메뉴 건너뛰기




Volumn 10, Issue 85, 2013, Pages

Genomic mutation rates that neutralize adaptive evolution and natural selection

Author keywords

Beneficial mutations; Error threshold; Fisher's fundamental theorem; Mutagenesis; Population genetics

Indexed keywords

BIOPHYSICS; BIOTECHNOLOGY; MUTAGENESIS;

EID: 84891432474     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2013.0329     Document Type: Article
Times cited : (24)

References (86)
  • 1
    • 36348963100 scopus 로고    scopus 로고
    • Distribution of fitness and virulence effects caused by single-nucleotide substitutions in tobacco etch virus
    • doi:10.1128/JVI.00524-07
    • Carrasco P, de la Iglesia F, Elena SF. 2007 Distribution of fitness and virulence effects caused by single-nucleotide substitutions in tobacco etch virus. J. Virol. 81, 12 979-12 984. (doi:10.1128/JVI.00524-07)
    • (2007) J. Virol. , vol.81 , pp. 12979-12984
    • Carrasco, P.1    De La Iglesia, F.2    Elena, S.F.3
  • 2
    • 77954324311 scopus 로고    scopus 로고
    • Mutational fitness effects in RNA and single-stranded DNA viruses: Common patterns revealed by site-directed mutagenesis studies
    • doi:10.1098/rstb.2010.0063
    • Sanjuán R. 2010 Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies. Phil. Trans. R. Soc. B 365, 1975-1982. (doi:10.1098/rstb. 2010.0063)
    • (2010) Phil. Trans. R. Soc. B , vol.365 , pp. 1975-1982
    • Sanjuán, R.1
  • 3
    • 2942565781 scopus 로고    scopus 로고
    • The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
    • doi:10.1073/pnas.0400146101
    • Sanjuán R, Moya A, Elena SF. 2004 The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc. Natl Acad. Sci. USA 101, 8396-8401. (doi:10.1073/pnas.0400146101)
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 8396-8401
    • Sanjuán, R.1    Moya, A.2    Elena, S.F.3
  • 4
    • 0001224667 scopus 로고
    • Some genetic aspects of sex
    • doi:10.1086/280418
    • Muller H. 1932 Some genetic aspects of sex. Am. Nat. 66, 118-138. (doi:10.1086/280418)
    • (1932) Am. Nat. , vol.66 , pp. 118-138
    • Muller, H.1
  • 5
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • Felsenstein J. 1974 The evolutionary advantage of recombination. Genetics 78, 737-756.
    • (1974) Genetics , vol.78 , pp. 737-756
    • Felsenstein, J.1
  • 6
    • 0018029597 scopus 로고
    • The accumulation of deleterious genes in a population: Muller's ratchet
    • doi:10.1016/0040-5809(78)90027-8
    • Haigh J. 1978 The accumulation of deleterious genes in a population: Muller's ratchet. Theor. Popul. Biol. 14, 251-267. (doi:10.1016/0040-5809(78) 90027-8)
    • (1978) Theor. Popul. Biol. , vol.14 , pp. 251-267
    • Haigh, J.1
  • 7
    • 0030032923 scopus 로고    scopus 로고
    • Muller's ratchet decreases fitness of a DNA-based microbe
    • doi:10.1073/pnas.93.2.906
    • Andersson D, Hughes D. 1996 Muller's ratchet decreases fitness of a DNA-based microbe. Proc. Natl Acad. Sci. USA 93, 906-907. (doi:10.1073/pnas.93. 2.906)
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 906-907
    • Andersson, D.1    Hughes, D.2
  • 8
    • 0001359025 scopus 로고
    • Muller's ratchet and the advantage of sex in the RNA virus 6
    • doi:10.2307/2409851
    • Chao L, Tran T, Matthews C. 1992 Muller's ratchet and the advantage of sex in the RNA virus 6. Evolution 46, 289-299. (doi:10.2307/2409851)
    • (1992) Evolution , vol.46 , pp. 289-299
    • Chao, L.1    Tran, T.2    Matthews, C.3
  • 9
    • 0345790136 scopus 로고    scopus 로고
    • Mutation accumulation in growing asexual lineages
    • doi:10.1103/PhysRevLett.91.218101
    • Fontanari JF, Colato A, Howard RS. 2003 Mutation accumulation in growing asexual lineages. Phys. Rev. Lett. 91, 218101. (doi:10.1103/PhysRevLett.91. 218101)
    • (2003) Phys. Rev. Lett. , vol.91 , pp. 218101
    • Fontanari, J.F.1    Colato, A.2    Howard, R.S.3
  • 10
    • 0034533786 scopus 로고    scopus 로고
    • On the speed of Muller's ratchet
    • Gordo I, Charlesworth B. 2000 On the speed of Muller's ratchet. Genetics 156, 2137-2140. (Pubitemid 32001270)
    • (2000) Genetics , vol.156 , Issue.4 , pp. 2137-2140
    • Gordo, I.1    Charlesworth, B.2
  • 11
    • 0025636102 scopus 로고
    • Muller's Ratchet and the evolution of supernumerary chromosomes
    • doi:10.1139/g90-123
    • Green DM. 1990 Muller's Ratchet and the evolution of supernumerary chromosomes. Genome 33, 818-824. (doi:10.1139/g90-123)
    • (1990) Genome , vol.33 , pp. 818-824
    • Green, D.M.1
  • 12
    • 0018249035 scopus 로고    scopus 로고
    • Does Muller's ratchet work with selfing?
