Evolvability is a selectable trait

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 32, 2004, Pages 11531-11536

  Earl, David J ^a   Deem, Michael W ^a  

^a Rice University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

AMINO ACID SEQUENCE; ARTICLE; BIODIVERSITY; BIOLOGICAL TRAIT; COMPUTER SIMULATION; ENVIRONMENTAL FACTOR; EVOLUTION; MOLECULAR GENETICS; NATURAL SELECTION; PRIORITY JOURNAL; THEORY;

COMPUTER SIMULATION; ENVIRONMENT; EVOLUTION, MOLECULAR; MODELS, GENETIC; MUTATION; PROTEINS; RECOMBINATION, GENETIC; SELECTION (GENETICS); VARIATION (GENETICS);

DARWINIA;

EID: 4143091655     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0404656101     Document Type: Article

References (71)

1. Gould, S. J. (1983) Hen's Teeth and Horse's Toes (Norton, New York).
2. Kirschner, M. & Gerhart, J. (1998) Proc. Natl. Acad. Sci. USA 95, 8420-8427.
3. Dawkins, R. (1989) in Artificial Life, ed. Langton, C. G. (Addison-Wesley, New York), pp. 201-220.
4. Radman, M., Matic, I. & Taddei, F. (1999) Ann. N.Y. Acad. Sci. 870, 146-155.
5. Chicurel, M. (2001) Science 292, 1824-1827.
6. Partridge, L. & Barton, N. H. (2000) Nature 407, 457-458.
7. Kidwell, M. G. (1997) Proc. Natl. Acad. Sci. USA 94, 7704-7711.
8. Shapiro, J. A. (1997) Trends Genet. 13, 98-104.
9. Barton, N. H. & Charlesworth, B. (1998) Science 281, 1986-1990.
10. Fedoroff, N. (2000) Proc. Natl. Acad. Sci. USA 97, 7002-7007.
11. Shapiro, J. A. (2002) J. Biol. Phys. 28, 745-764.
12. Shapiro, J. A. (2002) Ann. N.Y. Acad. Sci. 981, 111-134.
13. Storb, U. (2001) Nat. Immunol. 2, 484-485.
14. Plotkin, J. B. & Dushoff, J. (2003) Proc. Natl. Acad. Sci. USA 100, 7152-7157.
15. Caporale, L. H. (2003) Am. Sci. 91, 234-241.
16. Kepler, T. B. (1997) Mol. Biol. Evol. 14, 637-643.
17. Friedberg, E. C., Feaver, W. F. & Gerlach, V. L. (2000) Proc. Natl. Acad. Sci. USA 97, 5681-5683.
18. Freire, E. (2002) Nat. Biotechnol. 20, 15-16.
19. Kepler, T. B. & Perelson, A. S. (1998) Proc. Natl. Acad. Sci. USA 95, 11514-11519.
20. Rosenberg, S. M. (2001) Nat. Rev. Genet. 2, 504-515.
21. Pepper, J. W. (2003) BioSystems 69, 115-126.
22. Colegrave, N. (2002) Nature 420, 664-666.
23. Frank, S. A. (2002) Immunology and Evolution of Infectious Disease (Princeton Univ. Press, Princeton).
24. Wagner, G. P. & Altenberg, L. (1996) Evolution (Lawrence, Kans.) 50, 967-976.
25. Lenski, R. E., Ofria, C., Pennock, R. T. & Adami, C. (2003) Nature 423, 139-144.
26. Blasio, F. V. D. (1999) Phys. Rev. E 60, 5912-5917.
27. Travis, J. M. J. & Travis, E. R. (2002) Proc. R. Soc. London Ser. B 269, 591-597.
28. Siegal, M. L. & Bergman, A. (2002) Proc. Natl. Acad. Sci. USA 99, 10528-10532.
29. Bergman, A. & Siegal, M. L. (2003) Nature 424, 549-552.
30. Shapiro, J. A. (1992) Genetica 86, 99-111.
31. Lawrence, J. G. (1997) Trends Microbiol. 5, 355-359.
32. Zhang, Y.-X., Perry, K., Vinci, V. A., Powell, K., Stemmer, W. P. C. & del Cardayre, S. B. (2002) Nature 415, 644-646.
33. Pennisi, E. (1998) Science 281, 1131-1134.
34. Gilbert, W. (1978) Nature 271, 501.
35. Gilbert, W., DeSouza, S. J. & Long, M. (1997) Proc. Natl. Acad. Sci. USA 94, 7698-7703.
