The bioenergetic costs of a gene

Proceedings of the National Academy of Sciences of the United States of America

Volumn 112, Issue 51, 2015, Pages 15690-15695

  Lynch, Michael ^a   Marinov, Georgi K ^a  

^a INDIANA UNIVERSITY   (United States)

Author keywords

Cellular bioenergetics; Evolutionary genomics; Gene cost; Transcription; Translation

Indexed keywords

ADENOSINE TRIPHOSPHATE; AMINO ACID; DNA; MESSENGER RNA; POLYADENYLIC ACID; PROTEIN; RNA; RNA POLYMERASE;

ARABIDOPSIS THALIANA; ARTICLE; BIOENERGY; CELL ENERGY; CELL VOLUME; CHROMOSOME; ESCHERICHIA COLI; EUKARYOTE; EUKARYOTIC CELL; GENE; GENETIC DRIFT; GENETIC TRANSCRIPTION; GENOME SIZE; GENOMICS; MITOCHONDRION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SPECIES; STRUCTURAL GENE; ENERGY METABOLISM; GENETIC SELECTION; MOLECULAR EVOLUTION;

ENERGY METABOLISM; EVOLUTION, MOLECULAR; GENETIC DRIFT; SELECTION, GENETIC;

EID: 84952705872     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1514974112     Document Type: Article

References (21)

1. Lynch M (2007a) The frailty of adaptive hypotheses for the origins of organismal complexity. Proc Natl Acad Sci USA 104(Suppl 1):8597-8604.
2. Lynch M (2007b) The Origins of Genome Architecture (Sinauer, Sunderland, MA).
3. Lukeš J, Archibald JM, Keeling PJ, Doolittle WF, Gray MW (2011) How a neutral evolutionary ratchet can build cellular complexity. IUBMB Life 63(7):528-537.
4. Booth A, Doolittle WF (2015) Eukaryogenesis, how special really? Proc Natl Acad Sci USA 112(33):10278-10285.
5. Lane N, Martin W (2010) The energetics of genome complexity. Nature 467(7318):929-934.
6. Akashi H, Gojobori T (2002) Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis. Proc Natl Acad Sci USA 99(6):3695-3700.
7. Wagner A (2005) Energy constraints on the evolution of gene expression. Mol Biol Evol 22(6):1365-1374.
8. Kimura M (1983) The Neutral Theory of Molecular Evolution (Cambridge Univ Press, Cambridge, UK).
9. Bauchop T, Elsden SR (1960) The growth of micro-organisms in relation to their energy supply. J Gen Microbiol 23:457-469.
10. Pirt SJ (1982) Maintenance energy: A general model for energy-limited and energysufficient growth. Arch Microbiol 133(4):300-302.
11. Tempest DW, Neijssel OM (1984) The status of YATP and maintenance energy as biologically interpretable phenomena. Annu Rev Microbiol 38:459-486.
12. Russell JB, Cook GM (1995) Energetics of bacterial growth: Balance of anabolic and catabolic reactions. Microbiol Rev 59(1):48-62.
13. Glazier DS (2015) Body-mass scaling of metabolic rate: What are the relative roles of cellular versus systemic effects? Biology (Basel) 4(1):187-199.
14. Dillon SC, Dorman CJ (2010) Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat Rev Microbiol 8(3):185-195.
15. Lynch M (2006) Streamlining and simplification of microbial genome architecture. Annu Rev Microbiol 60:327-349.
16. Lynch M, Bobay LM, Catania F, Gout JF, Rho M (2011) The repatterning of eukaryotic genomes by random genetic drift. Annu Rev Genomics Hum Genet 12:347-366.
17. Wang M, Kurland CG, Caetano-Anollés G (2011) Reductive evolution of proteomes and protein structures. Proc Natl Acad Sci USA 108(29):11954-11958.
18. Doolittle WF (2013) Is junk DNA bunk? A critique of ENCODE. Proc Natl Acad Sci USA 110(14):5294-5300.
19. Graur D, et al. (2013) On the immortality of television sets: "Function" in the human genome according to the evolution-free gospel of ENCODE. Genome Biol Evol 5(3):578-590.
20. Kellis M, et al. (2014) Defining functional DNA elements in the human genome. Proc Natl Acad Sci USA 111(17):6131-6138.
21. Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290(5494):1151-1155.