    • doi:10.1017/S0016672300018784
    • Heller R, Smith JM. 2009 Does Muller's ratchet work with selfing? Genet. Res. 32, 289-293. (doi:10.1017/S0016672300018784)
    • (2009) Genet. Res. , vol.32 , pp. 289-293
    • Heller, R.1    Smith, J.M.2
  • 13
    • 0021733694 scopus 로고
    • Deleterious mutations as an evolutionary factor: 1. The advantage of recombination
    • doi:10.1017/S0016672300026392
    • Kondrashov AS. 1984 Deleterious mutations as an evolutionary factor: 1. The advantage of recombination. Genet. Res. 44, 199-217. (doi:10.1017/ S0016672300026392)
    • (1984) Genet. Res. , vol.44 , pp. 199-217
    • Kondrashov, A.S.1
  • 14
    • 42049110420 scopus 로고    scopus 로고
    • Quantifying the threat of extinction from Muller's ratchet in the diploid Amazon molly (Poecilia formosa)
    • doi:10.1186/1471-2148-8-88
    • Loewe L, Lamatsch DK. 2008 Quantifying the threat of extinction from Muller's ratchet in the diploid Amazon molly (Poecilia formosa). BMC Evol. Biol. 8, 88. (doi:10.1186/1471-2148-8-88)
    • (2008) BMC Evol. Biol. , vol.8 , pp. 88
    • Loewe, L.1    Lamatsch, D.K.2
  • 15
    • 0345471842 scopus 로고    scopus 로고
    • Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events
    • Yuste E, Sanchez-Palomino S, Casado C, Domingo E, López- Galíndez C. 1999 Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events. J. Virol. 73, 2745-2751. (Pubitemid 29135660)
    • (1999) Journal of Virology , vol.73 , Issue.4 , pp. 2745-2751
    • Yuste, E.1    Sanchez-Palomino, S.2    Casado, C.3    Domingo, E.4    Lopez-Galindez, C.5
  • 16
    • 0015133749 scopus 로고
    • Self organization of matter and the evolution of biological macro-molecules
    • doi:10.1007/BF00623322
    • Eigen M. 1971 Self organization of matter and the evolution of biological macro-molecules. Die Naturwissenschaften 58, 465-523. (doi:10.1007/BF00623322)
    • (1971) Die Naturwissenschaften , vol.58 , pp. 465-523
    • Eigen, M.1
  • 17
    • 0037108885 scopus 로고    scopus 로고
    • Error catastrophe and antiviral strategy
    • doi:10.1073/pnas.212514799
    • Eigen M. 2002 Error catastrophe and antiviral strategy. Proc. Natl Acad. Sci. USA 99, 13 374-13 376. (doi:10.1073/pnas.212514799)
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 13374-13376
    • Eigen, M.1
  • 18
    • 11844274684 scopus 로고    scopus 로고
    • The error threshold
    • doi:10.1016/j.virusres.2004.11.002
    • Biebricher CK, Eigen M. 2005 The error threshold. Virus Res. 107, 117-127. (doi:10.1016/j.virusres.2004.11.002)
    • (2005) Virus Res. , vol.107 , pp. 117-127
    • Biebricher, C.K.1    Eigen, M.2
  • 20
    • 0033944978 scopus 로고    scopus 로고
    • Natural selection: A phase transition?
    • doi:10.1016/S0301-4622(00)00122-8
    • Eigen M. 2000 Natural selection: a phase transition? Biophys. Chem. 85, 101-123. (doi:10.1016/S0301-4622(00)00122-8)
    • (2000) Biophys. Chem. , vol.85 , pp. 101-123
    • Eigen, M.1
  • 21
    • 67649969564 scopus 로고    scopus 로고
    • Robustness and epistasis in mutation-selection models
    • doi:10.1088/1478-3975/6/3/036007
    • Wolff A, Krug J. 2009 Robustness and epistasis in mutation-selection models. Phys. Biol. 6, 036007. (doi:10.1088/1478-3975/6/3/036007)
    • (2009) Phys. Biol. , vol.6 , pp. 036007
    • Wolff, A.1    Krug, J.2
  • 22
    • 0036691639 scopus 로고    scopus 로고
    • Mutation-selection balance: Ancestry, load, and maximum principle
    • doi:10.1006/tpbi.2002.1582
    • Hermisson J, Redner O, Wagner H, Baake E. 2002 Mutation-selection balance: ancestry, load, and maximum principle. Theor. Popul. Biol. 62, 9-46. (doi:10.1006/tpbi.2002.1582)
    • (2002) Theor. Popul. Biol. , vol.62 , pp. 9-46
    • Hermisson, J.1    Redner, O.2    Wagner, H.3    Baake, E.4
  • 23
    • 0000829918 scopus 로고
    • Error thresholds for molecular quasispecies as phase transitions: From simple landscapes to spin-glass models
    • doi:10.1103/PhysRevA.45.6038
    • Tarazona P. 1992 Error thresholds for molecular quasispecies as phase transitions: from simple landscapes to spin-glass models. Phys. Rev. A 45, 6038-6050. (doi:10.1103/PhysRevA.45.6038)
    • (1992) Phys. Rev. A , vol.45 , pp. 6038-6050
