메뉴 건너뛰기




Volumn 7, Issue AUG, 2016, Pages

Current state of knowledge in microbial degradation of polycyclic aromatic hydrocarbons (PAHs): A review

Author keywords

Algae; Bacteria; Biodegradation; Fungi; Polycyclic aromatic hydrocarbons (PAHs)

Indexed keywords

CYTOCHROME P450; DIOXYGENASE; ENZYME; EPOXIDE HYDROLASE; LIGNINOLYTIC ENZYME; NAPHTHALENE; PHENANTHRENE; POLYCYCLIC AROMATIC HYDROCARBON; RNA 16S; UNCLASSIFIED DRUG;

EID: 84989325797     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2016.01369     Document Type: Review
Times cited : (1017)

References (264)
  • 1
    • 84971649228 scopus 로고    scopus 로고
    • A review on polycyclic aromatic hydrocarbons: source, environmental impact, effect on human health and remediation
    • Abdel-Shafy, H. I., and Mansour, M. S. M. (2016). A review on polycyclic aromatic hydrocarbons: source, environmental impact, effect on human health and remediation. Egypt. J. Petrol. 25, 107-123. doi: 10.1016/j.ejpe.2015.03.011
    • (2016) Egypt. J. Petrol , vol.25 , pp. 107-123
    • Abdel-Shafy, H.I.1    Mansour, M.S.M.2
  • 2
    • 0003440508 scopus 로고
    • Acenaphthene, Acenaphthylene, Anthracene, Benzo[a]anthracene, Benzo[a]pyrene, Benzo[b]fluoranthene, Benzo[g,i,h]perylene, Benzo[k]fluoranthene, Chrysene, Dibenzo[a,h]anthracene, Fluoranthene, Fluorene, Indeno[1,2,3-c,d]pyrene, Phenanthrene, Pyrene. Atlanta, GA: Agency for Toxic Substances and Disease Registry
    • Agency for Toxic Substances and Disease Registry [ATSDR] (1990). Toxicological profile for polycyclic aromatic hydrocarbons. Acenaphthene, Acenaphthylene, Anthracene, Benzo[a]anthracene, Benzo[a]pyrene, Benzo[b]fluoranthene, Benzo[g,i,h]perylene, Benzo[k]fluoranthene, Chrysene, Dibenzo[a,h]anthracene, Fluoranthene, Fluorene, Indeno[1,2,3-c,d]pyrene, Phenanthrene, Pyrene. Atlanta, GA: Agency for Toxic Substances and Disease Registry
    • (1990) Toxicological profile for polycyclic aromatic hydrocarbons
  • 3
    • 0034666852 scopus 로고    scopus 로고
    • Aging bioavailability, and overestimation of risk from environmental pollutants
    • Alexander, M. (2000). Aging bioavailability, and overestimation of risk from environmental pollutants. Environ. Sci. Technol. 34, 4259-4265
    • (2000) Environ. Sci. Technol , vol.34 , pp. 4259-4265
    • Alexander, M.1
  • 4
    • 66249134249 scopus 로고    scopus 로고
    • Bacterial communities from shoreline environments (costa da morte, northwestern Spain) affected by the prestige oil spill
    • Alonso-Gutierrez, J., Figueras, A., Albaiges, J., Jimenez, N., Vinas, M., Solanas, A. M., et al. (2009). Bacterial communities from shoreline environments (costa da morte, northwestern Spain) affected by the prestige oil spill. Appl. Environ. Microbiol. 75, 3407-3418. doi: 10.1128/AEM.01776-08
    • (2009) Appl. Environ. Microbiol , vol.75 , pp. 3407-3418
    • Alonso-Gutierrez, J.1    Figueras, A.2    Albaiges, J.3    Jimenez, N.4    Vinas, M.5    Solanas, A.M.6
  • 5
    • 0035370087 scopus 로고    scopus 로고
    • The identification of microorganisms by fluorescence in situ hybridisation
    • Amann, R., Fuchs, B. M., and Behrens, S. (2001). The identification of microorganisms by fluorescence in situ hybridisation. Curr. Opin. Biotechnol. 12, 231-236. doi: 10.1016/S0958-1669(00)00204-4
    • (2001) Curr. Opin. Biotechnol , vol.12 , pp. 231-236
    • Amann, R.1    Fuchs, B.M.2    Behrens, S.3
  • 6
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W., and Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169
    • (1995) Microbiol. Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 7
    • 0012938661 scopus 로고    scopus 로고
    • Incomplete degradation of polycyclic aromatic hydrocarbons in soil inoculated with wood-rotting fungi and their effect on the indigenous soil bacteria
    • Andersson, B. E., Lundstedt, S., Tornberg, K., Schnurer, Y., Oberg, L. G., and Mattiasson, B. (2003). Incomplete degradation of polycyclic aromatic hydrocarbons in soil inoculated with wood-rotting fungi and their effect on the indigenous soil bacteria. Environ. Toxicol. Chem. 22, 1238-1243. doi: 10.1002/etc.5620220608
    • (2003) Environ. Toxicol. Chem , vol.22 , pp. 1238-1243
    • Andersson, B.E.1    Lundstedt, S.2    Tornberg, K.3    Schnurer, Y.4    Oberg, L.G.5    Mattiasson, B.6
  • 8
    • 4444289448 scopus 로고    scopus 로고
    • Bacterial communities and enzyme activities of PAHs polluted soils
    • Andreoni, V., Cavalca, L., Rao, M. A., Nocerino, G., Bernasconi, S., Dell'Amico, E., et al. (2004). Bacterial communities and enzyme activities of PAHs polluted soils. Chemosphere 57, 401-412. doi: 10.1016/j.chemosphere.2004.06.013
    • (2004) Chemosphere , vol.57 , pp. 401-412
    • Andreoni, V.1    Cavalca, L.2    Rao, M.A.3    Nocerino, G.4    Bernasconi, S.5    Dell'Amico, E.6
  • 9
    • 34547098835 scopus 로고    scopus 로고
    • Bioremediation and monitoring of aromatic-polluted habitats
    • Andreoni, V., and Gianfreda, L. (2007). Bioremediation and monitoring of aromatic-polluted habitats. Appl. Microbiol. Biotechnol. 76, 287-308. doi: 10.1007/s00253-007-1018-5
    • (2007) Appl. Microbiol. Biotechnol , vol.76 , pp. 287-308
    • Andreoni, V.1    Gianfreda, L.2
  • 10
    • 23744475412 scopus 로고    scopus 로고
    • Recent advances in the bioremediation of persistent organic pollutants via biomolecular engineering
    • Ang, J. L., Zhao, H., and Obbard, J. P. (2005). Recent advances in the bioremediation of persistent organic pollutants via biomolecular engineering. Enzyme Microb. Technol 37, 487-496. doi: 10.1016/j.enzmictec.2004.07.024
    • (2005) Enzyme Microb. Technol , vol.37 , pp. 487-496
    • Ang, J.L.1    Zhao, H.2    Obbard, J.P.3
  • 11
    • 0042527612 scopus 로고    scopus 로고
    • Optimization of soil physical and chemical conditions for the bioremediation of creosote-contaminated soil
    • Atagana, H. I., Haynes, R. J., and Wallis, F. M. (2003). Optimization of soil physical and chemical conditions for the bioremediation of creosote-contaminated soil. Biodegradation 14, 297-307. doi: 10.1023/A:1024730722751
    • (2003) Biodegradation , vol.14 , pp. 297-307
    • Atagana, H.I.1    Haynes, R.J.2    Wallis, F.M.3
  • 12
    • 0002974956 scopus 로고    scopus 로고
    • Bioremediation
    • 2nd Edn, eds A. C. Demain and J. E. Davies (Washington, DC: ASM Press)
    • Atlas, R. M., and Unterman, R. (1999). "Bioremediation," in Manual of Industrial Microbiology and Biotechnology, 2nd Edn, eds A. C. Demain and J. E. Davies (Washington, DC: ASM Press), 666-681
    • (1999) Manual of Industrial Microbiology and Biotechnology , pp. 666-681
    • Atlas, R.M.1    Unterman, R.2
  • 13
    • 0037641131 scopus 로고    scopus 로고
    • Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR
    • Baldwin, B. R., Nakatsu, C. H., and Nies, L. (2003). Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl. Environ. Microbiol. 69, 3350-3358. doi: 10.1128/AEM.69.6.3350-3358.2003
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 3350-3358
    • Baldwin, B.R.1    Nakatsu, C.H.2    Nies, L.3
  • 14
    • 21344459064 scopus 로고    scopus 로고
    • Bioremediation of polycyclic aromatic hydrocarbons: current knowledge and future directions
    • Bamforth, S. M., and Singleton, I. (2005). Bioremediation of polycyclic aromatic hydrocarbons: current knowledge and future directions. J. Chem. Technol. Biotechnol. 80, 723-736. doi: 10.1002/jctb.1276
    • (2005) J. Chem. Technol. Biotechnol , vol.80 , pp. 723-736
    • Bamforth, S.M.1    Singleton, I.2
  • 15
    • 21344441499 scopus 로고    scopus 로고
    • Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics
    • Basta, T., Buerger, S., and Stolz, A. (2005). Structural and replicative diversity of large plasmids from sphingomonads that degrade polycyclic aromatic compounds and xenobiotics. Microbiology 151(Pt 6), 2025-2037. doi: 10.1099/mic.0.27965-0
    • (2005) Microbiology , vol.151 , pp. 2025-2037
    • Basta, T.1    Buerger, S.2    Stolz, A.3
  • 16
    • 74249121914 scopus 로고    scopus 로고
    • Characteristics of a solid coal tar sampled from a contaminated soil and of the organics transferred into water
    • Benhabib, K., Faure, P., Sardin, M., and Simonnot, M. O. (2010). Characteristics of a solid coal tar sampled from a contaminated soil and of the organics transferred into water. Fuel 89, 352-359. doi: 10.1016/j.fuel.2009.06.009
    • (2010) Fuel , vol.89 , pp. 352-359
    • Benhabib, K.1    Faure, P.2    Sardin, M.3    Simonnot, M.O.4
  • 17
    • 0035675109 scopus 로고    scopus 로고
    • In situ bioremediation of groundwater contaminated with phenols, BTEX and PAHs using nitrate as electron acceptor
    • Bewley, R. J. F., and Webb, G. (2001). In situ bioremediation of groundwater contaminated with phenols, BTEX and PAHs using nitrate as electron acceptor. Land Contam. Reclam. 9, 335-347
    • (2001) Land Contam. Reclam , vol.9 , pp. 335-347
    • Bewley, R.J.F.1    Webb, G.2
  • 18
    • 0030861449 scopus 로고    scopus 로고
    • Enzymatic mechanisms involved in phenanthrene degradation by the white rot fungus Pleurotus ostreatus
    • Bezalel, L., Hadar, Y., and Cerniglia, C. E. (1997). Enzymatic mechanisms involved in phenanthrene degradation by the white rot fungus Pleurotus ostreatus. Appl. Environ. Microbiol. 63, 2495-2501
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 2495-2501
    • Bezalel, L.1    Hadar, Y.2    Cerniglia, C.E.3
  • 19
    • 0030006097 scopus 로고    scopus 로고
    • Initial oxidation products in the metabolism of pyrene, anthracene, fluorene, and dibenzothiophene by the white rot fungus Pleurotus ostreatus
    • Bezalel, L., Hadar, Y., Fu, P. P., Freeman, J. P., and Cerniglia, C. E. (1996). Initial oxidation products in the metabolism of pyrene, anthracene, fluorene, and dibenzothiophene by the white rot fungus Pleurotus ostreatus. Appl. Environ. Microbiol. 62, 2554-2559
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 2554-2559
    • Bezalel, L.1    Hadar, Y.2    Fu, P.P.3    Freeman, J.P.4    Cerniglia, C.E.5
  • 20
    • 0034694124 scopus 로고    scopus 로고
    • The effect of dibenzo[a,1]pyrene and benzo[a]pyrene on human diploid lung fibroblasts: the induction of DNA adducts, expression of p53 and p21(WAF1) proteins and cell cycle distribution
    • Binkova, B., Giguere, Y., Rossner, P. Jr., Dostal, M., and Sram, R. J. (2000). The effect of dibenzo[a,1]pyrene and benzo[a]pyrene on human diploid lung fibroblasts: the induction of DNA adducts, expression of p53 and p21(WAF1) proteins and cell cycle distribution. Mutat. Res. 471, 57-70. doi: 10.1016/S1383-5718(00)00111-X
    • (2000) Mutat. Res , vol.471 , pp. 57-70
    • Binkova, B.1    Giguere, Y.2    Rossner, P.3    Dostal, M.4    Sram, R.J.5
  • 21
    • 44449119442 scopus 로고    scopus 로고
    • Metagenomics: exploring unseen communities
    • Blow, N. (2008). Metagenomics: exploring unseen communities. Nature 453, 687-690. doi: 10.1038/453687a
    • (2008) Nature , vol.453 , pp. 687-690
    • Blow, N.1
  • 22
    • 0016928745 scopus 로고
    • Polycyclic aromatic compounds in nature
    • Blumer, M. (1976). Polycyclic aromatic compounds in nature. Sci. Am. 234, 35-45. doi: 10.1038/scientificamerican0376-34
    • (1976) Sci. Am , vol.234 , pp. 35-45
    • Blumer, M.1
  • 23
    • 0029901336 scopus 로고    scopus 로고
    • Fluorene oxidation in vivo by phanerochaete chrysosporium and in vitro during manganese peroxidase-dependent lipid peroxidation
    • Bogan, B. W., Lamar, R. T., and Hammel, K. E. (1996a). Fluorene oxidation in vivo by phanerochaete chrysosporium and in vitro during manganese peroxidase-dependent lipid peroxidation. Appl. Environ. Microbiol. 62, 1788-1792
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 1788-1792
    • Bogan, B.W.1    Lamar, R.T.2    Hammel, K.E.3
  • 24
    • 0029737394 scopus 로고    scopus 로고
    • Expression of lip genes during growth in soil and oxidation of anthracene by Phanerochaete chrysosporium
    • Bogan, B. W., Schoenike, B., Lamar, R. T., and Cullen, D. (1996b). Expression of lip genes during growth in soil and oxidation of anthracene by Phanerochaete chrysosporium. Appl. Environ. Microbiol. 62, 3697-3703
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 3697-3703
    • Bogan, B.W.1    Schoenike, B.2    Lamar, R.T.3    Cullen, D.4
  • 25
    • 80051667062 scopus 로고    scopus 로고
    • Biodegradation of aromatic hydrocarbons by Haloarchaea and their use for the reduction of the chemical oxygen demand of hypersaline petroleum produced water
    • Bonfa, M. R., Grossman, M. J., Mellado, E., and Durrant, L. R. (2011). Biodegradation of aromatic hydrocarbons by Haloarchaea and their use for the reduction of the chemical oxygen demand of hypersaline petroleum produced water. Chemosphere 84, 1671-1676. doi: 10.1016/j.chemosphere.2011.05.005
    • (2011) Chemosphere , vol.84 , pp. 1671-1676
    • Bonfa, M.R.1    Grossman, M.J.2    Mellado, E.3    Durrant, L.R.4
  • 26
    • 0034010272 scopus 로고    scopus 로고
    • Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures
    • Boonchan, S., Britz, M. L., and Stanley, G. A. (2000). Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures. Appl. Environ. Microbiol. 66, 1007-1019. doi: 10.1128/AEM.66.3.1007-1019.2000
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 1007-1019
    • Boonchan, S.1    Britz, M.L.2    Stanley, G.A.3
  • 27
    • 0037290145 scopus 로고    scopus 로고
    • Synergistic relationships in algal-bacterial microcosms for the treatment of aromatic pollutants
    • Borde, X., Guieysse, B., Delgado, O., Munoz, R., Hatti-Kaul, R., Nugier-Chauvin, C., et al. (2003). Synergistic relationships in algal-bacterial microcosms for the treatment of aromatic pollutants. Bioresour. Technol. 86, 293-300. doi: 10.1016/S0960-8524(02)00074-3
    • (2003) Bioresour. Technol , vol.86 , pp. 293-300
    • Borde, X.1    Guieysse, B.2    Delgado, O.3    Munoz, R.4    Hatti-Kaul, R.5    Nugier-Chauvin, C.6
  • 28
    • 0343485080 scopus 로고    scopus 로고
    • Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10
    • Bosch, R., Garcia-Valdes, E., and Moore, E. R. (2000). Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10. Gene 245, 65-74. doi: 10.1016/S0378-1119(00)00038-X
    • (2000) Gene , vol.245 , pp. 65-74
    • Bosch, R.1    Garcia-Valdes, E.2    Moore, E.R.3
  • 29
    • 84892187901 scopus 로고    scopus 로고
    • Geomicrobiological linkages between short-chain alkane consumption and sulfate reduction rates in seep sediments
    • Bose, A., Rogers, D. R., Adams, M. M., Joye, S. B., and Girguis, P. R. (2013). Geomicrobiological linkages between short-chain alkane consumption and sulfate reduction rates in seep sediments. Front. Microbiol. 4:386. doi: 10.3389/fmicb.2013.00386
    • (2013) Front. Microbiol , vol.4 , pp. 386
    • Bose, A.1    Rogers, D.R.2    Adams, M.M.3    Joye, S.B.4    Girguis, P.R.5
  • 30
    • 0030618371 scopus 로고    scopus 로고
    • Mass transfer limitation of biotransformation: quantifying bioavailability
    • Bosma, T. N. P., Middeldorp, P. J. M., Schraa, G., and Zender, A. J. B. (1997). Mass transfer limitation of biotransformation: quantifying bioavailability. Environ. Sci. Technol. 31, 248-252. doi: 10.1080/08927014.2012.662641
    • (1997) Environ. Sci. Technol , vol.31 , pp. 248-252
    • Bosma, T.N.P.1    Middeldorp, P.J.M.2    Schraa, G.3    Zender, A.J.B.4
  • 31
    • 33744547327 scopus 로고    scopus 로고
    • Development of metagenomic DNA shuffling for the construction of a xenobiotic gene
    • Boubakri, H., Beuf, M., Simonet, P., and Vogel, T. M. (2006). Development of metagenomic DNA shuffling for the construction of a xenobiotic gene. Gene 375, 87-94. doi: 10.1016/j.gene.2006.02.027
    • (2006) Gene , vol.375 , pp. 87-94
    • Boubakri, H.1    Beuf, M.2    Simonet, P.3    Vogel, T.M.4
  • 32
    • 0028951884 scopus 로고
    • Degradation of polycyclic aromatic hydrocarbons by pure strains and by defined strain associations: inhibition phenomena and cometabolism
    • Bouchez, M., Blanchet, D., and Vandecasteele, J. P. (1995). Degradation of polycyclic aromatic hydrocarbons by pure strains and by defined strain associations: inhibition phenomena and cometabolism. Appl. Microbiol. Biotechnol. 43, 156-164. doi: 10.1007/BF00170638
    • (1995) Appl. Microbiol. Biotechnol , vol.43 , pp. 156-164
    • Bouchez, M.1    Blanchet, D.2    Vandecasteele, J.P.3
  • 33
    • 0002984318 scopus 로고
    • In situ processes for bioremediation of BTEX and petroleum fuel products
    • eds L. Y. Young and C. E. Cerniglia (New York, NY: Wiley-Liss)
    • Bowlen, G. F., and Kosson, D. S. (1995). "In situ processes for bioremediation of BTEX and petroleum fuel products," in Microbial Transformation and Degradation of Toxic Organic Chemicals, eds L. Y. Young and C. E. Cerniglia (New York, NY: Wiley-Liss), 514-544
    • (1995) Microbial Transformation and Degradation of Toxic Organic Chemicals , pp. 514-544
    • Bowlen, G.F.1    Kosson, D.S.2
  • 34
    • 0030816593 scopus 로고    scopus 로고
    • The effects of motorway runoff on freshwater ecosystems: 3. Toxicant confirmation
    • Boxall, A. B., and Maltby, L. (1997). The effects of motorway runoff on freshwater ecosystems: 3. Toxicant confirmation. Arch. Environ. Contam. Toxicol. 33, 9-16. doi: 10.1007/s002449900216
    • (1997) Arch. Environ. Contam. Toxicol , vol.33 , pp. 9-16
    • Boxall, A.B.1    Maltby, L.2
  • 35
    • 32044473046 scopus 로고    scopus 로고
    • Biodegradation of petroleum hydrocarbons in seawater at low temperatures (0-5 degrees C) and bacterial communities associated with degradation
    • Brakstad, O. G., and Bonaunet, K. (2006). Biodegradation of petroleum hydrocarbons in seawater at low temperatures (0-5 degrees C) and bacterial communities associated with degradation. Biodegradation 17, 71-82. doi: 10.1007/s10532-005-3342-8
    • (2006) Biodegradation , vol.17 , pp. 71-82
    • Brakstad, O.G.1    Bonaunet, K.2
  • 36
    • 19944394252 scopus 로고    scopus 로고
    • Microbial diversity during biodegradation of crude oil in seawater from the North Sea
    • Brakstad, O. G., and Lodeng, A. G. (2005). Microbial diversity during biodegradation of crude oil in seawater from the North Sea. Microb. Ecol. 49, 94-103. doi: 10.1007/s00248-003-0225-6
    • (2005) Microb. Ecol , vol.49 , pp. 94-103
    • Brakstad, O.G.1    Lodeng, A.G.2
  • 37
    • 0000071305 scopus 로고
    • Stability of Bradyrhizobium japonicum inoculants after introduction into soil
    • Brunel, B., Cleyet-Marel, J. C., Normand, P., and Bardin, R. (1988). Stability of Bradyrhizobium japonicum inoculants after introduction into soil. Appl. Environ. Microbiol. 54, 2636-2642
    • (1988) Appl. Environ. Microbiol , vol.54 , pp. 2636-2642
    • Brunel, B.1    Cleyet-Marel, J.C.2    Normand, P.3    Bardin, R.4
  • 38
    • 3242790188 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbons, black carbon, and molecular markers in soils of Switzerland
    • Bucheli, T. D., Blum, F., Desaules, A., and Gustafsson, O. (2004). Polycyclic aromatic hydrocarbons, black carbon, and molecular markers in soils of Switzerland. Chemosphere 56, 1061-1076. doi: 10.1016/j.chemosphere.2004.06.002
    • (2004) Chemosphere , vol.56 , pp. 1061-1076
    • Bucheli, T.D.1    Blum, F.2    Desaules, A.3    Gustafsson, O.4
  • 39
    • 84908513108 scopus 로고    scopus 로고
    • Next generation sequencing technology: advances and applications
    • Buermans, H. P., and den Dunnen, J. T. (2014). Next generation sequencing technology: advances and applications. Biochim. Biophys. Acta 1842, 1932-1941. doi: 10.1016/j.bbadis.2014.06.015
    • (2014) Biochim. Biophys. Acta , vol.1842 , pp. 1932-1941
    • Buermans, H.P.1    den Dunnen, J.T.2
  • 40
    • 0034812820 scopus 로고    scopus 로고
    • Comparison of ex situ and in situ bioremediation of unsaturated soils contaminated by petroleum
    • Carberry, J. B., and Wik, J. (2001). Comparison of ex situ and in situ bioremediation of unsaturated soils contaminated by petroleum. J. Environ. Sci. Health A Tox. Hazard. Subst. Environ. Eng. 36, 1491-1503. doi: 10.1081/ESE-100105726
    • (2001) J. Environ. Sci. Health A Tox. Hazard. Subst. Environ. Eng , vol.36 , pp. 1491-1503
    • Carberry, J.B.1    Wik, J.2
  • 41
    • 0030812406 scopus 로고    scopus 로고
    • The effect of inorganic and organic supplements on the microbial degradation of phenanthrene and pyrene in soils
    • Carmichael, L. M., and Pfaender, F. K. (1997). The effect of inorganic and organic supplements on the microbial degradation of phenanthrene and pyrene in soils. Biodegradation 8, 1-13. doi: 10.1023/A:1008258720649
    • (1997) Biodegradation , vol.8 , pp. 1-13
    • Carmichael, L.M.1    Pfaender, F.K.2
  • 43
    • 0021700508 scopus 로고
    • Microbial metabolism of polycyclic aromatic hydrocarbons
    • Cerniglia, C. E. (1984). Microbial metabolism of polycyclic aromatic hydrocarbons. Adv. Appl. Microbiol. 30, 31-71. doi: 10.1016/S0065-2164(08)70052-2
    • (1984) Adv. Appl. Microbiol , vol.30 , pp. 31-71
    • Cerniglia, C.E.1
  • 44
    • 33847168352 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • Cerniglia, C. E. (1992). Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 3, 351-368. doi: 10.1007/BF00129093
    • (1992) Biodegradation , vol.3 , pp. 351-368
    • Cerniglia, C.E.1
  • 45
    • 0018789969 scopus 로고
    • Algal oxidation of aromatic hydrocarbons: formation of 1-naphthol from naphthalene by Agmenellum quadruplicatum, strain PR-6
    • Cerniglia, C. E., Gibson, D. T., and Van Baalen, C. (1979). Algal oxidation of aromatic hydrocarbons: formation of 1-naphthol from naphthalene by Agmenellum quadruplicatum, strain PR-6. Biochem. Biophys. Res. Commun. 88, 50-58. doi: 10.1016/0006-291X(79)91695-4
    • (1979) Biochem. Biophys. Res. Commun , vol.88 , pp. 50-58
    • Cerniglia, C.E.1    Gibson, D.T.2    Van Baalen, C.3
  • 47
    • 0018905587 scopus 로고
    • Oxidation of naphthalene by cyanobacteria and microalgae
    • Cerniglia, C. E., Gibson, D. T., and Van Baalen, C. (1980b). Oxidation of naphthalene by cyanobacteria and microalgae. J. Gen. Microbiol. 116, 495-500
    • (1980) J. Gen. Microbiol , vol.116 , pp. 495-500
    • Cerniglia, C.E.1    Gibson, D.T.2    Van Baalen, C.3
  • 48
    • 0000681259 scopus 로고
    • "Microbial degradation of polycyclic aromatic hydrocarbons (PAH) in the aquatic environment,"
    • ed. U. Varanasi (Boca Raton, FL: CRC Press)
    • Cerniglia, C. E., and Heitkamp, M. A. (1989). "Microbial degradation of polycyclic aromatic hydrocarbons (PAH) in the aquatic environment," in Metabolism of polycyclic aromatic hydrocarbons in the aquatic environment, ed. U. Varanasi (Boca Raton, FL: CRC Press)
    • (1989) Metabolism of polycyclic aromatic hydrocarbons in the aquatic environment
    • Cerniglia, C.E.1    Heitkamp, M.A.2
  • 49
    • 79951856313 scopus 로고    scopus 로고
    • Degradation of polycyclic aromatic hydrocarbons by fungi
    • eds K. N. Timmis, T. J. McGenity, J. R. van der Meer, and V. de Lorenzo (Berlin: Springer)
    • Cerniglia, C. E., and Sutherland, J. B. (2010). "Degradation of polycyclic aromatic hydrocarbons by fungi," in Handbook of Hydrocarbon and Lipid Microbiology, eds K. N. Timmis, T. J. McGenity, J. R. van der Meer, and V. de Lorenzo (Berlin: Springer), 2080-2110
    • (2010) Handbook of Hydrocarbon and Lipid Microbiology , pp. 2080-2110
    • Cerniglia, C.E.1    Sutherland, J.B.2
  • 50
    • 33748256686 scopus 로고    scopus 로고
    • Factors inhibiting bioremediation of soil contaminated with weathered oils and drill cuttings
    • Chaillan, F., Chaineau, C. H., Point, V., Saliot, A., and Oudot, J. (2006). Factors inhibiting bioremediation of soil contaminated with weathered oils and drill cuttings. Environ. Pollut. 144, 255-265. doi: 10.1016/j.envpol.2005.12.016
    • (2006) Environ. Pollut , vol.144 , pp. 255-265
    • Chaillan, F.1    Chaineau, C.H.2    Point, V.3    Saliot, A.4    Oudot, J.5
  • 51
    • 33750283857 scopus 로고    scopus 로고
    • Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
    • Chain, P. S., Denef, V. J., Konstantinidis, K. T., Vergez, L. M., Agullo, L., Reyes, V. L., et al. (2006). Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc. Natl. Acad. Sci. U.S.A. 103, 15280-15287. doi: 10.1073/pnas.0606924103
    • (2006) Proc. Natl. Acad. Sci. U.S.A , vol.103 , pp. 15280-15287
    • Chain, P.S.1    Denef, V.J.2    Konstantinidis, K.T.3    Vergez, L.M.4    Agullo, L.5    Reyes, V.L.6
  • 52
    • 84865618109 scopus 로고    scopus 로고
    • An insight into the origin and functional evolution of bacterial aromatic ring-hydroxylating oxygenases
    • Chakraborty, J., Ghosal, D., Dutta, A., and Dutta, T. K. (2012). An insight into the origin and functional evolution of bacterial aromatic ring-hydroxylating oxygenases. J. Biomol. Struct. Dyn. 30, 419-436. doi: 10.1080/07391102.2012.682208
    • (2012) J. Biomol. Struct. Dyn , vol.30 , pp. 419-436
    • Chakraborty, J.1    Ghosal, D.2    Dutta, A.3    Dutta, T.K.4
  • 53
    • 33750556025 scopus 로고    scopus 로고
    • Removal and biodegradation of polycyclic aromatic hydrocarbons by Selenastrum capricornutum
    • Chan, S. M., Luan, T., Wong, M. H., and Tam, N. F. (2006). Removal and biodegradation of polycyclic aromatic hydrocarbons by Selenastrum capricornutum. Environ. Toxicol. Chem. 7, 1772-1779. doi: 10.1897/05-354R.1
    • (2006) Environ. Toxicol. Chem , vol.7 , pp. 1772-1779
    • Chan, S.M.1    Luan, T.2    Wong, M.H.3    Tam, N.F.4
  • 54
    • 84914112315 scopus 로고    scopus 로고
    • Measuring bioavailable PAHs in estuarine water using semipermeable membrane devices with performance reference compounds
    • Chang, W. T., Fang, M. D., Lee, C. L., and Brimblecombe, P. (2014). Measuring bioavailable PAHs in estuarine water using semipermeable membrane devices with performance reference compounds. Mar. Pollut. Bull. 89, 376-383. doi: 10.1016/j.marpolbul.2014.09.031
    • (2014) Mar. Pollut. Bull , vol.89 , pp. 376-383
    • Chang, W.T.1    Fang, M.D.2    Lee, C.L.3    Brimblecombe, P.4
