesse, M.3
  • 10
    • 0000539718 scopus 로고
    • Effect of environmental temperatures on infection with Mycobacterium marinum (balnei) of mice and a number of poikilothermic species
    • Clark, H. F. & Shepard, C. C. (1963). Effect of environmental temperatures on infection with Mycobacterium marinum (balnei) of mice and a number of poikilothermic species. J Bacteriol 86, 1057-1069.
    • (1963) J. Bacteriol. , vol.86 , pp. 1057-1069
    • Clark, H.F.1    Shepard, C.C.2
  • 11
    • 0032508046 scopus 로고    scopus 로고
    • Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
    • & 39 other authors
    • Cole, S. T., Brosch, R., Parkhill, J. & 39 other authors (1998). Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393, 537-544.
    • (1998) Nature , vol.393 , pp. 537-544
    • Cole, S.T.1    Brosch, R.2    Parkhill, J.3
  • 12
    • 0027432869 scopus 로고
    • Depletion of functional ribosomal RNA operons in Escherichia coli causes increased expression of the remaining intact copies
    • Condon, C., French, S., Squires, C. & Squires, C. L. (1993). Depletion of functional ribosomal RNA operons in Escherichia coli causes increased expression of the remaining intact copies. EMBO J 12, 4305-4315.
    • (1993) EMBO J. , vol.12 , pp. 4305-4315
    • Condon, C.1    French, S.2    Squires, C.3    Squires, C.L.4
  • 13
    • 0029048945 scopus 로고
    • rRNA operon multiplicity in Escherichia coli and the physiological implications of rrn inactivation
    • Condon, C., Liveris, D., Squires, C., Schwartz, I. & Squires, C. L. (1995). rRNA operon multiplicity in Escherichia coli and the physiological implications of rrn inactivation. J Bacteriol 177, 4152-4156.
    • (1995) J. Bacteriol. , vol.177 , pp. 4152-4156
    • Condon, C.1    Liveris, D.2    Squires, C.3    Schwartz, I.4    Squires, C.L.5
  • 14
    • 0037352496 scopus 로고    scopus 로고
    • Correlation of the rate of protein synthesis and the third power of the RNA: Protein ratio in Escherichia coli and Mycobacterium tuberculosis
    • Cox, R. A. (2003). Correlation of the rate of protein synthesis and the third power of the RNA: protein ratio in Escherichia coli and Mycobacterium tuberculosis. Microbiology 149, 729-737.
    • (2003) Microbiology , vol.149 , pp. 729-737
    • Cox, R.A.1
  • 15
    • 0028084783 scopus 로고
    • Restriction fragment length polymorphism of 16S rRNA genes in the differentiation of fast-growing mycobacterial species
    • Domenech, P., Menendez, M. C. & Garcia, M. J. (1994). Restriction fragment length polymorphism of 16S rRNA genes in the differentiation of fast-growing mycobacterial species. FEMS Microbiol Lett 116, 19-21.
    • (1994) FEMS Microbiol. Lett. , vol.116 , pp. 19-21
    • Domenech, P.1    Menendez, M.C.2    Garcia, M.J.3
  • 16
    • 0033553440 scopus 로고    scopus 로고
    • A coat protein on phagosomes involved in the intracellular survival of mycobacteria
    • Ferrari, G., Langen, H., Naito, M. & Pieters, J. (1999). A coat protein on phagosomes involved in the intracellular survival of mycobacteria. Cell 911, 435-447.
    • (1999) Cell , vol.911 , pp. 435-447
    • Ferrari, G.1    Langen, H.2    Naito, M.3    Pieters, J.4
  • 17
    • 0032783728 scopus 로고    scopus 로고
    • Effects of growth conditions on the expression of mycobacterial murA and tyrS genes and contributions of their transcripts to precursor rRNA synthesis
    • Gonzalez-y-Merchand, J. A., Colston, M. J. & Cox, R. A. (1999). Effects of growth conditions on the expression of mycobacterial murA and tyrS genes and contributions of their transcripts to precursor rRNA synthesis. J Bacteriol 181, 4617-4627.