    • Tarazona, P.1
  • 24
    • 33645978710 scopus 로고    scopus 로고
    • Examining the theory of error catastrophe
    • doi:10.1128/JVI.80.1.20-26.2006
    • Summers J, Litwin S. 2006 Examining the theory of error catastrophe. J. Virol. 80, 20-26. (doi:10.1128/JVI.80.1.20-26.2006)
    • (2006) J. Virol. , vol.80 , pp. 20-26
    • Summers, J.1    Litwin, S.2
  • 25
    • 0029838288 scopus 로고    scopus 로고
    • Viral quasi-species and recombination
    • doi:10.1098/rspb.1996.0231
    • Boerlijst MC, Bonhoeffer S, Nowak MA. 1996 Viral quasi-species and recombination. Proc. R. Soc. Biol. Sci. 263, 1577-1584. (doi:10.1098/rspb.1996. 0231)
    • (1996) Proc. R. Soc. Biol. Sci. , vol.263 , pp. 1577-1584
    • Boerlijst, M.C.1    Bonhoeffer, S.2    Nowak, M.A.3
  • 26
    • 0034598259 scopus 로고    scopus 로고
    • Error thresholds for quasispecies on dynamic fitness landscapes
    • doi:10.1103/PhysRevLett.84.191
    • Nilsson M, Snoad N. 2000 Error thresholds for quasispecies on dynamic fitness landscapes. Phys. Rev. Lett. 84, 191-194. (doi:10.1103/PhysRevLett.84. 191)
    • (2000) Phys. Rev. Lett. , vol.84 , pp. 191-194
    • Nilsson, M.1    Snoad, N.2
  • 27
    • 0013126501 scopus 로고    scopus 로고
    • Recombination and error thresholds in finite populations
    • (eds W Banzhaf, C Reeves), San Francisco, CA: Morgan Kaufmann Publishers, Inc.
    • Ochoa G, Harvey I. 1999 Recombination and error thresholds in finite populations. In Foundations of genetic algorithms 5 (eds W Banzhaf, C Reeves), pp. 245-264. San Francisco, CA: Morgan Kaufmann Publishers, Inc.
    • (1999) Foundations of Genetic Algorithms 5 , pp. 245-264
    • Ochoa, G.1    Harvey, I.2
  • 28
    • 77954623766 scopus 로고    scopus 로고
    • Error threshold in RNA quasispecies models with complementation
    • doi:10.1016/j.jtbi.2010.05.018
    • Sardanyés J, Elena SF. 2010 Error threshold in RNA quasispecies models with complementation. J. Theor. Biol. 265, 278-286. (doi:10.1016/j.jtbi. 2010.05.018)
    • (2010) J. Theor. Biol. , vol.265 , pp. 278-286
    • Sardanyés, J.1    Elena, S.F.2
  • 29
    • 84924919448 scopus 로고    scopus 로고
    • Simple genomes, complex interactions: Epistasis in RNA virus
    • doi:10.1063/1.3449300
    • Elena SF, Solé RV, Sardanyés J. 2010 Simple genomes, complex interactions: epistasis in RNA virus. Chaos 20, 026106. (doi:10.1063/1.3449300)
    • (2010) Chaos , vol.20 , pp. 026106
    • Elena, S.F.1    Solé, R.V.2    Sardanyés, J.3
  • 30
    • 80052886584 scopus 로고    scopus 로고
    • Quasispecies spatial models for RNA viruses with different replication modes and infection strategies
    • doi:10.1371/journal.pone.0024884
    • Sardanyés J, Elena SF. 2011 Quasispecies spatial models for RNA viruses with different replication modes and infection strategies. PLoS ONE 6, e24884. (doi:10.1371/journal.pone.0024884)
    • (2011) PLoS ONE , vol.6
    • Sardanyés, J.1    Elena, S.F.2
  • 31
    • 84859388856 scopus 로고    scopus 로고
    • Dynamics of alternative modes of RNA replication for positive-sense RNA viruses
    • doi:10.1098/rsif.2011.0471
    • Sardanyés J, Martínez F, Daròs J-A, Elena SF. 2012 Dynamics of alternative modes of RNA replication for positive-sense RNA viruses. J. R. Soc. Interface 9, 768-776. (doi:10.1098/rsif.2011.0471)
    • (2012) J. R. Soc. Interface , vol.9 , pp. 768-776
    • Sardanyés, J.1    Martínez, F.2    Daròs, J.-A.3    Elena, S.F.4
  • 32
    • 33750708202 scopus 로고    scopus 로고
    • Bifurcations and phase transitions in spatially extended two-member hypercycles
    • doi:10.1016/j.jtbi.2006.07.014
    • Sardanyés J, Solé RV. 2006 Bifurcations and phase transitions in spatially extended two-member hypercycles. J. Theor. Biol. 243, 468-482. (doi:10.1016/j.jtbi.2006.07.014)
    • (2006) J. Theor. Biol. , vol.243 , pp. 468-482
    • Sardanyés, J.1    Solé, R.V.2
  • 33
    • 70450172874 scopus 로고    scopus 로고
    • Replication mode and landscape topology differentially affect RNA virus mutational load and robustness
    • doi:10.1128/JVI.00767-09
    • Sardanyes J, Sole RV, Elena SF. 2009 Replication mode and landscape topology differentially affect RNA virus mutational load and robustness. J. Virol. 83, 12 579-12 589. (doi:10.1128/JVI.00767-09)