  • 55
    • 20344382757 scopus 로고    scopus 로고
    • Effects of nutrient concentration on the biodegradation of crude oil and associated microbial populations in the soil
    • Chaîneau, C. H., Rougeux, G., Yéprémian, C., and Oudot, J. (2005). Effects of nutrient concentration on the biodegradation of crude oil and associated microbial populations in the soil. Soil Biol. Biochem. 37, 1490-1497. doi: 10.1016/j.soilbio.2005.01.012
    • (2005) Soil Biol. Biochem , vol.37 , pp. 1490-1497
    • Chaîneau, C.H.1    Rougeux, G.2    Yéprémian, C.3    Oudot, J.4
  • 56
    • 21644438217 scopus 로고    scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons by soil fungi
    • Clemente, A. R., Anazawa, T. A., and Durrant, L. R. (2001). Biodegradation of polycyclic aromatic hydrocarbons by soil fungi. Braz. J. Microbiol. 32, 255-261. doi: 10.1590/S1517-83822001000400001
    • (2001) Braz. J. Microbiol , vol.32 , pp. 255-261
    • Clemente, A.R.1    Anazawa, T.A.2    Durrant, L.R.3
  • 58
    • 25144483449 scopus 로고    scopus 로고
    • Extensive sorption of organic compounds to black carbon, coal, and kerogen in sediments and soils: mechanisms and consequences for distribution, bioaccumulation, and biodegradation
    • Cornelissen, G., Gustafsson, O., Bucheli, T. D., Jonker, M. T., Koelmans, A. A., and van Noort, P. C. (2005). Extensive sorption of organic compounds to black carbon, coal, and kerogen in sediments and soils: mechanisms and consequences for distribution, bioaccumulation, and biodegradation. Environ. Sci. Technol. 39, 6881-6895. doi: 10.1021/es050191b
    • (2005) Environ. Sci. Technol , vol.39 , pp. 6881-6895
    • Cornelissen, G.1    Gustafsson, O.2    Bucheli, T.D.3    Jonker, M.T.4    Koelmans, A.A.5    van Noort, P.C.6
  • 59
    • 33846072571 scopus 로고    scopus 로고
    • Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters
    • Coulon, F., McKew, B. A., Osborn, A. M., McGenity, T. J., and Timmis, K. N. (2007). Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environ. Microbiol. 9, 177-186. doi: 10.1111/j.1462-2920.2006.01126.x
    • (2007) Environ. Microbiol , vol.9 , pp. 177-186
    • Coulon, F.1    McKew, B.A.2    Osborn, A.M.3    McGenity, T.J.4    Timmis, K.N.5
  • 60
    • 84897595508 scopus 로고    scopus 로고
    • Marine coastal sediments microbial hydrocarbon degradation processes: contribution of experimental ecology in the omics' era
    • Cravo-Laureau, C., and Duran, R. (2014). Marine coastal sediments microbial hydrocarbon degradation processes: contribution of experimental ecology in the omics' era. Front. Microbiol. 5:39. doi: 10.3389/fmicb.2014.00039
    • (2014) Front. Microbiol , vol.5 , pp. 39
    • Cravo-Laureau, C.1    Duran, R.2
  • 61
    • 64849116469 scopus 로고    scopus 로고
    • Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge
    • Cui, Z., Lai, Q., Dong, C., and Shao, Z. (2008). Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge. Environ. Microbiol. 10, 2138-2149. doi: 10.1111/j.1462-2920.2008.01637.x
    • (2008) Environ. Microbiol , vol.10 , pp. 2138-2149
    • Cui, Z.1    Lai, Q.2    Dong, C.3    Shao, Z.4
  • 62
    • 0036089919 scopus 로고    scopus 로고
    • Utilization of mixtures of polycyclic aromatic hydrocarbons by bacteria isolated from contaminated sediment
    • Dean-Ross, D., Moody, J., and Cerniglia, C. E. (2002). Utilization of mixtures of polycyclic aromatic hydrocarbons by bacteria isolated from contaminated sediment. FEMS Microbiol. Ecol. 41, 1-7. doi: 10.1111/j.1574-6941.2002.tb00960.x
    • (2002) FEMS Microbiol. Ecol , vol.41 , pp. 1-7
    • Dean-Ross, D.1    Moody, J.2    Cerniglia, C.E.3
  • 63
    • 66449093988 scopus 로고    scopus 로고
    • Microbial community structure and biodegradation activity of particle-associated bacteria in a coal tar contaminated creek
    • Debruyn, J. M., and Sayler, G. S. (2009). Microbial community structure and biodegradation activity of particle-associated bacteria in a coal tar contaminated creek. Environ. Sci. Technol. 43, 3047-3053. doi: 10.1021/es803373y
    • (2009) Environ. Sci. Technol , vol.43 , pp. 3047-3053
    • Debruyn, J.M.1    Sayler, G.S.2
  • 64
    • 33644848891 scopus 로고    scopus 로고
    • Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400
    • Denef, V. J., Klappenbach, J. A., Patrauchan, M. A., Florizone, C., Rodrigues, J. L., Tsoi, T. V., et al. (2006). Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400. Appl. Environ. Microbiol. 72, 585-595. doi: 10.1128/AEM.72.1.585-595.2006
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 585-595
    • Denef, V.J.1    Klappenbach, J.A.2    Patrauchan, M.A.3    Florizone, C.4    Rodrigues, J.L.5    Tsoi, T.V.6
  • 65
    • 28044450599 scopus 로고    scopus 로고
    • Growth substrate-and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400
    • Denef, V. J., Patrauchan, M. A., Florizone, C., Park, J., Tsoi, T. V., Verstraete, W., et al. (2005). Growth substrate-and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400. J. Bacteriol. 187, 7996-8005. doi: 10.1128/JB.187.23.7996-8005.2005
    • (2005) J. Bacteriol , vol.187 , pp. 7996-8005
    • Denef, V.J.1    Patrauchan, M.A.2    Florizone, C.3    Park, J.4    Tsoi, T.V.5    Verstraete, W.6
  • 66
    • 77952890488 scopus 로고    scopus 로고
    • Identification and characterization of genes involved in naphthalene degradation in Rhodococcus opacus R7
    • Di Gennaro, P., Terreni, P., Masi, G., Botti, S., De Ferra, F., and Bestetti, G. (2010). Identification and characterization of genes involved in naphthalene degradation in Rhodococcus opacus R7. Appl. Microbiol. Biotechnol. 87, 297-308. doi: 10.1007/s00253-010-2497-3
    • (2010) Appl. Microbiol. Biotechnol , vol.87 , pp. 297-308
    • Di Gennaro, P.1    Terreni, P.2    Masi, G.3    Botti, S.4    De Ferra, F.5    Bestetti, G.6
  • 67
    • 0026478831 scopus 로고
    • Bacterial metabolism of naphthalene: construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactions
    • Eaton, R. W., and Chapman, P. J. (1992). Bacterial metabolism of naphthalene: construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactions. J. Bacteriol. 174, 7542-7554
    • (1992) J. Bacteriol , vol.174 , pp. 7542-7554
    • Eaton, R.W.1    Chapman, P.J.2
  • 68
    • 0020835324 scopus 로고
    • Polycyclic aromatic hydrocarbons (PAHs) in the terrestrial environment-a review
    • Edwards, N. T. (1983). Polycyclic aromatic hydrocarbons (PAHs) in the terrestrial environment-a review. J. Environ. Qual. 12, 427-441. doi: 10.2134/jeq1983.124427x
    • (1983) J. Environ. Qual , vol.12 , pp. 427-441
    • Edwards, N.T.1
  • 69
    • 84899670363 scopus 로고    scopus 로고
    • Biodegradation of MC252 oil in oil: sand aggregates in a coastal headland beach environment
    • Elango, V., Urbano, M., Lemelle, K. R., and Pardue, J. H. (2014). Biodegradation of MC252 oil in oil: sand aggregates in a coastal headland beach environment. Front. Microbiol. 5:161. doi: 10.3389/fmicb.2014.00161
    • (2014) Front. Microbiol , vol.5 , pp. 161
    • Elango, V.1    Urbano, M.2    Lemelle, K.R.3    Pardue, J.H.4
  • 70
    • 84930572891 scopus 로고    scopus 로고
    • Biodegradation of phenolic and polycyclic aromatic compounds by some algae and cyanobacteria
    • El-Sheekh, M. M., Ghareib, M. M., and Abou-El-Souod, G. W. (2012). Biodegradation of phenolic and polycyclic aromatic compounds by some algae and cyanobacteria. J. Bioremediat. Biodegrad. 3:133. doi: 10.4172/2155-6199.1000133
    • (2012) J. Bioremediat. Biodegrad , vol.3 , pp. 133
    • El-Sheekh, M.M.1    Ghareib, M.M.2    Abou-El-Souod, G.W.3
  • 71
    • 78651193202 scopus 로고
    • Oxidative metabolism of phenanthrene and anthracene by soil pseudomonads
    • Evans, W. C., Fernley, H. N., and Griffiths, E. (1965). Oxidative metabolism of phenanthrene and anthracene by soil pseudomonads. The ring-fission mechanism. Biochem. J. 95, 819-831. doi: 10.1042/bj0950819
    • (1965) The ring-fission mechanism. Biochem. J , vol.95 , pp. 819-831
    • Evans, W.C.1    Fernley, H.N.2    Griffiths, E.3
  • 72
    • 84899687985 scopus 로고    scopus 로고
    • Recent studies in microbial degradation of petroleum hydrocarbons in hypersaline environments
    • Fathepure, B. Z. (2014). Recent studies in microbial degradation of petroleum hydrocarbons in hypersaline environments. Front. Microbiol. 5:173. doi: 10.3389/fmicb.2014.00173
    • (2014) Front. Microbiol , vol.5 , pp. 173
    • Fathepure, B.Z.1
  • 73
    • 0344441370 scopus 로고    scopus 로고
    • Degradation of polycyclic aromatic hydrocarbons and long chain alkanes at 60-70 degrees C by Thermus and Bacillus spp [corrected]
    • Feitkenhauer, H., Muller, R., and Markl, H. (2003). Degradation of polycyclic aromatic hydrocarbons and long chain alkanes at 60-70 degrees C by Thermus and Bacillus spp [corrected]. Biodegradation 14, 367-372. doi: 10.1023/A:1027357615649
    • (2003) Biodegradation , vol.14 , pp. 367-372
    • Feitkenhauer, H.1    Muller, R.2    Markl, H.3
  • 74
    • 0021589718 scopus 로고
    • "The fate of petroleum in marine ecosystems,"
    • ed. R. M. Atlas (New York, NY: Macmillion)
    • Floodgate, G. (1984). "The fate of petroleum in marine ecosystems," in Petroleum Microbiology, ed. R. M. Atlas (New York, NY: Macmillion), 355-398
    • (1984) Petroleum Microbiology , pp. 355-398
    • Floodgate, G.1
  • 75
    • 49449088930 scopus 로고    scopus 로고
    • Anaerobic biodegradation of aromatic hydrocarbons: pathways and prospects
    • Foght, J. (2008). Anaerobic biodegradation of aromatic hydrocarbons: pathways and prospects. J. Mol. Microbiol. Biotechnol. 15, 93-120. doi: 10.1159/000121324
    • (2008) J. Mol. Microbiol. Biotechnol , vol.15 , pp. 93-120
    • Foght, J.1
  • 76
    • 18744374590 scopus 로고    scopus 로고
    • Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns
    • Fromin, N., Hamelin, J., Tarnawski, S., Roesti, D., Jourdain-Miserez, K., Forestier, N., et al. (2002). Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ. Microbiol. 4, 634-643. doi: 10.1046/j.1462-2920.2002.00358.x
    • (2002) Environ. Microbiol , vol.4 , pp. 634-643
    • Fromin, N.1    Hamelin, J.2    Tarnawski, S.3    Roesti, D.4    Jourdain-Miserez, K.5    Forestier, N.6
  • 77
    • 84902250006 scopus 로고    scopus 로고
    • Community structure and PAH ring-hydroxylating dioxygenase genes of a marine pyrene-degrading microbial consortium
    • Gallego, S., Vila, J., Tauler, M., Nieto, J. M., Breugelmans, P., Springael, D., et al. (2014). Community structure and PAH ring-hydroxylating dioxygenase genes of a marine pyrene-degrading microbial consortium. Biodegradation 25, 543-556. doi: 10.1007/s10532-013-9680-z
    • (2014) Biodegradation , vol.25 , pp. 543-556
    • Gallego, S.1    Vila, J.2    Tauler, M.3    Nieto, J.M.4    Breugelmans, P.5    Springael, D.6
  • 78
    • 24944526639 scopus 로고    scopus 로고
    • Exploring the microbial biodegradation and biotransformation gene pool
    • Galvao, T. C., Mohn, W. W., and de Lorenzo, V. (2005). Exploring the microbial biodegradation and biotransformation gene pool. Trends Biotechnol. 23, 497-506. doi: 10.1016/j.tibtech.2005.08.002
    • (2005) Trends Biotechnol , vol.23 , pp. 497-506
    • Galvao, T.C.1    Mohn, W.W.2    de Lorenzo, V.3
  • 79
    • 71049133607 scopus 로고    scopus 로고
    • Remediation of soils contaminated with polycyclic aromatic hydrocarbons (PAHs)
    • Gan, S., Lau, E. V., and Ng, H. K. (2009). Remediation of soils contaminated with polycyclic aromatic hydrocarbons (PAHs). J. Hazard. Mater. 172, 532-549. doi: 10.1016/j.jhazmat.2009.07.118
    • (2009) J. Hazard. Mater , vol.172 , pp. 532-549
    • Gan, S.1    Lau, E.V.2    Ng, H.K.3
  • 80
    • 70349425652 scopus 로고    scopus 로고
    • Influence of compost amendment on microbial community and ecotoxicity of hydrocarbon-contaminated soils
    • Gandolfi, I., Sicolo, M., Franzetti, A., Fontanarosa, E., Santagostino, A., and Bestetti, G. (2010). Influence of compost amendment on microbial community and ecotoxicity of hydrocarbon-contaminated soils. Bioresour. Technol. 101, 568-575. doi: 10.1016/j.biortech.2009.08.095
    • (2010) Bioresour. Technol , vol.101 , pp. 568-575
    • Gandolfi, I.1    Sicolo, M.2    Franzetti, A.3    Fontanarosa, E.4    Santagostino, A.5    Bestetti, G.6
  • 81
    • 23744470829 scopus 로고    scopus 로고
    • Catabolic versatility of aromatic compound-degrading halophilic bacteria
    • Garcia, M. T., Ventosa, A., and Mellado, E. (2005). Catabolic versatility of aromatic compound-degrading halophilic bacteria. FEMS Microbiol. Ecol. 54, 97-109. doi: 10.1016/j.femsec.2005.03.009
    • (2005) FEMS Microbiol. Ecol , vol.54 , pp. 97-109
    • Garcia, M.T.1    Ventosa, A.2    Mellado, E.3
  • 82
    • 84958739417 scopus 로고    scopus 로고
    • Biodegradation of benzo(a)pyrene by two freshwater microalgae Selenastrum capricornutum and Scenedesmus acutus: a comparative study useful for bioremediation