    • (1999) J. Bacteriol. , vol.181 , pp. 4617-4627
    • Gonzalez-y-Merchand, J.A.1    Colston, M.J.2    Cox, R.A.3
  • 18
    • 0033368475 scopus 로고    scopus 로고
    • Messenger RNA stability and its role in the control of gene expression in bacteria and phages
    • Grunberg-Manago, M. (1999). Messenger RNA stability and its role in the control of gene expression in bacteria and phages. Annu Rev Genet 33, 193-227.
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 193-227
    • Grunberg-Manago, M.1
  • 19
    • 0017332937 scopus 로고
    • Rate of ribonucleic acid chain growth in Mycobacterium tuberculosis H37Rv
    • Harshey, R. M. & Ramakrishnan, T. (1977). Rate of ribonucleic acid chain growth in Mycobacterium tuberculosis H37Rv. J Bacteriol 129, 616-622.
    • (1977) J. Bacteriol. , vol.129 , pp. 616-622
    • Harshey, R.M.1    Ramakrishnan, T.2
  • 20
    • 0000549939 scopus 로고    scopus 로고
    • Timing of synthetic activities in the cell cycle
    • 2nd edn, Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology
    • Helmstetter, C. E. (1996). Timing of synthetic activities in the cell cycle. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn, pp. 1627-1639. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 1627-1639
    • Helmstetter, C.E.1
  • 21
    • 0014413374 scopus 로고
    • DNA synthesis during the division cycle of rapidly growing E. coli B/r
    • Helmstetter, C. E. & Cooper, S. (1968). DNA synthesis during the division cycle of rapidly growing E. coli B/r. J Mol Biol 31, 507-518.
    • (1968) J. Mol. Biol. , vol.31 , pp. 507-518
    • Helmstetter, C.E.1    Cooper, S.2
  • 23
    • 0001083754 scopus 로고    scopus 로고
    • Effect of temperature, pressure, pH, and osmotic stress on growth
    • 2nd edn, Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology
    • Ingraham, J. L. & Marr, J. L. (1996). Effect of temperature, pressure, pH, and osmotic stress on growth. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn, pp. 1570-1578. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 1570-1578
    • Ingraham, J.L.1    Marr, J.L.2
  • 25
    • 2942576797 scopus 로고
    • PhD thesis, University of Copenhagen
    • Jacobsen, H. (1974). PhD thesis, University of Copenhagen.
    • (1974)
    • Jacobsen, H.1
  • 26
    • 0037370460 scopus 로고    scopus 로고
    • Life after transcription - Revisiting the fate of messenger RNA
    • Khodursky, A. R. & Bernstein, J. A. (2003). Life after transcription - revisiting the fate of messenger RNA. Trends Genet 19, 113-115.
    • (2003) Trends Genet. , vol.19 , pp. 113-115
    • Khodursky, A.R.1    Bernstein, J.A.2
  • 27
    • 0024974056 scopus 로고
    • RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes
    • Krummel, B. & Chamberlin, M. J. (1989). RNA chain initiation by Escherichia coli RNA polymerase. Structural transitions of the enzyme in early ternary complexes. Biochemistry 28, 7829-7842.
    • (1989) Biochemistry , vol.28 , pp. 7829-7842
    • Krummel, B.1    Chamberlin, M.J.2
  • 28
    • 0036047092 scopus 로고    scopus 로고
    • Function in Escherichia coli of the non-catalytic part of RNase E: Role in the degradation of ribosome-free mRNA
    • Leroy, A., Vanzo, N. F., Sousa, S., Dreyfus, M. & Carpousis, A. J. (2002). Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA. Mol Microbiol 45, 1231-1243.
    • (2002) Mol. Microbiol. , vol.45 , pp. 1231-1243
    • Leroy, A.1    Vanzo, N.F.2    Sousa, S.3    Dreyfus, M.4    Carpousis, A.J.5
  • 29
    • 0014960630 scopus 로고
    • Visualization of bacterial genes in action
    • Miller, O. L., Jr, Hamkalo, B. A. & Thomas, C. A., Jr (1970). Visualization of bacterial genes in action. Science 169, 392-395.