    • (2009) J. Virol. , vol.83 , pp. 12579-12589
    • Sardanyes, J.1    Sole, R.V.2    Elena, S.F.3
  • 34
    • 33646248893 scopus 로고    scopus 로고
    • Information catastrophe in RNA viruses through replication thresholds
    • doi:10.1016/j.jtbi.2005.09.024
    • Solé R, Sardanyes J, Diez J, Mas A. 2006 Information catastrophe in RNA viruses through replication thresholds. J. Theor. Biol. 240, 353-359. (doi:10.1016/j.jtbi.2005.09.024)
    • (2006) J. Theor. Biol. , vol.240 , pp. 353-359
    • Solé, R.1    Sardanyes, J.2    Diez, J.3    Mas, A.4
  • 35
    • 0027329523 scopus 로고
    • Error thresholds on correlated fitness landscapes
    • doi:10.1006/jtbi.1993.1160
    • Bonhoeffer S, Stadler P. 1993 Error thresholds on correlated fitness landscapes. J. Theor. Biol. 164, 359-372. (doi:10.1006/jtbi.1993.1160)
    • (1993) J. Theor. Biol. , vol.164 , pp. 359-372
    • Bonhoeffer, S.1    Stadler, P.2
  • 36
    • 70450174911 scopus 로고    scopus 로고
    • Some observations about the nearest-neighbor model of the error threshold
    • doi:10.1063/1.3241401
    • Gerrish PJ. 2009 Some observations about the nearest-neighbor model of the error threshold. AIP Conf. Proc. 1168, 1564-1568. (doi:10.1063/1.3241401)
    • (2009) AIP Conf. Proc. , vol.1168 , pp. 1564-1568
    • Gerrish, P.J.1
  • 37
    • 33847251630 scopus 로고    scopus 로고
    • Error-threshold exists in fitness landscapes with lethal mutants
    • doi:10.1186/1471-2148-7-15
    • Takeuchi N, Hogeweg P. 2007 Error-threshold exists in fitness landscapes with lethal mutants. BMC Evol. Biol. 7, 15. (doi:10.1186/1471-2148-7-15)
    • (2007) BMC Evol. Biol. , vol.7 , pp. 15
    • Takeuchi, N.1    Hogeweg, P.2
  • 38
    • 15244359731 scopus 로고    scopus 로고
    • Phenotypic error threshold; additivity and epistasis in RNA evolution
    • doi:10.1186/1471-2148-5-9
    • Takeuchi N, Poorthuis PH, Hogeweg P. 2005 Phenotypic error threshold; additivity and epistasis in RNA evolution. BMC Evol. Biol. 5, 9. (doi:10.1186/1471-2148-5-9)
    • (2005) BMC Evol. Biol. , vol.5 , pp. 9
    • Takeuchi, N.1    Poorthuis, P.H.2    Hogeweg, P.3
  • 39
    • 77649341255 scopus 로고    scopus 로고
    • Effect of lethality on the extinction and on the error threshold of quasispecies
    • doi:10.1016/j.jtbi.2009.10.011
    • Tejero H, Marín A, Montero F. 2010 Effect of lethality on the extinction and on the error threshold of quasispecies. J. Theor. Biol. 262, 733-741. (doi:10.1016/j.jtbi.2009.10.011)
    • (2010) J. Theor. Biol. , vol.262 , pp. 733-741
    • Tejero, H.1    Marín, A.2    Montero, F.3
  • 40
    • 0035430003 scopus 로고    scopus 로고
    • Dynamic fitness landscapes in molecular evolution
    • doi:10.1016/S0370-1573(00)00118-6
    • Wilke CO, Ronnewinkel C, Martinetz T. 2001 Dynamic fitness landscapes in molecular evolution. Phys. Rep. 349, 395-446. (doi:10.1016/S0370-1573(00)00118- 6)
    • (2001) Phys. Rep. , vol.349 , pp. 395-446
    • Wilke, C.O.1    Ronnewinkel, C.2    Martinetz, T.3
  • 41
    • 0030789022 scopus 로고    scopus 로고
    • Model dependency of error thresholds: The role of fitness functions and contrasts between the finite and infinite sites models
    • doi:10.1017/S0016672397002619
    • Wiehe T. 1997 Model dependency of error thresholds: the role of fitness functions and contrasts between the finite and infinite sites models. Genet. Res. 69, 127-136. (doi:10.1017/S0016672397002619)
    • (1997) Genet. Res. , vol.69 , pp. 127-136
    • Wiehe, T.1
  • 42
    • 0027134973 scopus 로고
    • Muller's ratchet and mutational melt-downs
    • doi:10.2307/2410218
    • Gabriel W, Lynch M, Burger R. 1993 Muller's ratchet and mutational melt-downs. Evolution 47, 1744-1757. (doi:10.2307/2410218)
    • (1993) Evolution , vol.47 , pp. 1744-1757
    • Gabriel, W.1    Lynch, M.2    Burger, R.3
  • 44
    • 0034972360 scopus 로고    scopus 로고
    • Mutational meltdown in laboratory yeast populations
    • doi:10.1554/0014-3820(2001)055 [0909:MMILYP]2.0.CO;2
    • Zeyl C, Mizesko M, de Visser JA. 2001 Mutational meltdown in laboratory yeast populations. Evolution 55, 909-917. (doi:10.1554/0014-3820(2001)055 [0909:MMILYP]2.0.CO;2)