    • Garcia de Llasera, M. P., Olmos-Espejel Jde, J., Diaz-Flores, G., and Montano-Montiel, A. (2016). Biodegradation of benzo(a)pyrene by two freshwater microalgae Selenastrum capricornutum and Scenedesmus acutus: a comparative study useful for bioremediation. Environ. Sci. Pollut. Res. Int. 23, 3365-3375. doi: 10.1007/s11356-015-5576-2
    • (2016) Environ. Sci. Pollut. Res. Int , vol.23 , pp. 3365-3375
    • Garcia de Llasera, M.P.1    Olmos-Espejel Jde, J.2    Diaz-Flores, G.3    Montano-Montiel, A.4
  • 83
    • 0026688315 scopus 로고
    • Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium
    • Gauthier, M. J., Lafay, B., Christen, R., Fernandez, L., Acquaviva, M., Bonin, P., et al. (1992). Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium. Int. J. Syst. Bacteriol. 42, 568-576. doi: 10.1099/00207713-42-4-568
    • (1992) Int. J. Syst. Bacteriol , vol.42 , pp. 568-576
    • Gauthier, M.J.1    Lafay, B.2    Christen, R.3    Fernandez, L.4    Acquaviva, M.5    Bonin, P.6
  • 84
    • 84899676830 scopus 로고    scopus 로고
    • Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oils pill simulation
    • Genovese, M., Crisafi, F., Denaro, R., Cappello, S., Russo, D., and Calogero, R. (2014). Effective bioremediation strategy for rapid in situ cleanup of anoxic marine sediments in mesocosm oils pill simulation. Front. Microbiol. 5:162. doi: 10.3389/fmicb.2014.00162
    • (2014) Front. Microbiol , vol.5 , pp. 162
    • Genovese, M.1    Crisafi, F.2    Denaro, R.3    Cappello, S.4    Russo, D.5    Calogero, R.6
  • 85
    • 19544363079 scopus 로고    scopus 로고
    • Influence of crude oil on changes of bacterial communities in Arctic sea-ice
    • Gerdes, B., Brinkmeyer, R., Dieckmann, G., and Helmke, E. (2005). Influence of crude oil on changes of bacterial communities in Arctic sea-ice. FEMS Microbiol. Ecol. 53, 129-139. doi: 10.1016/j.femsec.2004.11.010
    • (2005) FEMS Microbiol. Ecol , vol.53 , pp. 129-139
    • Gerdes, B.1    Brinkmeyer, R.2    Dieckmann, G.3    Helmke, E.4
  • 86
    • 78649512332 scopus 로고    scopus 로고
    • Degradation of phenanthrene via meta-cleavage of 2-hydroxy-1-naphthoic acid by Ochrobactrum sp. strain PWTJD
    • Ghosal, D., Chakraborty, J., Khara, P., and Dutta, T. K. (2010). Degradation of phenanthrene via meta-cleavage of 2-hydroxy-1-naphthoic acid by Ochrobactrum sp. strain PWTJD. FEMS Microbiol. Lett. 313, 103-110. doi: 10.1111/j.1574-6968.2010.02129.x
    • (2010) FEMS Microbiol. Lett , vol.313 , pp. 103-110
    • Ghosal, D.1    Chakraborty, J.2    Khara, P.3    Dutta, T.K.4
  • 87
    • 84873996431 scopus 로고    scopus 로고
    • Characterization of the metabolic pathway involved in assimilation of acenaphthene in Acinetobacter sp. strain AGAT-W
    • Ghosal, D., Dutta, A., Chakraborty, J., Basu, S., and Dutta, T. K. (2013). Characterization of the metabolic pathway involved in assimilation of acenaphthene in Acinetobacter sp. strain AGAT-W. Res. Microbiol. 164, 155-163. doi: 10.1016/j.resmic.2012.11.003
    • (2013) Res. Microbiol , vol.164 , pp. 155-163
    • Ghosal, D.1    Dutta, A.2    Chakraborty, J.3    Basu, S.4    Dutta, T.K.5
  • 88
    • 0346499634 scopus 로고    scopus 로고
    • Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community
    • Ginige, M. P., Hugenholtz, P., Daims, H., Wagner, M., Keller, J., and Blackall, L. L. (2004). Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community. Appl. Environ. Microbiol. 70, 588-596. doi: 10.1128/AEM.70.1.588-596.2004
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 588-596
    • Ginige, M.P.1    Hugenholtz, P.2    Daims, H.3    Wagner, M.4    Keller, J.5    Blackall, L.L.6
  • 89
    • 0031437067 scopus 로고    scopus 로고
    • Genetics of naphthalene and phenanthrene degradation by Comamonas testosteroni
    • Goyal, A. K., and Zylstra, G. J. (1997). Genetics of naphthalene and phenanthrene degradation by Comamonas testosteroni. J. Ind. Microbiol. Biotechnol. 19, 401-407. doi: 10.1038/sj.jim.2900476
    • (1997) J. Ind. Microbiol. Biotechnol , vol.19 , pp. 401-407
    • Goyal, A.K.1    Zylstra, G.J.2
  • 90
    • 0033978440 scopus 로고    scopus 로고
    • The differential removal of aged polycyclic aromatic hydrocarbons from soil during bioremediation
    • Guerin, T. E. (2000). The differential removal of aged polycyclic aromatic hydrocarbons from soil during bioremediation. Environ. Sci. Pollut. Res. Int. 7, 19-26. doi: 10.1065/espr199910.004
    • (2000) Environ. Sci. Pollut. Res. Int , vol.7 , pp. 19-26
    • Guerin, T.E.1
  • 91
    • 0037506334 scopus 로고    scopus 로고
    • Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria
    • Habe, H., and Omori, T. (2003). Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria. Biosci. Biotechnol. Biochem. 67, 225-243. doi: 10.1271/bbb.67.225
    • (2003) Biosci. Biotechnol. Biochem , vol.67 , pp. 225-243
    • Habe, H.1    Omori, T.2
  • 92
    • 0002553335 scopus 로고
    • Organopollutant degradation by ligninolytic fungi
    • eds L. Y. Young and K. E. Cerniglia (New York: Wiley-Liss Inc.)
    • Hammel, K. E. (1995). "Organopollutant degradation by ligninolytic fungi," in Microbial Transformation and Degradation of Toxic Organic Chemicals, eds L. Y. Young and K. E. Cerniglia (New York: Wiley-Liss Inc.), 331-346
    • (1995) Microbial Transformation and Degradation of Toxic Organic Chemicals , pp. 331-346
    • Hammel, K.E.1
  • 93
    • 0032192790 scopus 로고    scopus 로고
    • Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products
    • Handelsman, J., Rondon, M. R., Brady, S. F., Clardy, J., and Goodman, R. M. (1998). Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem. Biol. 5, R245-R249. doi: 10.1016/S1074-5521(98)90108-9
    • (1998) Chem. Biol , vol.5 , pp. R245-R249
    • Handelsman, J.1    Rondon, M.R.2    Brady, S.F.3    Clardy, J.4    Goodman, R.M.5
  • 94
    • 67649770254 scopus 로고    scopus 로고
    • Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review
    • Haritash, A. K., and Kaushik, C. P. (2009). Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review. J. Hazard. Mater. 169, 1-15. doi: 10.1016/j.jhazmat.2009.03.137
    • (2009) J. Hazard. Mater , vol.169 , pp. 1-15
    • Haritash, A.K.1    Kaushik, C.P.2
  • 95
    • 77956094278 scopus 로고    scopus 로고
    • GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
    • He, Z., Deng, Y., Van Nostrand, J. D., Tu, Q., Xu, M., Hemme, C. L., et al. (2010). GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J. 4, 1167-1179. doi: 10.1038/ismej.2010.46
    • (2010) ISME J , vol.4 , pp. 1167-1179
    • He, Z.1    Deng, Y.2    Van Nostrand, J.D.3    Tu, Q.4    Xu, M.5    Hemme, C.L.6
  • 96
    • 0035838549 scopus 로고    scopus 로고
    • Marinobacter strain NCE312 has a Pseudomonas-like naphthalene dioxygenase
    • Hedlund, B. P., Geiselbrecht, A. D., and Staley, J. T. (2001). Marinobacter strain NCE312 has a Pseudomonas-like naphthalene dioxygenase. FEMS Microbiol. Lett. 201, 47-51. doi: 10.1111/j.1574-6968.2001.tb10731.x
    • (2001) FEMS Microbiol. Lett , vol.201 , pp. 47-51
    • Hedlund, B.P.1    Geiselbrecht, A.D.2    Staley, J.T.3
  • 97
    • 39649117992 scopus 로고    scopus 로고
    • Enrichment, isolation, and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth River sediments
    • Hilyard, E. J., Jones-Meehan, J. M., Spargo, B. J., and Hill, R. T. (2008). Enrichment, isolation, and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth River sediments. Appl. Environ. Microbiol. 74, 1176-1182. doi: 10.1128/AEM.01518-07
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 1176-1182
    • Hilyard, E.J.1    Jones-Meehan, J.M.2    Spargo, B.J.3    Hill, R.T.4
  • 98
    • 0037117763 scopus 로고    scopus 로고
    • Review: lignin conversion by manganese peroxidase (MnP)
    • Hofrichter, M. (2002). Review: lignin conversion by manganese peroxidase (MnP). Enz. Microbiol. Technol. 30, 454-466. doi: 10.1016/S0141-0229(01)00528-2
    • (2002) Enz. Microbiol. Technol , vol.30 , pp. 454-466
    • Hofrichter, M.1
  • 99
    • 0032993690 scopus 로고    scopus 로고
    • Mineralization of sparsely water-soluble polycyclic aromatic hydrocarbons in a water table fluctuation zone
    • Holman, H. Y. N., Tsang, Y. W., and Holman, W. R. (1999). Mineralization of sparsely water-soluble polycyclic aromatic hydrocarbons in a water table fluctuation zone. Environ. Sci. Technol. 33, 1819-1824. doi: 10.1021/es980701k
    • (1999) Environ. Sci. Technol , vol.33 , pp. 1819-1824
    • Holman, H.Y.N.1    Tsang, Y.W.2    Holman, W.R.3
  • 100
    • 0042235757 scopus 로고    scopus 로고
    • PAH sorption mechanism and partitioning behavior in lampblack-impacted soils from former oil-gas plant sites
    • Hong, L., Ghosh, U., Mahajan, T., Zare, R. N., and Luthy, R. G. (2003). PAH sorption mechanism and partitioning behavior in lampblack-impacted soils from former oil-gas plant sites. Environ. Sci. Technol. 37, 3625-3634. doi: 10.1021/es0262683
    • (2003) Environ. Sci. Technol , vol.37 , pp. 3625-3634
    • Hong, L.1    Ghosh, U.2    Mahajan, T.3    Zare, R.N.4    Luthy, R.G.5
  • 101
    • 47249103758 scopus 로고    scopus 로고
    • Accumulation and biodegradation of phenanthrene and fluoranthene by the algae enriched from a mangrove aquatic ecosystem
    • Hong, Y. W., Yuan, D. X., Lin, Q. M., and Yang, T. L. (2008). Accumulation and biodegradation of phenanthrene and fluoranthene by the algae enriched from a mangrove aquatic ecosystem. Mar. Pollut. Bull. 56, 1400-1405. doi: 10.1016/j.marpolbul.2008.05.003
    • (2008) Mar. Pollut. Bull , vol.56 , pp. 1400-1405
    • Hong, Y.W.1    Yuan, D.X.2    Lin, Q.M.3    Yang, T.L.4
  • 102
    • 23744478636 scopus 로고    scopus 로고
    • A new biodegradation prediction model specific to petroleum hydrocarbons
    • Howard, P., Meylan, W., Aronson, D., Stiteler, W., Tunkel, J., Comber, M., et al. (2005). A new biodegradation prediction model specific to petroleum hydrocarbons. Environ. Toxicol. Chem. 24, 1847-1860. doi: 10.1897/04-453R.1
    • (2005) Environ. Toxicol. Chem , vol.24 , pp. 1847-1860
    • Howard, P.1    Meylan, W.2    Aronson, D.3    Stiteler, W.4    Tunkel, J.5    Comber, M.6
  • 103
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B. M., and Pace, N. R. (1998). Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 180, 4765-4774
    • (1998) J. Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 104
    • 0029970177 scopus 로고    scopus 로고
    • Identifying microbial diversity in the natural environment: a molecular phylogenetic approach
    • Hugenholtz, P., and Pace, N. R. (1996). Identifying microbial diversity in the natural environment: a molecular phylogenetic approach. Trends Biotechnol. 14, 190-197. doi: 10.1016/0167-7799(96)10025-1
    • (1996) Trends Biotechnol , vol.14 , pp. 190-197
    • Hugenholtz, P.1    Pace, N.R.2
  • 105
    • 0027338686 scopus 로고
    • Distribution of polycyclic aromatic hydrocarbons (PAHs) in three northern New Jersey waterways
    • Huntley, S. L., Bonnevie, N. L., Wenning, R. J., and Bedbury, H. (1993). Distribution of polycyclic aromatic hydrocarbons (PAHs) in three northern New Jersey waterways. Bull. Environ. Contam. Toxicol. 51, 865-872. doi: 10.1007/BF00198283
    • (1993) Bull. Environ. Contam. Toxicol , vol.51 , pp. 865-872
    • Huntley, S.L.1    Bonnevie, N.L.2    Wenning, R.J.3    Bedbury, H.4
  • 106
    • 0020686689 scopus 로고
    • Metabolism of aromatic hydrocarbons by the cytochrome P450 system and epoxide hydrolase
    • Jerina, D. M. (1983). Metabolism of aromatic hydrocarbons by the cytochrome P450 system and epoxide hydrolase. Drug Metab. Dispos. 11, 1-4
    • (1983) Drug Metab. Dispos , vol.11 , pp. 1-4
    • Jerina, D.M.1
  • 107
    • 0038799661 scopus 로고    scopus 로고
    • Levels and patterns of polycyclic aromatic hydrocarbons in incineration ashes
    • Johansson, I., and van Bavel, B. (2003). Levels and patterns of polycyclic aromatic hydrocarbons in incineration ashes. Sci. Total Environ. 311, 221-231. doi: 10.1016/S0048-9697(03)00168-2
    • (2003) Sci. Total Environ , vol.311 , pp. 221-231
    • Johansson, I.1    van Bavel, B.2
  • 108
    • 16644396090 scopus 로고    scopus 로고
    • Principles of microbial PAH-degradation in soil
    • Johnsen, A. R., Wick, L. Y., and Harms, H. (2005). Principles of microbial PAH-degradation in soil. Environ. Pollut. 133, 71-84. doi: 10.1016/j.envpol.2004.04.015
    • (2005) Environ. Pollut , vol.133 , pp. 71-84
    • Johnsen, A.R.1    Wick, L.Y.2    Harms, H.3
  • 109
    • 34247139729 scopus 로고    scopus 로고
    • In situ bioremediation
    • Jorgensen, K. S. (2007). In situ bioremediation. Adv. Appl. Microbiol. 61, 285-305. doi: 10.1016/S0065-2164(06)61008-3
    • (2007) Adv. Appl. Microbiol , vol.61 , pp. 285-305
    • Jorgensen, K.S.1
  • 110
    • 0033884282 scopus 로고    scopus 로고
    • Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: a review of the microbial degradation of benzo[a] pyrene
    • Juhasz, A. L., and Naidu, R. (2000). Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: a review of the microbial degradation of benzo[a] pyrene. Int. Biodeterior. Biodegradation 45, 57-88. doi: 10.1016/S0964-8305(00)00052-4