    • (1970) Science , vol.169 , pp. 392-395
    • Miller Jr., O.L.1    Hamkalo, B.A.2    Thomas Jr., C.A.3
  • 30
    • 0002437481 scopus 로고    scopus 로고
    • The enteric bacterial cell and the age of bacteria
    • 2nd edn, Edited by F. C. Neidhart and others. Washington, DC: American Society for Microbiology
    • Neidhardt, F. C. (1996). The enteric bacterial cell and the age of bacteria. In Escherichia coli and Salmonella: Cellular and Molecular Biology. 2nd edn, pp. 1-3. Edited by F. C. Neidhart and others. Washington, DC: American Society for Microbiology.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 1-3
    • Neidhardt, F.C.1
  • 31
    • 0004576260 scopus 로고    scopus 로고
    • Ribosomes
    • 2nd edn, Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology
    • Noller, H. E. & Nomura, M. (1996). Ribosomes. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn, pp. 167-186. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology , pp. 167-186
    • Noller, H.E.1    Nomura, M.2
  • 32
    • 0242400018 scopus 로고    scopus 로고
    • Degradation of mRNA in bacteria: Emergence of ubiquitous features
    • Régnier, P. & Arraiano, C. M. (2000). Degradation of mRNA in bacteria: emergence of ubiquitous features. BioEssays 22, 235-244.
    • (2000) BioEssays , vol.22 , pp. 235-244
    • Régnier, P.1    Arraiano, C.M.2
  • 33
    • 0001140586 scopus 로고
    • Dependence on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium
    • Schaechter, E., Maaløe, O. & Kjeldgaard, N. O. (1958). Dependence on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium. J Gen Microbiol 19, 592-606.
    • (1958) J. Gen. Microbiol. , vol.19 , pp. 592-606
    • Schaechter, E.1    Maaløe, O.2    Kjeldgaard, N.O.3
  • 34
    • 0029804432 scopus 로고    scopus 로고
    • Growth rate control of protein and nucleic acids in Streptomyces coelicolor A3(2) and Escherichia coli B/r
    • Shahab, N., Flett, F., Oliver, S. G. & Butler, P. R. (t996). Growth rate control of protein and nucleic acids in Streptomyces coelicolor A3(2) and Escherichia coli B/r. Microbiology 142, 1927-1935.
    • (1996) Microbiology , vol.142 , pp. 1927-1935
    • Shahab, N.1    Flett, F.2    Oliver, S.G.3    Butler, P.R.4
  • 35
    • 0000168949 scopus 로고
    • The experimental disease that follows the injection of human leprosy bacilli into the footpads of mice
    • Shepard, C. C. (1960). The experimental disease that follows the injection of human leprosy bacilli into the footpads of mice. J Exp Med 112, 445-454.
    • (1960) J. Exp. Med. , vol.112 , pp. 445-454
    • Shepard, C.C.1
  • 36
    • 2942609922 scopus 로고
    • The operon: On its third anniversary
    • Stent, G. S. (1964). The operon: on its third anniversary. Science 144, 816-820.
    • (1964) Science , vol.144 , pp. 816-820
    • Stent, G.S.1
  • 37
    • 1842561506 scopus 로고    scopus 로고
    • Tuberculosis: A problem with persistence
    • Stewart, G. R., Robertson, B. D. & Young, D. B. (2003). Tuberculosis: a problem with persistence. Nat Rev 1, 97-105.
    • (2003) Nat. Rev. , vol.1 , pp. 97-105
    • Stewart, G.R.1    Robertson, B.D.2    Young, D.B.3
  • 38
    • 0031822553 scopus 로고    scopus 로고
    • '98 Escherichia coli SWISS-2DPAGE database update
    • & 14 other authors
    • Tonella, L., Walsh, B. J., Sanchez, J. C. & 14 other authors (1998). '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19, 1960-1971.