36. Duret, L., Marais, G. & Biemont, C. (2000) Genetics 156, 1661-1669.
37. Lonnig, W.-E. & Saedler, H. (2002) Annu. Rev. Genet. 36, 389-410.
38. Levin, B. R. & Bergstrom, C. T. (2000) Proc. Natl. Acad. Sci. USA 97, 6981-6985.
39. Doolittle, W. F. (2000) Sci. Am. 282 (2), 90-95.
40. Stemmer, W. P. C. (1994) Nature 370, 389-391.
41. Crameri, A., Raillard, S. A., Bermudez, E. & Stemmer, W. P. C. (1998) Nature 391, 288-291.
42. Zhang, J.-H., Dawes, G. & Stemmer, W. P. C. (1997) Proc. Natl. Acad. Sci. USA 94, 4504-4509.
43. Moore, J. C., Jin, H.-M., Kuchner, O. & Arnold, F. H. (1997) J. Mol. Evol. 272, 336-347.
44. Lutz, S. & Benkovic, S. J. (2000) Curr. Opin. Biotechnol. 11, 319-324.
45. Clarke, B. C. (1979) Proc. R. Soc. London Ser. B 205, 453-474.
46. Dawkins, R. & Krebs, J. R. (1979) Proc. R. Soc. London Ser. B 205, 489-512.
47. Gould, S. J. & Lewontin, R. C. (1979) Proc. R. Soc. London Ser. B 205, 581-598.
48. Gillespie, J. H. (1991) The Causes of Molecular Evolution (Oxford Univ. Press, Oxford).
49. Frank, S. A. & Slatkin, M. (1990) Am. Nat. 136, 244-260.
50. Smith, J. M. (1979) Proc. R. Soc. London Ser. B 205, 475-488.
51. Smith, J. M. (1982) Evolution and the Theory of Games (Cambridge Univ. Press, Cambridge, U.K.).
52. Sasaki, A. & Ellner, S. (1995) Evolution (Lawrence, Kans.) 49, 337-350.
53. Sato, K., Ito, Y., Yomo, T. & Kaneko, K. (2003) Proc. Natl. Acad. Sci. USA 100, 14086-14090.
54. Bogarad, L. D. & Deem, M. W. (1999) Proc. Natl. Acad. Sci. USA 96, 2591-2595.
55. Kauffman, S. & Levin, S. (1987) J. Theor. Biol. 128, 11-45.
56. Kauffman, S. A. (1993) The Origins of Order (Oxford Univ. Press, New York).
57. Kauffman, S. A. & MacReady, W. G. (1995) J. Theor. Biol. 173, 427-440.
58. Perelson, A. S. & Macken, C. A. (1995) Proc. Natl. Acad. Sci. USA 92, 9657-9661.
59. Deem, M. W. & Lee, H. Y. (2003) Phys. Rev. Lett. 91, 068101.
60. Michod, R. E. & Levin, B. R., eds. (1988) The Evolution of Sex (Sinauer, Sunderland, MA).
61. Chandrasekhar, S. (1943) Rev. Mod. Phys. 15, 1-89.
62. Aguilar, A., Roemer, G., Debenham, S., Binns, M., Garcelon, D. & Wayne, R. K. (2004) Proc. Natl. Acad. Sci. USA 101, 3490-3494.
63. Zhu, T. F., Korber, B. T., Nahmias, A. J., Hooper, E., Sharp, P. M. & Ho, D. D. (1998) Nature 391, 594-597.
64. Gao, F., Bailes, E., Robertson, D. L., Chen, Y. L., Rodenburg, C. M., Michael, S. F., Cummins, L. B., Arthur, L. O., Peeters, M., Shaw, G. M., et al. (1999) Nature 397, 436-441.
65. Lederberg, J., Shope, R. E. & S. C. Oaks, J., eds. (1992) Emerging Infections: Microbial Threats to Health in the United States (Natl. Acad. Press, Washington, DC).
66. Levy, D. N., Aldrovandi, G. M., Kutsch, O. & Shaw, G. M. (2004) Proc. Natl. Acad. Sci. USA 101, 4204-4209.
67. Tan, T., Bogarad, L. D. & Deem, M. W. (2004) J. Mol. Evol., in press.
68. Elena, S. F. & Lenski, R. E. (2003) Nat. Rev. Genet. 4, 457-469.
69. Reboud, X. & Bell, G. (1997) Heredity 78, 507-514.
70. Bennett, A. F. & Lenski, R. E. (1993) Evolution (Lawrence, Kans.) 47, 1-12.
71. Leroi, A. M., Lenski, R. E. & Bennett, A. F. (1994) Evolution (Lawrence, Kans.) 48, 1222-1229.