    • (2000) Int. Biodeterior. Biodegradation , vol.45 , pp. 57-88
    • Juhasz, A.L.1    Naidu, R.2
  • 111
    • 0034110781 scopus 로고    scopus 로고
    • Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria
    • Kanaly, R. A., and Harayama, S. (2000). Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria. J. Bacteriol. 182, 2059-2067. doi: 10.1128/JB.182.8.2059-2067.2000
    • (2000) J. Bacteriol , vol.182 , pp. 2059-2067
    • Kanaly, R.A.1    Harayama, S.2
  • 112
    • 77953548943 scopus 로고    scopus 로고
    • Advances in the field of high-molecular-weight polycyclic aromatic hydrocarbon biodegradation by bacteria
    • Kanaly, R. A., and Harayama, S. (2010). Advances in the field of high-molecular-weight polycyclic aromatic hydrocarbon biodegradation by bacteria. Microb. Biotechnol. 3, 136-164. doi: 10.1111/j.1751-7915.2009.00130.x
    • (2010) Microb. Biotechnol , vol.3 , pp. 136-164
    • Kanaly, R.A.1    Harayama, S.2
  • 113
    • 84905009868 scopus 로고    scopus 로고
    • The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill
    • Kappell, A. D., Wei, Y., Newton, R. J., Van Nostrand, J. D., Zhou, J., McLellan, S. L., et al. (2014). The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill. Front. Microbiol. 5:205. doi: 10.3389/fmicb.2014.00205
    • (2014) Front. Microbiol , vol.5 , pp. 205
    • Kappell, A.D.1    Wei, Y.2    Newton, R.J.3    Van Nostrand, J.D.4    Zhou, J.5    McLellan, S.L.6
  • 114
    • 84958650459 scopus 로고    scopus 로고
    • "Degradation of aromatic and polyaromatic compounds," in Biotechnology, 2nd Edn
    • eds H.-J. Rehm, G. Reed, A. Pühler, and P. Stadler (Weinheim: Wiley-VCH)
    • Kastner, M. (2000). "Degradation of aromatic and polyaromatic compounds," in Biotechnology, 2nd Edn. Environmental Processes, Vol. 11(b), eds H.-J. Rehm, G. Reed, A. Pühler, and P. Stadler (Weinheim: Wiley-VCH), 211-239
    • (2000) Environmental Processes, Vol , vol.11 , pp. 211-239
    • Kastner, M.1
  • 115
    • 0028303531 scopus 로고
    • Enumeration and characterization of the soil microflora from hydrocarbon contaminated soil sites able to mineralize polycyclic aromatic hydrocarbons (PAH)
    • Kastner, M., Jammali, B. M., and Mahro, B. (1994). Enumeration and characterization of the soil microflora from hydrocarbon contaminated soil sites able to mineralize polycyclic aromatic hydrocarbons (PAH). Appl. Microbiol. Biotechnol. 41, 267-273. doi: 10.1007/BF00186971
    • (1994) Appl. Microbiol. Biotechnol , vol.41 , pp. 267-273
    • Kastner, M.1    Jammali, B.M.2    Mahro, B.3
  • 116
    • 77953143058 scopus 로고    scopus 로고
    • Effects of metals on biosorption and biodegradation of mixed polycyclic aromatic hydrocarbons by a freshwater green alga Selenastrum capricornutum
    • Ke, L., Luo, L., Wang, P., Luan, T., and Tam, N. F. (2010). Effects of metals on biosorption and biodegradation of mixed polycyclic aromatic hydrocarbons by a freshwater green alga Selenastrum capricornutum. Bioresour. Technol. 101, 6961-6972. doi: 10.1016/j.biortech.2010.04.011
    • (2010) Bioresour. Technol , vol.101 , pp. 6961-6972
    • Ke, L.1    Luo, L.2    Wang, P.3    Luan, T.4    Tam, N.F.5
  • 117
    • 0025525994 scopus 로고
    • Identification of metabolites from degradation of naphthalene by a Mycobacterium sp
    • Kelley, I., Freeman, J. P., and Cerniglia, C. E. (1990). Identification of metabolites from degradation of naphthalene by a Mycobacterium sp. Biodegradation 1, 283-290. doi: 10.1007/BF00119765
    • (1990) Biodegradation , vol.1 , pp. 283-290
    • Kelley, I.1    Freeman, J.P.2    Cerniglia, C.E.3
  • 118
    • 51849132351 scopus 로고    scopus 로고
    • Comparative metabolomic analysis of Sinorhizobium sp. C4 during the degradation of phenanthrene
    • Keum, Y. S., Seo, J. S., Li, Q. X., and Kim, J. H. (2008). Comparative metabolomic analysis of Sinorhizobium sp. C4 during the degradation of phenanthrene. Appl. Microbiol. Biotechnol. 80, 863-872. doi: 10.1007/s00253-008-1581-4
    • (2008) Appl. Microbiol. Biotechnol , vol.80 , pp. 863-872
    • Keum, Y.S.1    Seo, J.S.2    Li, Q.X.3    Kim, J.H.4
  • 119
    • 84897039111 scopus 로고    scopus 로고
    • Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp
    • Khara, P., Roy, M., Chakraborty, J., Ghosal, D., and Dutta, T. K. (2014). Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB. FEBS Open Bio. 4, 290-300. doi: 10.1016/j.fob.2014.03.001
    • (2014) PNB. FEBS Open Bio , vol.4 , pp. 290-300
    • Khara, P.1    Roy, M.2    Chakraborty, J.3    Ghosal, D.4    Dutta, T.K.5
  • 120
    • 83055184882 scopus 로고    scopus 로고
    • Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill
    • Kostka, J. E., Prakash, O., Overholt, W. A., Green, S. J., Freyer, G., Canion, A., et al. (2011). Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted by the deepwater horizon oil spill. Appl. Environ. Microbiol. 77, 7962-7974. doi: 10.1128/AEM.05402-11
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 7962-7974
    • Kostka, J.E.1    Prakash, O.2    Overholt, W.A.3    Green, S.J.4    Freyer, G.5    Canion, A.6
  • 121
    • 84908002064 scopus 로고    scopus 로고
    • The metabolic pathways and environmental controls of hydrocarbon biodegradation in marine ecosystems
    • Kostka, J. E., Teske, A. P., Joye, S. B., and Head, I. M. (2014). The metabolic pathways and environmental controls of hydrocarbon biodegradation in marine ecosystems. Front. Microbiol. 5:471. doi: 10.3389/fmicb.2014.00471
    • (2014) Front. Microbiol , vol.5 , pp. 471
    • Kostka, J.E.1    Teske, A.P.2    Joye, S.B.3    Head, I.M.4
  • 122
    • 17444397489 scopus 로고    scopus 로고
    • Web-type evolution of rhodococcus gene clusters associated with utilization of naphthalene
    • Kulakov, L. A., Chen, S., Allen, C. C., and Larkin, M. J. (2005). Web-type evolution of rhodococcus gene clusters associated with utilization of naphthalene. Appl. Environ. Microbiol. 71, 1754-1764. doi: 10.1128/AEM.71.4.1754-1764.2005
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1754-1764
    • Kulakov, L.A.1    Chen, S.2    Allen, C.C.3    Larkin, M.J.4
  • 123
    • 79952141107 scopus 로고    scopus 로고
    • Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1
    • Kweon, O., Kim, S. J., Freeman, J. P., Song, J., Baek, S., and Cerniglia, C. E. (2010). Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1. MBio 1:e00135-10. doi: 10.1128/mBio.00135-10
    • (2010) MBio , vol.1
    • Kweon, O.1    Kim, S.J.2    Freeman, J.P.3    Song, J.4    Baek, S.5    Cerniglia, C.E.6
  • 124
    • 84899689307 scopus 로고    scopus 로고
    • Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities
    • Lamendella, R., Strutt, S., Borglin, S., Chakraborty, R., Tas, N., Mason, O. U., et al. (2014). Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities. Front. Microbiol. 5:130. doi: 10.3389/fmicb.2014.00130
    • (2014) Front. Microbiol , vol.5 , pp. 130
    • Lamendella, R.1    Strutt, S.2    Borglin, S.3    Chakraborty, R.4    Tas, N.5    Mason, O.U.6
  • 125
    • 20444371027 scopus 로고    scopus 로고
    • Biodegradation and Rhodococcus-masters of catabolic versatility
    • Larkin, M. J., Kulakov, L. A., and Allen, C. C. (2005). Biodegradation and Rhodococcus-masters of catabolic versatility. Curr. Opin. Biotechnol. 16, 282-290. doi: 10.1016/j.copbio.2005.04.007
    • (2005) Curr. Opin. Biotechnol , vol.16 , pp. 282-290
    • Larkin, M.J.1    Kulakov, L.A.2    Allen, C.C.3
  • 126
    • 49449112290 scopus 로고    scopus 로고
    • Biodegradation of organic pollutants by halophilic bacteria and archaea
    • Le Borgne, S., Paniagua, D., and Vazquez-Duhalt, R. (2008). Biodegradation of organic pollutants by halophilic bacteria and archaea. J. Mol. Microbiol. Biotechnol. 15, 74-92. doi: 10.1159/000121323
    • (2008) J. Mol. Microbiol. Biotechnol , vol.15 , pp. 74-92
    • Le Borgne, S.1    Paniagua, D.2    Vazquez-Duhalt, R.3
  • 127
    • 33748314522 scopus 로고    scopus 로고
    • Removal of fluoranthene and pyrene by different microalgal species
    • Lei, A. P., Hu, Z. L., Wong, Y. S., and Tam, N. F. (2007). Removal of fluoranthene and pyrene by different microalgal species. Bioresour. Technol. 98, 273-280. doi: 10.1016/j.biortech.2006.01.012
    • (2007) Bioresour. Technol , vol.98 , pp. 273-280
    • Lei, A.P.1    Hu, Z.L.2    Wong, Y.S.3    Tam, N.F.4
  • 128
    • 0036946928 scopus 로고    scopus 로고
    • Removal of pyrene by different microalgal species
    • Lei, A. P., Wong, Y. S., and Tam, N. F. (2002). Removal of pyrene by different microalgal species. Water Sci. Technol. 46, 195-201
    • (2002) Water Sci. Technol , vol.46 , pp. 195-201
    • Lei, A.P.1    Wong, Y.S.2    Tam, N.F.3
  • 129
    • 77953095863 scopus 로고    scopus 로고
    • Degradation of polycyclic aromatic hydrocarbons by crude extracts from spent mushroom substrate and its possible mechanisms
    • Li, X., Lin, X., Zhang, J., Wu, Y., Yin, R., Feng, Y., et al. (2010). Degradation of polycyclic aromatic hydrocarbons by crude extracts from spent mushroom substrate and its possible mechanisms. Curr. Microbiol. 60, 336-342. doi: 10.1007/s00284-009-9546-0
    • (2010) Curr. Microbiol , vol.60 , pp. 336-342
    • Li, X.1    Lin, X.2    Zhang, J.3    Wu, Y.4    Yin, R.5    Feng, Y.6
  • 130
    • 0036333875 scopus 로고    scopus 로고
    • A decade of differential display
    • Liang, P. (2002). A decade of differential display. Biotechniques 33 338-344, 346
    • (2002) Biotechniques , vol.33
    • Liang, P.1
  • 132
    • 0033568998 scopus 로고    scopus 로고
    • The contribution of traffic to atmospheric concentrations of polycyclic aromatic hydrocarbons
    • Lim, L. H., Harrison, R. M., and Harrad, S. (1999). The contribution of traffic to atmospheric concentrations of polycyclic aromatic hydrocarbons. Environ. Sci. Technol. 33, 3538-3542. doi: 10.1021/es990392d
    • (1999) Environ. Sci. Technol , vol.33 , pp. 3538-3542
    • Lim, L.H.1    Harrison, R.M.2    Harrad, S.3
  • 133
    • 0035968123 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbon (PAH) emissions from a coal-fired pilot FBC system
    • Liu, K., Han, W., Pan, W. P., and Riley, J. T. (2001). Polycyclic aromatic hydrocarbon (PAH) emissions from a coal-fired pilot FBC system. J. Hazard. Mater. 84, 175-188. doi: 10.1016/S0304-3894(01)00196-0
    • (2001) J. Hazard. Mater , vol.84 , pp. 175-188
    • Liu, K.1    Han, W.2    Pan, W.P.3    Riley, J.T.4
  • 134
    • 69049083466 scopus 로고    scopus 로고
    • Partition behavior of polycyclic aromatic hydrocarbons between aged coal tar and water
    • Liu, L., Endo, S., Eberhardt, C., Grathwohl, P., and Schmidt, T. C. (2009). Partition behavior of polycyclic aromatic hydrocarbons between aged coal tar and water. Environ. Toxicol. Chem 28, 1578-1584. doi: 10.1897/08-276.1
    • (2009) Environ. Toxicol. Chem , vol.28 , pp. 1578-1584
    • Liu, L.1    Endo, S.2    Eberhardt, C.3    Grathwohl, P.4    Schmidt, T.C.5
  • 135
    • 67349168454 scopus 로고    scopus 로고
    • Bioremediation of poly-aromatic hyrdocarbon (PAH)-contaminated soil by composting
    • Loick, N., Hobbs, P. J., Hale, M. C. D., and Jones, D. L. (2012). Bioremediation of poly-aromatic hyrdocarbon (PAH)-contaminated soil by composting. Crit. Rev. Environ. Sci. Technol. 39, 271-332. doi: 10.1080/10643380701413682
    • (2012) Crit. Rev. Environ. Sci. Technol , vol.39 , pp. 271-332
    • Loick, N.1    Hobbs, P.J.2    Hale, M.C.D.3    Jones, D.L.4
  • 136
    • 38349106816 scopus 로고    scopus 로고
    • Simultaneous biodegradation of creosote-polycyclic aromatic hydrocarbons by a pyrene-degrading Mycobacterium
    • Lopez, Z., Vila, J., Ortega-Calvo, J. J., and Grifoll, M. (2008). Simultaneous biodegradation of creosote-polycyclic aromatic hydrocarbons by a pyrene-degrading Mycobacterium. Appl. Microbiol. Biotechnol. 78, 165-172. doi: 10.1007/s00253-007-1284-2
    • (2008) Appl. Microbiol. Biotechnol , vol.78 , pp. 165-172
    • Lopez, Z.1    Vila, J.2    Ortega-Calvo, J.J.3    Grifoll, M.4
  • 137
    • 0035943380 scopus 로고    scopus 로고
    • Bioremediation. Anaerobes to the rescue
    • Lovley, D. R. (2001). Bioremediation. Anaerobes to the rescue. Science 293, 1444-1446. doi: 10.1126/science.1063294
    • (2001) Science , vol.293 , pp. 1444-1446
    • Lovley, D.R.1
  • 138
    • 79952575710 scopus 로고    scopus 로고
    • Bacteria-mediated PAH degradation in soil and sediment
    • Lu, X. Y., Zhang, T., and Fang, H. H. (2011). Bacteria-mediated PAH degradation in soil and sediment. Appl. Microbiol. Biotechnol. 89, 1357-1371. doi: 10.1007/s00253-010-3072-7
    • (2011) Appl. Microbiol. Biotechnol , vol.89 , pp. 1357-1371
    • Lu, X.Y.1    Zhang, T.2    Fang, H.H.3
  • 140
    • 0141559375 scopus 로고    scopus 로고
    • Degradation and formation of polycyclic aromatic compounds during bioslurry treatment of an aged gasworks soil
    • Lundstedt, S., Haglund, P., and Oberg, L. (2003). Degradation and formation of polycyclic aromatic compounds during bioslurry treatment of an aged gasworks soil. Environ. Toxicol. Chem. 22, 1413-1420. doi: 10.1002/etc.5620220701