    • (2001) Evolution , vol.55 , pp. 909-917
    • Zeyl, C.1    Mizesko, M.2    De Visser, J.A.3
  • 45
    • 0032271381 scopus 로고    scopus 로고
    • Eigen's error threshold and mutational meltdown in a quasispecies model
    • doi:10.1142/S0129183198000935
    • Bagnoli F, Bezzi M. 1998 Eigen's error threshold and mutational meltdown in a quasispecies model. Int. J. Mod. Phys. 9, 999-1005. (doi:10.1142/ S0129183198000935)
    • (1998) Int. J. Mod. Phys. , vol.9 , pp. 999-1005
    • Bagnoli, F.1    Bezzi, M.2
  • 46
    • 0032363405 scopus 로고    scopus 로고
    • Dynamics in Eigen quasispecies model
    • doi:10.1142/S0129183198000376
    • Malarz K, Tiggemann D. 1998 Dynamics in Eigen quasispecies model. Int. J. Mod. Phys. C 9, 481-490. (doi:10.1142/S0129183198000376)
    • (1998) Int. J. Mod. Phys. C , vol.9 , pp. 481-490
    • Malarz, K.1    Tiggemann, D.2
  • 47
    • 3543125439 scopus 로고    scopus 로고
    • Adaptive evolution of asexual populations under Muller's ratchet
    • doi:10.1554/03-595
    • Bachtrog D, Gordo I. 2004 Adaptive evolution of asexual populations under Muller's ratchet. Evolution 58, 1403-1413. (doi:10.1554/03-595)
    • (2004) Evolution , vol.58 , pp. 1403-1413
    • Bachtrog, D.1    Gordo, I.2
  • 49
    • 84865074474 scopus 로고    scopus 로고
    • Dynamic mutation-selection balance as an evolutionary attractor
    • doi:10.1534/genetics.112.141291
    • Goyal S, Balick DJ, Jerison ER, Neher RA, Shraiman BI, Desai MM. 2012 Dynamic mutation-selection balance as an evolutionary attractor. Genetics 191, 1309-1319. (doi:10.1534/genetics.112.141291)
    • (2012) Genetics , vol.191 , pp. 1309-1319
    • Goyal, S.1    Balick, D.J.2    Jerison, E.R.3    Neher, R.A.4    Shraiman, B.I.5    Desai, M.M.6
  • 50
    • 84955349191 scopus 로고
    • The mathematical theory of natural and artificial selection
    • doi:10.1017/S0305004100015644
    • Haldane JBS. 1927 The mathematical theory of natural and artificial selection. Proc. Camb. Phil. Soc. 23, 838-844. (doi:10.1017/S0305004100015644)
    • (1927) Proc. Camb. Phil. Soc. , vol.23 , pp. 838-844
    • Haldane, J.B.S.1
  • 51
    • 0013979181 scopus 로고
    • The effect of linkage on limits to artificial selection
    • doi:10.1017/S0016672300010156
    • Hill WG, Robertson A. 1966 The effect of linkage on limits to artificial selection. Genet. Res. 8, 269-294. (doi:10.1017/S0016672300010156)
    • (1966) Genet. Res. , vol.8 , pp. 269-294
    • Hill, W.G.1    Robertson, A.2
  • 52
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • doi:10.1023/A:1017067816551
    • Gerrish PJ, Lenski RE. 1998 The fate of competing beneficial mutations in an asexual population. Genetica 102-103, 127-144. (doi:10.1023/A:1017067816551)
    • (1998) Genetica , vol.102-103 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 53
    • 9244238208 scopus 로고    scopus 로고
    • Viral error catastrophe by mutagenic nucleosides
    • doi:10.1146/annurev.micro.58.030603.123649
    • Anderson JP, Daifuku R, Loeb LA. 2004 Viral error catastrophe by mutagenic nucleosides. Annu. Rev. Microbiol. 58, 183-205. (doi:10.1146/annurev. micro.58.030603.123649)
    • (2004) Annu. Rev. Microbiol. , vol.58 , pp. 183-205
    • Anderson, J.P.1    Daifuku, R.2    Loeb, L.A.3
  • 54
    • 85088712648 scopus 로고    scopus 로고
    • Lethal mutagenesis and evolutionary epidemiology
    • doi:10.1023/A:1017043111100
    • Bürger R. 1998 Lethal mutagenesis and evolutionary epidemiology. Genetica 102-103, 279-298. (doi:10.1023/A:1017043111100)
    • (1998) Genetica , vol.102-103 , pp. 279-298
    • Bürger, R.1
  • 55
    • 10644225293 scopus 로고    scopus 로고
    • Drug resistance, virus fitness and HIV-1 mutagenesis
    • doi:10.2174/1381612043382404
    • Chen R, Quinones-Mateu ME, Mansky LM. 2004 Drug resistance, virus fitness and HIV-1 mutagenesis. Curr. Pharm. Des. 10, 4065-4070. (doi:10.2174/ 1381612043382404)
    • (2004) Curr. Pharm. Des. , vol.10 , pp. 4065-4070
    • Chen, R.1    Quinones-Mateu, M.E.2    Mansky, L.M.3
  • 56
    • 24644460976 scopus 로고    scopus 로고