    • (1998) Electrophoresis , vol.19 , pp. 1960-1971
    • Tonella, L.1    Walsh, B.J.2    Sanchez, J.C.3
  • 39
    • 0031943169 scopus 로고    scopus 로고
    • Differentiation of Mycobacterium ulcerans, M. marinum, and M. haemophilum: Mapping of their relationships to M. tuberculosis by fatty acid profile analysis, DNA-DNA hybridization and 16S rRNA gene sequence analysis
    • Tonjum, T., Welty, D. B., Jantzen, E. & Small, P. L. (1998). Differentiation of Mycobacterium ulcerans, M. marinum, and M. haemophilum: mapping of their relationships to M. tuberculosis by fatty acid profile analysis, DNA-DNA hybridization and 16S rRNA gene sequence analysis. J Clin Microbol 35, 918-925.
    • (1998) J. Clin. Microbol. , vol.35 , pp. 918-925
    • Tønjum, T.1    Welty, D.B.2    Jantzen, E.3    Small, P.L.4
  • 40
    • 0032780147 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis rrn promoters: Differential usage and growth rate-dependent control
    • Verma, A., Sampla, A. K. & Tyagi, J. S. (1999). Mycobacterium tuberculosis rrn promoters: differential usage and growth rate-dependent control. J Bacteriol 181, 4326-4333.
    • (1999) J. Bacteriol. , vol.181 , pp. 4326-4333
    • Verma, A.1    Sampla, A.K.2    Tyagi, J.S.3
  • 41
    • 0002445090 scopus 로고
    • Cultivation of Mycobacterium tuberculosis for research purposes
    • Edited by B. Bloom. Washington, DC: American Society for Microbiology
    • Wayne, L. G. (1994). Cultivation of Mycobacterium tuberculosis for research purposes. In Tuberculosis: Pathogenesis, Protection and Control, pp. 73-83. Edited by B. Bloom. Washington, DC: American Society for Microbiology.
    • (1994) Tuberculosis: Pathogenesis, Protection and Control , pp. 73-83
    • Wayne, L.G.1
  • 42
    • 0029976980 scopus 로고    scopus 로고
    • An in vitro model for sequential study of shift down of Mycobacterium tuberculosis through two stages of replicating persistence
    • Wayne, L. G. & Hayes, L. G. (1996). An in vitro model for sequential study of shift down of Mycobacterium tuberculosis through two stages of replicating persistence. Infect Immun 64, 2062-2069.
    • (1996) Infect. Immun. , vol.64 , pp. 2062-2069
    • Wayne, L.G.1    Hayes, L.G.2
  • 43
    • 0000251606 scopus 로고
    • The mycobacteria
    • Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. London: Williams & Wilkins
    • Wayne, L. G. & Kubica, G. P. (1986). The mycobacteria. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1435-1457. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. London: Williams & Wilkins.
    • (1986) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1435-1457
    • Wayne, L.G.1    Kubica, G.P.2
  • 44
    • 0014843566 scopus 로고
    • Effects of nitrogenous components of the medium on the carbohydrate and nucleic acid content of Mycobacterium tuberculosis BCG
    • Winder, F. G. & Rooney, S. A. (1970). Effects of nitrogenous components of the medium on the carbohydrate and nucleic acid content of Mycobacterium tuberculosis BCG. J Gen Microbiol 63, 29-39.
    • (1970) J. Gen. Microbiol. , vol.63 , pp. 29-39
    • Winder, F.G.1    Rooney, S.A.2
  • 45
    • 0023296697 scopus 로고
    • Mycobacteria other than Mycobacterium tuberculosis: Review of microbiologic and clinical aspects
    • Woods, G. L. & Washington, J. A. (1987). Mycobacteria other than Mycobacterium tuberculosis: review of microbiologic and clinical aspects. Rev Infect Dis 9, 275-294.
    • (1987) Rev. Infect. Dis. , vol.9 , pp. 275-294
    • Woods, G.L.1    Washington, J.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.