    • (2003) Environ. Toxicol. Chem , vol.22 , pp. 1413-1420
    • Lundstedt, S.1    Haglund, P.2    Oberg, L.3
  • 141
    • 84864100469 scopus 로고    scopus 로고
    • Relationships between aging of PAHs and soil properties
    • Luo, L., Lin, S., Huan, H., and Zhang, S. (2012). Relationships between aging of PAHs and soil properties. Environ. Pollut. 170, 177-182. doi: 10.1016/j.envpol.2012.07.003
    • (2012) Environ. Pollut , vol.170 , pp. 177-182
    • Luo, L.1    Lin, S.2    Huan, H.3    Zhang, S.4
  • 142
    • 84908700560 scopus 로고    scopus 로고
    • Removal and transformation of high molecular weight polycyclic aromatic hydrocarbons in water by live and dead microalgae
    • Luo, L., Wang, P., Lin, L., Luan, T., Ke, L., and Tam, N. F. Y. (2014). Removal and transformation of high molecular weight polycyclic aromatic hydrocarbons in water by live and dead microalgae. Process Biochem. 49, 1723-1732. doi: 10.1016/j.procbio.2014.06.026
    • (2014) Process Biochem , vol.49 , pp. 1723-1732
    • Luo, L.1    Wang, P.2    Lin, L.3    Luan, T.4    Ke, L.5    Tam, N.F.Y.6
  • 143
    • 84918521422 scopus 로고    scopus 로고
    • Pyrene degradation accelerated by constructed consortium of bacterium and microalga: effects of degradation products on the microalgal growth
    • Luo, S., Chen, B., Lin, L., Wang, X., Tam, N. F., and Luan, T. (2014). Pyrene degradation accelerated by constructed consortium of bacterium and microalga: effects of degradation products on the microalgal growth. Environ. Sci. Technol. 48, 13917-13924. doi: 10.1021/es503761j
    • (2014) Environ. Sci. Technol , vol.48 , pp. 13917-13924
    • Luo, S.1    Chen, B.2    Lin, L.3    Wang, X.4    Tam, N.F.5    Luan, T.6
  • 145
    • 0027787546 scopus 로고
    • Interfacial films in coal tar nonaqueous-phase liquid-water systems
    • Luthy, R. G., Ramaswami, A., and Ghosal, S. (1993). Interfacial films in coal tar nonaqueous-phase liquid-water systems. Environ. Sci. Technol. 27, 2914-2918. doi: 10.1021/es00049a035
    • (1993) Environ. Sci. Technol , vol.27 , pp. 2914-2918
    • Luthy, R.G.1    Ramaswami, A.2    Ghosal, S.3
  • 146
    • 84896739948 scopus 로고    scopus 로고
    • Single cell genomics: advances and future perspectives
    • Macaulay, I. C., and Voet, T. (2014). Single cell genomics: advances and future perspectives. PLoS Genet. 10:e1004126. doi: 10.1371/journal.pgen.1004126
    • (2014) PLoS Genet , vol.10
    • Macaulay, I.C.1    Voet, T.2
  • 147
    • 0004695616 scopus 로고    scopus 로고
    • "Partitioning and physical chemical properties of PAHs,"
    • ed. A. H. Neilson (Berlin: Springer-Verlag)
    • Mackay, D., and Callcott, D. (1998). "Partitioning and physical chemical properties of PAHs," in The Handbook of Environmental Chemistry, ed. A. H. Neilson (Berlin: Springer-Verlag), 325-346
    • (1998) The Handbook of Environmental Chemistry , pp. 325-346
    • Mackay, D.1    Callcott, D.2
  • 148
    • 0017546416 scopus 로고
    • Aqueous solubility of polynuclear aromatic hydrocarbons
    • Mackay, D., and Shiu, W. Y. (1977). Aqueous solubility of polynuclear aromatic hydrocarbons. J. Chem. Eng. 22, 399-402
    • (1977) J. Chem. Eng , vol.22 , pp. 399-402
    • Mackay, D.1    Shiu, W.Y.2
  • 149
    • 78651393911 scopus 로고    scopus 로고
    • Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: a review
    • Mallick, S., Chakraborty, J., and Dutta, T. K. (2011). Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: a review. Crit. Rev. Microbiol. 37, 64-90. doi: 10.3109/1040841X.2010.512268
    • (2011) Crit. Rev. Microbiol , vol.37 , pp. 64-90
    • Mallick, S.1    Chakraborty, J.2    Dutta, T.K.3
  • 150
    • 34447529272 scopus 로고    scopus 로고
    • A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus s. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2,3-dioxo-5-(2'-hydroxyphenyl)-pent-4-enoic acid
    • Mallick, S., Chatterjee, S., and Dutta, T. K. (2007). A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2,3-dioxo-5-(2'-hydroxyphenyl)-pent-4-enoic acid. Microbiology 153(Pt. 7), 2104-2115. doi: 10.1099/mic.0.2006/004218-0
    • (2007) Microbiology , vol.153 , pp. 2104-2115
    • Mallick, S.1    Chatterjee, S.2    Dutta, T.K.3
  • 151
    • 43049150072 scopus 로고    scopus 로고
    • Innovative methods for soil DNA purification tested in soils with widely differing characteristics
    • Mareckova, M. S., Cermak, L., Novotna, J., Plhackova, K., Forstova, J., and Kopecky, J. (2008). Innovative methods for soil DNA purification tested in soils with widely differing characteristics. Appl. Environ. Microbiol. 74, 2902-2907. doi: 10.1128/AEM.02161-07
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 2902-2907
    • Mareckova, M.S.1    Cermak, L.2    Novotna, J.3    Plhackova, K.4    Forstova, J.5    Kopecky, J.6
  • 152
    • 0034840415 scopus 로고    scopus 로고
    • Biodegradation and bioremediation of hydrocarbons in extreme environments
    • Margesin, R., and Schinner, F. (2001a). Biodegradation and bioremediation of hydrocarbons in extreme environments. Appl. Microbiol. Biotechnol. 56, 650-663. doi: 10.1007/s002530100701
    • (2001) Appl. Microbiol. Biotechnol , vol.56 , pp. 650-663
    • Margesin, R.1    Schinner, F.2
  • 153
    • 0035319086 scopus 로고    scopus 로고
    • Potential of halotolerant and halophilic microorganisms for biotechnology
    • Margesin, R., and Schinner, F. (2001b). Potential of halotolerant and halophilic microorganisms for biotechnology. Extremophiles 5, 73-83. doi: 10.1007/s007920100184
    • (2001) Extremophiles , vol.5 , pp. 73-83
    • Margesin, R.1    Schinner, F.2
  • 154
    • 0034936129 scopus 로고    scopus 로고
    • Effect of a complex environmental mixture from coal tar containing polycyclic aromatic hydrocarbons (PAH) on the tumor initiation, PAH-DNA binding and metabolic activation of carcinogenic PAH in mouse epidermis
    • Marston, C. P., Pereira, C., Ferguson, J., Fischer, K., Hedstrom, O., Dashwood, W. M., et al. (2001). Effect of a complex environmental mixture from coal tar containing polycyclic aromatic hydrocarbons (PAH) on the tumor initiation, PAH-DNA binding and metabolic activation of carcinogenic PAH in mouse epidermis. Carcinogenesis 22, 1077-1086. doi: 10.1093/carcin/22.7.1077
    • (2001) Carcinogenesis , vol.22 , pp. 1077-1086
    • Marston, C.P.1    Pereira, C.2    Ferguson, J.3    Fischer, K.4    Hedstrom, O.5    Dashwood, W.M.6
  • 155
    • 84905374149 scopus 로고    scopus 로고
    • Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
    • Mason, O. U., Han, J., Woyke, T., and Jansson, J. K. (2014). Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill. Front. Microbiol. 5:332. doi: 10.3389/fmicb.2014.00332
    • (2014) Front. Microbiol , vol.5 , pp. 332
    • Mason, O.U.1    Han, J.2    Woyke, T.3    Jansson, J.K.4
  • 156
    • 0030465240 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbons and cancer in man
    • Mastrangelo, G., Fadda, E., and Marzia, V. (1996). Polycyclic aromatic hydrocarbons and cancer in man. Environ. Health Perspect. 104, 1166-1170. doi: 10.1289/ehp.961041166
    • (1996) Environ. Health Perspect , vol.104 , pp. 1166-1170
    • Mastrangelo, G.1    Fadda, E.2    Marzia, V.3
  • 157
    • 0343852346 scopus 로고    scopus 로고
    • Ex-situ process for treating PAH contaminated soil with Phanerochaete chrysosporium
    • May, R., Schroder, P., and Sandermann, H. J. (1997). Ex-situ process for treating PAH contaminated soil with Phanerochaete chrysosporium. Environ. Sci. Technol. 31, 2626-2633. doi: 10.1021/es9700414
    • (1997) Environ. Sci. Technol , vol.31 , pp. 2626-2633
    • May, R.1    Schroder, P.2    Sandermann, H.J.3
  • 158
    • 79960910970 scopus 로고    scopus 로고
    • Bioremediation approaches for organic pollutants: a critical perspective
    • Megharaj, M., Ramakrishnan, B., Venkateswarlu, K., Sethunathan, N., and Naidu, R. (2011). Bioremediation approaches for organic pollutants: a critical perspective. Environ. Int. 37, 1362-1375. doi: 10.1016/j.envint.2011.06.003
    • (2011) Environ. Int , vol.37 , pp. 1362-1375
    • Megharaj, M.1    Ramakrishnan, B.2    Venkateswarlu, K.3    Sethunathan, N.4    Naidu, R.5
  • 159
    • 0030805068 scopus 로고    scopus 로고
    • Superior survival and degradation of dibenzo-p-dioxin and dibenzofuran in soil by soil-adapted Sphingomonas sp. strain RW1
    • Megharaj, M., Wittich, R. W., Blanco, E., Pieper, D. H., and Timmis, K. N. (2002). Superior survival and degradation of dibenzo-p-dioxin and dibenzofuran in soil by soil-adapted Sphingomonas sp. strain RW1. Appl. Microbiol. Biotechnol. 48, 109-114. doi: 10.1007/s002530051024
    • (2002) Appl. Microbiol. Biotechnol , vol.48 , pp. 109-114
    • Megharaj, M.1    Wittich, R.W.2    Blanco, E.3    Pieper, D.H.4    Timmis, K.N.5
  • 160
    • 5444268493 scopus 로고    scopus 로고
    • "Biotechnological potential of moderately and extremely halophilic microorganisms,"
    • ed. J. L. Barredo (Kerala: Research Signpost)
    • Mellado, E., and Ventosa, A. (2003). "Biotechnological potential of moderately and extremely halophilic microorganisms," in Microorganisms for Health Care, Food and Enzyme Production, ed. J. L. Barredo (Kerala: Research Signpost), 233-256
    • (2003) Microorganisms for Health Care, Food and Enzyme Production , pp. 233-256
    • Mellado, E.1    Ventosa, A.2
  • 161
    • 0036180498 scopus 로고    scopus 로고
    • Ecotoxicological monitoring of remediation in a coke oven soil
    • Mendonca, E., and Picado, A. (2002). Ecotoxicological monitoring of remediation in a coke oven soil. Environ. Toxicol. 17, 74-79. doi: 10.1002/tox.10034
    • (2002) Environ. Toxicol , vol.17 , pp. 74-79
    • Mendonca, E.1    Picado, A.2
  • 162
    • 0027164003 scopus 로고
    • NAH plasmid-mediated catabolism of anthracene and phenanthrene to naphthoic acids
    • Menn, F. M., Applegate, B. M., and Sayler, G. S. (1993). NAH plasmid-mediated catabolism of anthracene and phenanthrene to naphthoic acids. Appl. Environ. Microbiol. 59, 1938-1942
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 1938-1942
    • Menn, F.M.1    Applegate, B.M.2    Sayler, G.S.3
  • 163
    • 0030785665 scopus 로고    scopus 로고
    • Partially oxidized polycyclic aromatic hydrocarbons show an increased bioavailability and biodegradability
    • Meulenberg, R., Rijnaarts, H. H. M., Doddema, H. J., and Field, J. A. (1997). Partially oxidized polycyclic aromatic hydrocarbons show an increased bioavailability and biodegradability. FEMS Microbiol. Lett. 152, 45-49. doi: 10.1111/j.1574-6968.1997.tb10407.x
    • (1997) FEMS Microbiol. Lett , vol.152 , pp. 45-49
    • Meulenberg, R.1    Rijnaarts, H.H.M.2    Doddema, H.J.3    Field, J.A.4
  • 164
    • 84936419932 scopus 로고
    • Events of tumor progression associated with carcinogen treatment of epithelium and fibroblast compared with mutagenic events
    • eds G. E. Milo, B. C. Casto, and C. F. Shuler (Boca Raton, FL: CRC Press)
    • Milo, G. E., and Casto, B. C. (1992). "Events of tumor progression associated with carcinogen treatment of epithelium and fibroblast compared with mutagenic events," in Transformation of Human Epithelial Cells: Molecular and Oncogenetic Mechanisms, eds G. E. Milo, B. C. Casto, and C. F. Shuler (Boca Raton, FL: CRC Press), 261-284
    • (1992) Transformation of Human Epithelial Cells: Molecular and Oncogenetic Mechanisms , pp. 261-284
    • Milo, G.E.1    Casto, B.C.2
  • 165
    • 84897667174 scopus 로고    scopus 로고
    • DNA-based stable isotope probing coupled with cultivation methods implicates Methylophaga in hydrocarbon degradation
    • Mishamandani, S., Gutierrez, T., and Aitken, M. D. (2014). DNA-based stable isotope probing coupled with cultivation methods implicates Methylophaga in hydrocarbon degradation. Front. Microbiol. 5:76. doi: 10.3389/fmicb.2014.00076
    • (2014) Front. Microbiol , vol.5 , pp. 76
    • Mishamandani, S.1    Gutierrez, T.2    Aitken, M.D.3
  • 166
    • 68849092018 scopus 로고    scopus 로고
    • Isolation and characterization of Halomonas sp. strain C2SS100, a hydrocarbon-degrading bacterium under hypersaline conditions
    • Mnif, S., Chamkha, M., and Sayadi, S. (2009). Isolation and characterization of Halomonas sp. strain C2SS100, a hydrocarbon-degrading bacterium under hypersaline conditions. J. Appl. Microbiol. 107, 785-794. doi: 10.1111/j.1365-2672.2009.04251.x
    • (2009) J. Appl. Microbiol , vol.107 , pp. 785-794
    • Mnif, S.1    Chamkha, M.2    Sayadi, S.3
  • 167
    • 0035318658 scopus 로고    scopus 로고
    • Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1
    • Moody, J. D., Freeman, J. P., Doerge, D. R., and Cerniglia, C. E. (2001). Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1. Appl. Environ. Microbiol. 67, 1476-1483. doi: 10.1128/AEM.67.4.1476-1483.2001
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 1476-1483
    • Moody, J.D.1    Freeman, J.P.2    Doerge, D.R.3    Cerniglia, C.E.4