    • Human immunodeficiency virus mutagenesis during antiviral therapy: Impact of drug-resistant reverse transcriptase and nucleoside and nonnucleoside reverse transcriptase inhibitors on human immunodeficiency virus type 1 mutation frequencies
    • doi:10.1128/JVI.79.18.12045-12057.2005
    • Chen R, Yokoyama M, Sato H, Reilly C, Mansky LM. 2005 Human immunodeficiency virus mutagenesis during antiviral therapy: impact of drug-resistant reverse transcriptase and nucleoside and nonnucleoside reverse transcriptase inhibitors on human immunodeficiency virus type 1 mutation frequencies. J. Virol. 79, 12 045-12 057. (doi:10.1128/JVI.79.18.12045-12057. 2005)
    • (2005) J. Virol. , vol.79 , pp. 12045-12057
    • Chen, R.1    Yokoyama, M.2    Sato, H.3    Reilly, C.4    Mansky, L.M.5
  • 58
    • 0024748186 scopus 로고
    • An interpretation and proof of the fundamental theorem of natural selection
    • doi:10.1016/0040-5809(89)90028-2
    • Ewens W. 1989 An interpretation and proof of the fundamental theorem of natural selection. Theor. Popul. Biol. 36, 167-180. (doi:10.1016/0040-5809(89) 90028-2)
    • (1989) Theor. Popul. Biol. , vol.36 , pp. 167-180
    • Ewens, W.1
  • 59
    • 0026592932 scopus 로고
    • Fisher's fundamental theorem of natural selection
    • doi:10.1016/0169-5347(92)90248-A
    • Frank S, Slatkin M. 1992 Fisher's fundamental theorem of natural selection. Trends Ecol. Evol. 7, 92-95. (doi:10.1016/0169-5347(92)90248-A)
    • (1992) Trends Ecol. Evol. , vol.7 , pp. 92-95
    • Frank, S.1    Slatkin, M.2
  • 60
    • 20344377686 scopus 로고    scopus 로고
    • Fisher the evolutionary biologist
    • doi:10.1111/1467-9884.00362
    • Grafen A. 2003 Fisher the evolutionary biologist. J. R. Stat. Soc. D 52, 319-329. (doi:10.1111/1467-9884.00362)
    • (2003) J. R. Stat. Soc. D , vol.52 , pp. 319-329
    • Grafen, A.1
  • 61
    • 0029023813 scopus 로고
    • George Price's contributions to evolutionary genetics
    • doi:10.1006/jtbi.1995.0148
    • Frank SA. 1995 George Price's contributions to evolutionary genetics. J. Theor. Biol. 175, 373-388. (doi:10.1006/jtbi.1995.0148)
    • (1995) J. Theor. Biol. , vol.175 , pp. 373-388
    • Frank, S.A.1
  • 62
    • 40149087332 scopus 로고    scopus 로고
    • The Price equation
    • doi:10.1016/j.cub.2008.01.005
    • Gardner A. 2008 The Price equation. Curr. Biol. 18, R198-R202. (doi:10.1016/j.cub.2008.01.005)
    • (2008) Curr. Biol. , vol.18
    • Gardner, A.1
  • 63
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation selection balance and the effect of linkage on positive selection
    • doi:10.1534/genetics.106.067678
    • Desai MM, Fisher DS. 2007 Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics 176, 1759-1798. (doi:10.1534/genetics.106.067678)
    • (2007) Genetics , vol.176 , pp. 1759-1798
    • Desai, M.M.1    Fisher, D.S.2
  • 64
    • 11244275516 scopus 로고    scopus 로고
    • Spontaneous mutations in diploid Saccharomyces cerevisiae: More beneficial than expected
    • doi:10.1534/genetics.104.033761
    • Joseph S, Hall D. 2004 Spontaneous mutations in diploid Saccharomyces cerevisiae: more beneficial than expected. Genetics 168, 1817-1825. (doi:10.1534/genetics.104.033761)
    • (2004) Genetics , vol.168 , pp. 1817-1825
    • Joseph, S.1    Hall, D.2
  • 65
    • 34547924819 scopus 로고    scopus 로고
    • Adaptive mutations in bacteria: High rate and small effects
    • doi:10.1126/science.1142284
    • Perfeito L, Fernandes L, Mota C, Gordo I. 2007 Adaptive mutations in bacteria: high rate and small effects. Science 317, 813-815. (doi:10.1126/science.1142284)
    • (2007) Science , vol.317 , pp. 813-815
    • Perfeito, L.1    Fernandes, L.2    Mota, C.3    Gordo, I.4
  • 66
    • 34247349509 scopus 로고    scopus 로고
    • Understanding the evolutionary fate of finite populations: The dynamics of mutational effects
    • doi:10.1371/journal.pbio.0050094
    • Silander OK, Tenaillon O, Chao L. 2007 Understanding the evolutionary fate of finite populations: the dynamics of mutational effects. PLoS Biol. 5, e94. (doi:10.1371/journal.pbio.0050094)
    • (2007) PLoS Biol. , vol.5
    • Silander, O.K.1    Tenaillon, O.2    Chao, L.3
  • 67
    • 77951593683 scopus 로고    scopus 로고
    • Beneficial mutations and the dynamics of adaptation in asexual populations
    • doi:10.1098/rstb.2009.0290
    • Sniegowski PD, Gerrish PJ. 2010 Beneficial mutations and the dynamics of adaptation in asexual populations. Phil. Trans. R. Soc. B 365, 1255-1263. (doi:10.1098/rstb.2009.0290)
    • (2010) Phil. Trans. R. Soc. B , vol.365 , pp. 1255-1263
    • Sniegowski, P.D.1    Gerrish, P.J.2
  • 68
    • 0034765995 scopus 로고    scopus 로고
    • Direct estimate of the mutation rate and the distribution of fitness effects in the yeast Saccharomyces cerevisiae
    • Wloch D, Szafraniec K, Borts R, Korona R. 2001 Direct estimate of the mutation rate and the distribution of fitness effects in the yeast Saccharomyces cerevisiae. Genetics 159, 441-452. (Pubitemid 33035091)
    • (2001) Genetics , vol.159 , Issue.2 , pp. 441-452
    • Wloch, D.M.1    Szafraniec, K.2    Borts, R.H.3    Korona, R.4
  • 69
    • 52049126703 scopus 로고    scopus 로고
    • The stochastic edge in adaptive evolution
    • doi:10.1534/genetics.107.079319
    • Brunet E, Rouzine IM, Wilke CO. 2008 The stochastic edge in adaptive evolution. Genetics 179, 603-620. (doi:10.1534/genetics.107.079319)
    • (2008) Genetics , vol.179 , pp. 603-620
    • Brunet, E.1    Rouzine, I.M.2    Wilke, C.O.3
  • 70
    • 0037457964 scopus 로고    scopus 로고
    • The solitary wave of asexual evolution
    • doi:10.1073/pnas.242719299
    • Rouzine IM, Wakeley J, Coffin JM. 2003 The solitary wave of asexual evolution. Proc. Natl Acad. Sci. USA 100, 587-592. (doi:10.1073/pnas.242719299)
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 587-592
    • Rouzine, I.M.1    Wakeley, J.2    Coffin, J.M.3
  • 71
    • 0025116560 scopus 로고
    • The distribution of allelic effects under mutation and selection
    • doi:10.1017/S0016672300025350
    • Frank SA, Slatkin M. 1990 The distribution of allelic effects under mutation and selection. Genet. Res. 55, 111-117. (doi:10.1017/S0016672300025350)
    • (1990) Genet. Res. , vol.55 , pp. 111-117
    • Frank, S.A.1    Slatkin, M.2
  • 72
    • 84866184100 scopus 로고    scopus 로고
    • Real time forecasting of near-future evolution
    • doi:10.1098/rsif.2012.0119
    • Gerrish PJ, Sniegowski PD. 2012 Real time forecasting of near-future evolution. J. R. Soc. Interface 9, 2268-2278. (doi:10.1098/rsif.2012.0119)
    • (2012) J. R. Soc. Interface , vol.9 , pp. 2268-2278
    • Gerrish, P.J.1    Sniegowski, P.D.2
  • 73
    • 33847247125 scopus 로고    scopus 로고
    • Theory of lethal mutagenesis for viruses
    • doi:10.1128/JVI.01624-06
    • Bull JJ, Sanjuán R, Wilke CO. 2007 Theory of lethal mutagenesis for viruses. J. Virol. 81, 2930-2939. (doi:10.1128/JVI.01624-06)
    • (2007) J. Virol. , vol.81 , pp. 2930-2939
    • Bull, J.J.1    Sanjuán, R.2    Wilke, C.O.3
  • 74
    • 58149335560 scopus 로고    scopus 로고
    • Lethal mutagenesis of bacteria
    • doi:10.1534/genetics.108.091413
    • Bull JJ, Wilke CO. 2008 Lethal mutagenesis of bacteria. Genetics 180, 1061-1070. (doi:10.1534/genetics.108.091413)
    • (2008) Genetics , vol.180 , pp. 1061-1070
    • Bull, J.J.1    Wilke, C.O.2
  • 75
    • 34547511450 scopus 로고    scopus 로고
    • Complete genetic linkage can subvert natural selection
    • doi:10.1073/pnas.0607280104
    • Gerrish PJ, Colato A, Perelson AS, Sniegowski PD. 2007 Complete genetic linkage can subvert natural selection. Proc. Natl Acad. Sci. USA 104, 6266-6271. (doi:10.1073/pnas.0607280104)
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 6266-6271
    • Gerrish, P.J.1    Colato, A.2    Perelson, A.S.3    Sniegowski, P.D.4
  • 76
    • 77958122066 scopus 로고    scopus 로고
    • A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape
    • doi:10.1371/journal.ppat.1001072
    • Agudo R, Ferrer-Orta C, Arias A, de la Higuera I, Perales C, Pérez-Luque R, Verdaguer N, Domingo E. 2010 A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape. PLoS Pathog. 6, e1001072. (doi:10.1371/journal. ppat.1001072)
    • (2010) PLoS Pathog. , vol.6
    • Agudo, R.1    Ferrer-Orta, C.2    Arias, A.3    De La Higuera, I.4    Perales, C.5    Pérez-Luque, R.6    Verdaguer, N.7    Domingo, E.8
  • 77
    • 57349131683 scopus 로고    scopus 로고