  • 168
    • 0347760384 scopus 로고    scopus 로고
    • Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1
    • Moody, J. D., Freeman, J. P., Fu, P. P., and Cerniglia, C. E. (2004). Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1. Appl. Environ. Microbiol. 70, 340-345. doi: 10.1128/AEM.70.1.340-345.2004
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 340-345
    • Moody, J.D.1    Freeman, J.P.2    Fu, P.P.3    Cerniglia, C.E.4
  • 169
    • 0022585626 scopus 로고
    • The sorption of PAH onto dissolved organic matter in Lake Michigan waters
    • Morehead, N. R., Eadie, B. J., Lake, B., Landrum, P. D., and Berner, D. (1986). The sorption of PAH onto dissolved organic matter in Lake Michigan waters. Chemosphere 15, 403-412. doi: 10.1016/0045-6535(86)90534-5
    • (1986) Chemosphere , vol.15 , pp. 403-412
    • Morehead, N.R.1    Eadie, B.J.2    Lake, B.3    Landrum, P.D.4    Berner, D.5
  • 170
    • 0000889734 scopus 로고    scopus 로고
    • Bioremediation of environments contaminated by polycyclic aromatic hydrocarbons
    • eds R. L. Crawford and L. D. Crawford (Cambridge: Cambridge University Press)
    • Mueller, J. G., Cerniglia, C. E., and Pritchard, P. H. (1996). "Bioremediation of environments contaminated by polycyclic aromatic hydrocarbons," in Bioremediation: Principles and Applications, eds R. L. Crawford and L. D. Crawford (Cambridge: Cambridge University Press), 125-194
    • (1996) Bioremediation: Principles and Applications , pp. 125-194
    • Mueller, J.G.1    Cerniglia, C.E.2    Pritchard, P.H.3
  • 171
    • 0024374291 scopus 로고
    • Action of a fluoranthene-utilizing bacterial community on polycyclic aromatic hydrocarbon components of creosote
    • Mueller, J. G., Chapman, P. J., and Pritchard, P. H. (1989). Action of a fluoranthene-utilizing bacterial community on polycyclic aromatic hydrocarbon components of creosote. Appl. Environ. Microbiol. 55, 3085-3090
    • (1989) Appl. Environ. Microbiol , vol.55 , pp. 3085-3090
    • Mueller, J.G.1    Chapman, P.J.2    Pritchard, P.H.3
  • 172
    • 0030983233 scopus 로고    scopus 로고
    • Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils
    • Mueller, J. G., Devereux, R., Santavy, D. L., Lantz, S. E., Willis, S. G., and Pritchard, P. H. (1997). Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils. Antonie Van Leeuwenhoek 71, 329-343. doi: 10.1023/A:1000277008064
    • (1997) Antonie Van Leeuwenhoek , vol.71 , pp. 329-343
    • Mueller, J.G.1    Devereux, R.2    Santavy, D.L.3    Lantz, S.E.4    Willis, S.G.5    Pritchard, P.H.6
  • 173
    • 0001215944 scopus 로고    scopus 로고
    • "Thermophilic degradation of environmental pollutants," in Biotechnology of Extremophiles
    • ed. G. Antranikian (Berlin: Springer)
    • Müller, R., Antranikian, G., Maloney, S., and Sharp, R. (1998). "Thermophilic degradation of environmental pollutants," in Biotechnology of Extremophiles. Advances in Biochemical Engineering/Bio-technology, Vol. 61, ed. G. Antranikian (Berlin: Springer), 155-169
    • (1998) Advances in Biochemical Engineering/Bio-technology, Vol , vol.61 , pp. 155-169
    • Müller, R.1    Antranikian, G.2    Maloney, S.3    Sharp, R.4
  • 174
    • 0038026139 scopus 로고    scopus 로고
    • Phenanthrene biodegradation by an algal-bacterial consortium in two-phase partitioning bioreactors
    • Munoz, R., Guieysse, B., and Mattiasson, B. (2003). Phenanthrene biodegradation by an algal-bacterial consortium in two-phase partitioning bioreactors. Appl. Microbiol. Biotechnol. 61, 261-267. doi: 10.1007/s00253-003-1231-9
    • (2003) Appl. Microbiol. Biotechnol , vol.61 , pp. 261-267
    • Munoz, R.1    Guieysse, B.2    Mattiasson, B.3
  • 175
    • 0026583350 scopus 로고
    • Evidence for an NIH shift in oxidation of naphthalene by the marine cyanobacterium Oscillatoria sp. strain JCM
    • Narro, M. L., Cerniglia, C. E., Van Baalen, C., and Gibson, D. T. (1992a). Evidence for an NIH shift in oxidation of naphthalene by the marine cyanobacterium Oscillatoria sp. strain JCM. Appl. Environ. Microbiol. 58, 1360-1363
    • (1992) Appl. Environ. Microbiol , vol.58 , pp. 1360-1363
    • Narro, M.L.1    Cerniglia, C.E.2    Van Baalen, C.3    Gibson, D.T.4
  • 176
    • 0026539407 scopus 로고
    • Metabolism of phenanthrene by the marine cyanobacterium Agmenellum quadruplicatum PR-6
    • Narro, M. L., Cerniglia, C. E., Van Baalen, C., and Gibson, D. T. (1992b). Metabolism of phenanthrene by the marine cyanobacterium Agmenellum quadruplicatum PR-6. Appl. Environ. Microbiol. 58, 1351-1359
    • (1992) Appl. Environ. Microbiol , vol.58 , pp. 1351-1359
    • Narro, M.L.1    Cerniglia, C.E.2    Van Baalen, C.3    Gibson, D.T.4
  • 177
    • 0003887174 scopus 로고
    • Washington, DC: National Academy of Sceinces
    • National Academy of Sceinces [NAS] (1971). Particulate Polycyclic Aromatic Matter. Washington, DC: National Academy of Sceinces
    • (1971) Particulate Polycyclic Aromatic Matter
  • 178
  • 179
    • 35348860923 scopus 로고    scopus 로고
    • Proteomics for the analysis of environmental stress responses in organisms
    • Nesatyy, V. J., and Suter, M. J. (2007). Proteomics for the analysis of environmental stress responses in organisms. Environ. Sci. Technol. 41, 6891-6900. doi: 10.1021/es070561r
    • (2007) Environ. Sci. Technol , vol.41 , pp. 6891-6900
    • Nesatyy, V.J.1    Suter, M.J.2
  • 180
    • 0036360655 scopus 로고    scopus 로고
    • Genomics for applied microbiology
    • Nierman, W. C., and Nelson, K. E. (2002). Genomics for applied microbiology. Adv. Appl. Microbiol. 51, 201-245. doi: 10.1016/S0065-2164(02)51007-8
    • (2002) Adv. Appl. Microbiol , vol.51 , pp. 201-245
    • Nierman, W.C.1    Nelson, K.E.2
  • 181
    • 2142659318 scopus 로고    scopus 로고
    • Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity
    • Nojiri, H., Shintani, M., and Omori, T. (2004). Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity. Appl. Microbiol. Biotechnol. 64, 154-174. doi: 10.1007/s00253-003-1509-y
    • (2004) Appl. Microbiol. Biotechnol , vol.64 , pp. 154-174
    • Nojiri, H.1    Shintani, M.2    Omori, T.3
  • 183
    • 0035866655 scopus 로고    scopus 로고
    • Partitioning, extractability, and formation of nonextractable PAH residues in soil. 1. Compound differences in aging and sequestration
    • Northcott, G. L., and Jones, K. C. (2001). Partitioning, extractability, and formation of nonextractable PAH residues in soil. 1. Compound differences in aging and sequestration. Environ. Sci. Technol. 35, 1103-1110. doi: 10.1021/es000071y
    • (2001) Environ. Sci. Technol , vol.35 , pp. 1103-1110
    • Northcott, G.L.1    Jones, K.C.2
  • 184
    • 84875838108 scopus 로고    scopus 로고
    • Use of functional gene arrays for elucidating in situ biodegradation
    • Nostrand, J. D., He, Z., and Zhou, J. (2012). Use of functional gene arrays for elucidating in situ biodegradation. Front. Microbiol. 3:339. doi: 10.3389/fmicb.2012.00339
    • (2012) Front. Microbiol , vol.3 , pp. 339
    • Nostrand, J.D.1    He, Z.2    Zhou, J.3
  • 185
    • 70449674231 scopus 로고    scopus 로고
    • Enhanced intrinsic bioremediation of hydrocarbons using an oxygen-releasing compound
    • Odencrantz, J. E., Johnson, J. G., and Koenigsberg, S. S. (1996). Enhanced intrinsic bioremediation of hydrocarbons using an oxygen-releasing compound. Autumn (Fall) 6, 99-114
    • (1996) Autumn (Fall) , vol.6 , pp. 99-114
    • Odencrantz, J.E.1    Johnson, J.G.2    Koenigsberg, S.S.3
  • 186
    • 0033567449 scopus 로고    scopus 로고
    • Distributions of three-to seven-ring polynuclear aromatic hydrocarbons on the deep sea floor in the central Pacific
    • Ohkouchi, N., Kawamura, K., and Kawahata, H. (1999). Distributions of three-to seven-ring polynuclear aromatic hydrocarbons on the deep sea floor in the central Pacific. Environ. Sci. Technol. 33, 3086-3090. doi: 10.1021/es981181w
    • (1999) Environ. Sci. Technol , vol.33 , pp. 3086-3090
    • Ohkouchi, N.1    Kawamura, K.2    Kawahata, H.3
  • 187
    • 46549085521 scopus 로고    scopus 로고
    • A high-throughput screening method based on stably transformed human cells was used to determine the immunotoxic effects of fluoranthene and other PAHs
    • Oostingh, G. J., Schmittner, M., Ehart, A. K., Tischler, U., and Duschl, A. (2008). A high-throughput screening method based on stably transformed human cells was used to determine the immunotoxic effects of fluoranthene and other PAHs. Toxicol. In Vitro 22, 1301-1310. doi: 10.1016/j.tiv.2008.03.003
    • (2008) Toxicol. In Vitro , vol.22 , pp. 1301-1310
    • Oostingh, G.J.1    Schmittner, M.2    Ehart, A.K.3    Tischler, U.4    Duschl, A.5
  • 188
    • 0001294018 scopus 로고
    • Microbial degradation of pollutants at high salt concentrations
    • Oren, A., Gurevich, P., Azachi, M., and Henis, Y. (1992). Microbial degradation of pollutants at high salt concentrations. Biodegradation 3, 387-398. doi: 10.1007/BF00129095
    • (1992) Biodegradation , vol.3 , pp. 387-398
    • Oren, A.1    Gurevich, P.2    Azachi, M.3    Henis, Y.4
  • 189
    • 0028282883 scopus 로고
    • Roles of bacterial attachment and spontaneous partitioning in the biodegradation of naphthalene initially present in nonaqueous-phase liquids
    • Ortega-Calvo, J. J., and Alexander, M. (1994). Roles of bacterial attachment and spontaneous partitioning in the biodegradation of naphthalene initially present in nonaqueous-phase liquids. Appl. Environ. Microbiol. 60, 2643-2646
    • (1994) Appl. Environ. Microbiol , vol.60 , pp. 2643-2646
    • Ortega-Calvo, J.J.1    Alexander, M.2
  • 190
    • 0002842298 scopus 로고
    • The analysis of natural microbial populations by ribosomal RNA sequences
    • Pace, N. R., Stahl, D. A., Lane, D. J., and Olsen, G. J. (1986). The analysis of natural microbial populations by ribosomal RNA sequences. Adv. Microb. Ecol. 9, 1-55. doi: 10.1007/978-1-4757-0611-6_1
    • (1986) Adv. Microb. Ecol , vol.9 , pp. 1-55
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 191
    • 0344234183 scopus 로고    scopus 로고
    • Influence of peanut oil on microbial degradation of polycyclic aromatic hydrocarbons
    • Pannu, J. K., Singh, A., and Ward, O. P. (2003). Influence of peanut oil on microbial degradation of polycyclic aromatic hydrocarbons. Can. J. Microbiol. 49, 508-513. doi: 10.1139/w03-068
    • (2003) Can. J. Microbiol , vol.49 , pp. 508-513
    • Pannu, J.K.1    Singh, A.2    Ward, O.P.3
  • 192
    • 0026833083 scopus 로고
    • Hydrogen-peroxide use to increase oxidant capacity for in situ bioremediation of contaminated soils and aquifers-a review
    • Pardieck, D. L., Bouwer, E. J., and Stone, A. T. (1992). Hydrogen-peroxide use to increase oxidant capacity for in situ bioremediation of contaminated soils and aquifers-a review. J. Contam. Hydrol. 9, 221-242. doi: 10.1016/0169-7722(92)90006-Z
    • (1992) J. Contam. Hydrol , vol.9 , pp. 221-242
    • Pardieck, D.L.1    Bouwer, E.J.2    Stone, A.T.3
  • 193
    • 33750058274 scopus 로고    scopus 로고
    • Coping with polychlorinated biphenyl (PCB) toxicity: physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress
    • Parnell, J. J., Park, J., Denef, V., Tsoi, T., Hashsham, S., Quensen, J., et al. (2006). Coping with polychlorinated biphenyl (PCB) toxicity: physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress. Appl. Environ. Microbiol. 72, 6607-6614. doi: 10.1128/AEM.01129-06
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6607-6614
    • Parnell, J.J.1    Park, J.2    Denef, V.3    Tsoi, T.4    Hashsham, S.5    Quensen, J.6
  • 194
    • 84953839640 scopus 로고    scopus 로고
    • Biodegradation capability and enzymatic variation of potentially hazardous polycyclic aromatic hydrocarbons-anthracene and pyrene by Anabaena fertilissima
    • Patel, J. G., Nirmal Kumar, J. I., Kumar, R. N., and Khan, S. R. (2016). Biodegradation capability and enzymatic variation of potentially hazardous polycyclic aromatic hydrocarbons-anthracene and pyrene by Anabaena fertilissima. Polycycl. Aromat. Compd. 36, 72-87. doi: 10.1080/10406638.2015.1039656
    • (2016) Polycycl. Aromat. Compd , vol.36 , pp. 72-87
    • Patel, J.G.1    Nirmal Kumar, J.I.2    Kumar, R.N.3    Khan, S.R.4
  • 195
    • 53749102061 scopus 로고    scopus 로고
    • Microbial biodegradation of polyaromatic hydrocarbons
    • Peng, R. H., Xiong, A. S., Xue, Y., Fu, X. Y., Gao, F., Zhao, W., et al. (2008). Microbial biodegradation of polyaromatic hydrocarbons. FEMS Microbiol. Rev. 32, 927-955. doi: 10.1111/j.1574-6976.2008.00127.x
    • (2008) FEMS Microbiol. Rev , vol.32 , pp. 927-955
    • Peng, R.H.1    Xiong, A.S.2    Xue, Y.3    Fu, X.Y.4    Gao, F.5    Zhao, W.6
  • 196
    • 33645190721 scopus 로고    scopus 로고
    • "Biotransformation of toxic organic and inorganic contaminants by halophilic bacteria,"
    • ed. A. Ventosa (Berlin: Springer)
    • Peyton, B. M., Mormille, M. R., Alva, V., Oie, C., Roberto, F., Apel, W. A., et al. (2004). "Biotransformation of toxic organic and inorganic contaminants by halophilic bacteria," in Halophilic Microorganisms, ed. A. Ventosa (Berlin: Springer), 315-331