    • Determinants of RNA-dependent RNA polymerase (in)fidelity revealed by kinetic analysis of the polymerase encoded by a foot-and-mouth disease virus mutant with reduced sensitivity to ribavirin
    • doi:10.1128/JVI.01297-08
    • Arias A, Arnold JJ, Sierra M, Smidansky ED, Domingo E, Cameron CE. 2008 Determinants of RNA-dependent RNA polymerase (in)fidelity revealed by kinetic analysis of the polymerase encoded by a foot-and-mouth disease virus mutant with reduced sensitivity to ribavirin. J. Virol. 82, 12 346-12 355. (doi:10.1128/JVI.01297-08)
    • (2008) J. Virol. , vol.82 , pp. 12346-12355
    • Arias, A.1    Arnold, J.J.2    Sierra, M.3    Smidansky, E.D.4    Domingo, E.5    Cameron, C.E.6
  • 78
    • 80053164707 scopus 로고    scopus 로고
    • Arbovirus high fidelity variant loses fitness in mosquitoes and mice
    • doi:10.1073/pnas.1111650108
    • Coffey LL, Beeharry Y, Bordería AV, Blanc H, Vignuzzi M. 2011 Arbovirus high fidelity variant loses fitness in mosquitoes and mice. Proc. Natl Acad. Sci. USA 108, 16 038-16 043. (doi:10.1073/pnas.1111650108)
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 16038-16043
    • Coffey, L.L.1    Beeharry, Y.2    Bordería, A.V.3    Blanc, H.4    Vignuzzi, M.5
  • 79
    • 84866166124 scopus 로고    scopus 로고
    • Nucleoside analogue mutagenesis of a singlestranded DNA virus: Evolution and resistance
    • doi:10.1128/JVI.00613-12
    • Domingo-Calap P, Pereira-Gómez M, Sanjuán R. 2012 Nucleoside analogue mutagenesis of a singlestranded DNA virus: evolution and resistance. J. Virol. 86, 9640-9646. (doi:10.1128/JVI.00613-12)
    • (2012) J. Virol. , vol.86 , pp. 9640-9646
    • Domingo-Calap, P.1    Pereira-Gómez, M.2    Sanjuán, R.3
  • 80
    • 84857851921 scopus 로고    scopus 로고
    • Mutational robustness of an RNA virus influences sensitivity to lethal mutagenesis
    • doi:10.1128/JVI.05712-11
    • Graci JD, Gnädig NF, Galarraga JE, Castro C, Vignuzzi M, Cameron CE. 2012 Mutational robustness of an RNA virus influences sensitivity to lethal mutagenesis. J. Virol. 86, 2869-2873. (doi:10.1128/JVI.05712-11)
    • (2012) J. Virol. , vol.86 , pp. 2869-2873
    • Graci, J.D.1    Gnädig, N.F.2    Galarraga, J.E.3    Castro, C.4    Vignuzzi, M.5    Cameron, C.E.6
  • 81
    • 0038809107 scopus 로고    scopus 로고
    • A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity
    • doi:10.1073/pnas.1232294100
    • Pfeiffer JK, Kirkegaard K. 2003 A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity. Proc. Natl Acad. Sci. USA 100, 7289-7294. (doi:10.1073/pnas.1232294100)
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 7289-7294
    • Pfeiffer, J.K.1    Kirkegaard, K.2
  • 82
    • 34347327212 scopus 로고    scopus 로고
    • Selection for robustness in mutagenized RNA viruses
    • doi:10.1371/journal.pgen.0030093
    • Sanjuán R, Cuevas JM, Furió V, Holmes EC, Moya A. 2007 Selection for robustness in mutagenized RNA viruses. PLoS Genet. 3, e93. (doi:10.1371/journal.pgen.0030093)
    • (2007) PLoS Genet. , vol.3
    • Sanjuán, R.1    Cuevas, J.M.2    Furió, V.3    Holmes, E.C.4    Moya, A.5
  • 84
    • 84966172880 scopus 로고
    • On the change of population fitness by natural selection
    • doi:10.1038/hdy.1958.21
    • Kimura M. 1958 On the change of population fitness by natural selection. Heredity 12, 145-167. (doi:10.1038/hdy.1958.21)
    • (1958) Heredity , vol.12 , pp. 145-167
    • Kimura, M.1
  • 85
    • 0025886466 scopus 로고
    • A constant rate of spontaneous mutation in DNA-based microbes
    • doi:10.1073/pnas.88.16.7160
    • Drake J. 1991 A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl Acad. Sci. USA 88, 7160-7164. (doi:10.1073/pnas.88.16.7160)
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 7160-7164
    • Drake, J.1
  • 86
    • 0027221640 scopus 로고
    • Rates of spontaneous mutation among RNA viruses
    • doi:10.1073/pnas.90.9.4171
    • Drake J. 1993 Rates of spontaneous mutation among RNA viruses. Proc. Natl Acad. Sci. USA 90, 4171-4175. (doi:10.1073/pnas.90.9.4171)
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 4171-4175
    • Drake, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.