    • (2004) Halophilic Microorganisms , pp. 315-331
    • Peyton, B.M.1    Mormille, M.R.2    Alva, V.3    Oie, C.4    Roberto, F.5    Apel, W.A.6
  • 197
    • 0029949354 scopus 로고    scopus 로고
    • Formation of sulfate and glucoside conjugates of benzo[e]pyrene by Cunninghamella elegans
    • Pothuluri, J. V., Evans, F. E., Heinze, T. M., and Cerniglia, C. E. (1996). Formation of sulfate and glucoside conjugates of benzo[e]pyrene by Cunninghamella elegans. Appl. Microbiol. Biotechnol. 45, 677-683. doi: 10.1007/s002530050747
    • (1996) Appl. Microbiol. Biotechnol , vol.45 , pp. 677-683
    • Pothuluri, J.V.1    Evans, F.E.2    Heinze, T.M.3    Cerniglia, C.E.4
  • 198
    • 84954094990 scopus 로고    scopus 로고
    • Impact of bacterial activity on turnover of insoluble hydrophobic substrates (phenanthrene and pyrene)-Model simulations for prediction of bioremediation success
    • Rein, A., Adam, I. K., Miltner, A., Brumme, K., Kastner, M., and Trapp, S. (2016). Impact of bacterial activity on turnover of insoluble hydrophobic substrates (phenanthrene and pyrene)-Model simulations for prediction of bioremediation success. J. Hazard. Mater. 306, 105-114. doi: 10.1016/j.jhazmat.2015.12.005
    • (2016) J. Hazard. Mater , vol.306 , pp. 105-114
    • Rein, A.1    Adam, I.K.2    Miltner, A.3    Brumme, K.4    Kastner, M.5    Trapp, S.6
  • 199
    • 84897938434 scopus 로고    scopus 로고
    • Toward quantitative understanding on microbial community structure and functioning: a modeling-centered approach using degradation of marine oil spills as example
    • Roling, W. F., and Bodegom, P. M. (2014). Toward quantitative understanding on microbial community structure and functioning: a modeling-centered approach using degradation of marine oil spills as example. Front Microbiol. 5:125. doi: 10.3389/fmicb.2014.00125
    • (2014) Front Microbiol , vol.5 , pp. 125
    • Roling, W.F.1    Bodegom, P.M.2
  • 200
    • 0033027259 scopus 로고    scopus 로고
    • Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
    • Romine, M. F., Stillwell, L. C., Wong, K. K., Thurston, S. J., Sisk, E. C., Sensen, C., et al. (1999). Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199. J. Bacteriol. 181, 1585-1602
    • (1999) J. Bacteriol , vol.181 , pp. 1585-1602
    • Romine, M.F.1    Stillwell, L.C.2    Wong, K.K.3    Thurston, S.J.4    Sisk, E.C.5    Sensen, C.6
  • 201
    • 84901648662 scopus 로고    scopus 로고
    • Catabolic versatility of Sphingobium sp. strain PNB capable of degrading structurally diverse aromatic compounds
    • Roy, M., Khara, P., Basu, S., and Dutta, T. K. (2013). Catabolic versatility of Sphingobium sp. strain PNB capable of degrading structurally diverse aromatic compounds. J. Bioremediat. Biodegrad. 4, 1-6. doi: 10.4172/2155-6199.1000173
    • (2013) J. Bioremediat. Biodegrad , vol.4 , pp. 1-6
    • Roy, M.1    Khara, P.2    Basu, S.3    Dutta, T.K.4
  • 203
    • 21644472236 scopus 로고    scopus 로고
    • Biodegradation of phenanthrene by the green alga Scenedesmus obliquus ES-55
    • Safonova, E., Kvitko, K., Kuschk, P., Möder, M., and Reisser, W. (2005). Biodegradation of phenanthrene by the green alga Scenedesmus obliquus ES-55. Eng. Life Sci. 5, 234-239. doi: 10.1002/elsc.200520077
    • (2005) Eng. Life Sci , vol.5 , pp. 234-239
    • Safonova, E.1    Kvitko, K.2    Kuschk, P.3    Möder, M.4    Reisser, W.5
  • 204
    • 0036605098 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation
    • Samanta, S. K., Singh, O. V., and Jain, R. K. (2002). Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation. Trends Biotechnol. 20, 243-248. doi: 10.1016/S0167-7799(02)01943-1
    • (2002) Trends Biotechnol , vol.20 , pp. 243-248
    • Samanta, S.K.1    Singh, O.V.2    Jain, R.K.3
  • 205
    • 41449100108 scopus 로고    scopus 로고
    • Processed meat and colorectal cancer: a review of epidemiologic and experimental evidence
    • Santarelli, R. L., Pierre, F., and Corpet, D. E. (2008). Processed meat and colorectal cancer: a review of epidemiologic and experimental evidence. Nutr. Cancer 60, 131-144. doi: 10.1080/01635580701684872
    • (2008) Nutr. Cancer , vol.60 , pp. 131-144
    • Santarelli, R.L.1    Pierre, F.2    Corpet, D.E.3
  • 206
    • 0345701498 scopus 로고    scopus 로고
    • Compost-mediated removal of polycyclic aromatic hydrocarbons from contaminated soil
    • Sasek, V., Bhatt, M., Cajthaml, T., Malachova, K., and Lednicka, D. (2003). Compost-mediated removal of polycyclic aromatic hydrocarbons from contaminated soil. Arch. Environ. Contam. Toxicol. 44, 336-342. doi: 10.1007/s00244-002-2037-y
    • (2003) Arch. Environ. Contam. Toxicol , vol.44 , pp. 336-342
    • Sasek, V.1    Bhatt, M.2    Cajthaml, T.3    Malachova, K.4    Lednicka, D.5
  • 208
    • 0031941097 scopus 로고    scopus 로고
    • The application of molecular techniques in environmental biotechnology for monitoring microbial systems
    • Schneegurt, M. A., and Kulpa, C. F. J. (1998). The application of molecular techniques in environmental biotechnology for monitoring microbial systems. Biotechnol. Appl. Biochem. 27, 73-79. doi: 10.1111/j.1470-8744.1998.tb01377.x
    • (1998) Biotechnol. Appl. Biochem , vol.27 , pp. 73-79
    • Schneegurt, M.A.1    Kulpa, C.F.J.2
  • 209
    • 0027250588 scopus 로고
    • Time-varying conjugation of 7,12-dimethylbenz[a]anthracene metabolites in rainbow trout (Oncorhynchus mykiss)
    • Schnitz, A. R., Squibb, K. S., and O'Connor, J. M. (1993). Time-varying conjugation of 7,12-dimethylbenz[a]anthracene metabolites in rainbow trout (Oncorhynchus mykiss). Toxicol. Appl. Pharmacol. 121, 58-70. doi: 10.1006/taap.1993.1129
    • (1993) Toxicol. Appl. Pharmacol , vol.121 , pp. 58-70
    • Schnitz, A.R.1    Squibb, K.S.2    O'Connor, J.M.3
  • 210
    • 0021210237 scopus 로고
    • Bacterial oxidation of the polycyclic aromatic hydrocarbons acenaphthene and acenaphthylene
    • Schocken, M. J., and Gibson, D. T. (1984). Bacterial oxidation of the polycyclic aromatic hydrocarbons acenaphthene and acenaphthylene. Appl. Environ. Microbiol. 48, 10-16
    • (1984) Appl. Environ. Microbiol , vol.48 , pp. 10-16
    • Schocken, M.J.1    Gibson, D.T.2
  • 211
    • 0042426318 scopus 로고    scopus 로고
    • Degradation of fluorene, anthracene, phenanthrene, fluoranthene, and pyrene lacks connection to the production of extracellular enzymes by Pleurotus ostreatus and Bjerkandera adusta
    • Schützendübel, A., Majcherczyk, A., Johannes, C., and Hüttermann, A. (1999). Degradation of fluorene, anthracene, phenanthrene, fluoranthene, and pyrene lacks connection to the production of extracellular enzymes by Pleurotus ostreatus and Bjerkandera adusta. Int. Biodeterior. Biodegradation 43, 93-100. doi: 10.1016/S0964-8305(99)00035-9
    • (1999) Int. Biodeterior. Biodegradation , vol.43 , pp. 93-100
    • Schützendübel, A.1    Majcherczyk, A.2    Johannes, C.3    Hüttermann, A.4
  • 212
    • 84897931225 scopus 로고    scopus 로고
    • The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments
    • Scott, N. M., Hess, M., Bouskill, N. J., Mason, O. U., Jansson, J. K., and Gilbert, J. A. (2014). The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments. Front. Microbiol. 5:108. doi: 10.3389/fmicb.2014.00108
    • (2014) Front. Microbiol , vol.5 , pp. 108
    • Scott, N.M.1    Hess, M.2    Bouskill, N.J.3    Mason, O.U.4    Jansson, J.K.5    Gilbert, J.A.6
  • 213
    • 0344663969 scopus 로고    scopus 로고
    • Bioavailability of hydrophobic organic contaminants in soils: fundamental concepts and techniques for analysis
    • Semple, K. T., Morriss, A. W. J., and Paton, G. I. (2003). Bioavailability of hydrophobic organic contaminants in soils: fundamental concepts and techniques for analysis. Eur. J. Soil Sci. 54, 809-818. doi: 10.1046/j.1351-0754.2003.0564.x
    • (2003) Eur. J. Soil Sci , vol.54 , pp. 809-818
    • Semple, K.T.1    Morriss, A.W.J.2    Paton, G.I.3
  • 214
    • 0034745627 scopus 로고    scopus 로고
    • Impact of composting strategies on the treatment of soils contaminated with organic pollutants
    • Semple, K. T., Reid, B. J., and Fermor, T. R. (2001). Impact of composting strategies on the treatment of soils contaminated with organic pollutants. Environ. Pollut. 112, 269-283. doi: 10.1016/S0269-7491(00)00099-3
    • (2001) Environ. Pollut , vol.112 , pp. 269-283
    • Semple, K.T.1    Reid, B.J.2    Fermor, T.R.3
  • 215
    • 61449202999 scopus 로고    scopus 로고
    • Bacterial degradation of aromatic compounds
    • Seo, J. S., Keum, Y. S., and Li, Q. X. (2009). Bacterial degradation of aromatic compounds. Int. J. Environ. Res. Public Health 6, 278-309. doi: 10.3390/ijerph6010278
    • (2009) Int. J. Environ. Res. Public Health , vol.6 , pp. 278-309
    • Seo, J.S.1    Keum, Y.S.2    Li, Q.X.3
  • 216
    • 0026595772 scopus 로고
    • Use of bioluminescence for detection of genetically engineered microorganisms released into the environment
    • Shaw, J. J., Dane, F., Geiger, D., and Kloepper, J. W. (1992). Use of bioluminescence for detection of genetically engineered microorganisms released into the environment. Appl. Environ. Microbiol. 58, 267-273
    • (1992) Appl. Environ. Microbiol , vol.58 , pp. 267-273
    • Shaw, J.J.1    Dane, F.2    Geiger, D.3    Kloepper, J.W.4
  • 217
    • 58749102200 scopus 로고    scopus 로고
    • Degradation of polycyclic aromatic hydrocarbons (2-7 rings) under microaerobic and very-low-oxygen conditions by soil fungi
    • Silva, I. S., Grossman, M., and Durrant, L. R. (2009). Degradation of polycyclic aromatic hydrocarbons (2-7 rings) under microaerobic and very-low-oxygen conditions by soil fungi. Int. Biodeterior. Biodegradation 2, 224-229. doi: 10.1016/j.ibiod.2008.09.008
    • (2009) Int. Biodeterior. Biodegradation , vol.2 , pp. 224-229
    • Silva, I.S.1    Grossman, M.2    Durrant, L.R.3
  • 218
    • 0027156189 scopus 로고
    • Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4
    • Simon, M. J., Osslund, T. D., Saunders, R., Ensley, B. D., Suggs, S., Harcourt, A., et al. (1993). Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4. Gene 127, 31-37. doi: 10.1016/0378-1119(93)90613-8
    • (1993) Gene , vol.127 , pp. 31-37
    • Simon, M.J.1    Osslund, T.D.2    Saunders, R.3    Ensley, B.D.4    Suggs, S.5    Harcourt, A.6
  • 219
    • 84899697563 scopus 로고    scopus 로고
    • Kinetic parameters for nutrient enhanced crude oil biodegradation in intertidal marine sediments
    • Singh, A. K., Sherry, A., Gray, N. D., Jones, D. M., Bowler, B. F., and Head, I. M. (2014). Kinetic parameters for nutrient enhanced crude oil biodegradation in intertidal marine sediments. Front. Microbiol. 5:160. doi: 10.3389/fmicb.2014.00160
    • (2014) Front. Microbiol , vol.5 , pp. 160
    • Singh, A.K.1    Sherry, A.2    Gray, N.D.3    Jones, D.M.4    Bowler, B.F.5    Head, I.M.6
  • 220
    • 53049108296 scopus 로고    scopus 로고
    • Bioremediation: environmental clean-up through pathway engineering
    • Singh, S., Kang, S. H., Mulchandani, A., and Chen, W. (2008). Bioremediation: environmental clean-up through pathway engineering. Curr. Opin. Biotechnol. 19, 437-444. doi: 10.1016/j.copbio.2008.07.012
    • (2008) Curr. Opin. Biotechnol , vol.19 , pp. 437-444
    • Singh, S.1    Kang, S.H.2    Mulchandani, A.3    Chen, W.4
  • 221
    • 80054006440 scopus 로고    scopus 로고
    • Pyrosequence analysis of bacterial communities in aerobic bioreactors treating polycyclic aromatic hydrocarbon-contaminated soil
    • Singleton, D. R., Richardson, S. D., and Aitken, M. D. (2011). Pyrosequence analysis of bacterial communities in aerobic bioreactors treating polycyclic aromatic hydrocarbon-contaminated soil. Biodegradation 22, 1061-1073. doi: 10.1007/s10532-011-9463-3
    • (2011) Biodegradation , vol.22 , pp. 1061-1073
    • Singleton, D.R.1    Richardson, S.D.2    Aitken, M.D.3
  • 222
    • 84892166637 scopus 로고    scopus 로고
    • Alkane hydroxylase gene (alkB) phylotype composition and diversity in northern Gulf of Mexico bacterioplankton
    • Smith, C. B., Tolar, B. B., Hollibaugh, J. T., and King, G. M. (2013). Alkane hydroxylase gene (alkB) phylotype composition and diversity in northern Gulf of Mexico bacterioplankton. Front. Microbiol. 4:370. doi: 10.3389/fmicb.2013.00370
    • (2013) Front. Microbiol , vol.4 , pp. 370
    • Smith, C.B.1    Tolar, B.B.2    Hollibaugh, J.T.3    King, G.M.4
  • 223
    • 58149142969 scopus 로고    scopus 로고
    • Molecular characteristics of xenobiotic-degrading sphingomonads
    • Stolz, A. (2009). Molecular characteristics of xenobiotic-degrading sphingomonads. Appl. Microbiol. Biotechnol. 81, 793-811. doi: 10.1007/s00253-008-1752-3
    • (2009) Appl. Microbiol. Biotechnol , vol.81 , pp. 793-811
    • Stolz, A.1
  • 224
    • 0041510301 scopus 로고    scopus 로고
    • Remediation of polyaromatic hydrocarbons (PAHs) through landfarming with biostimulation and bioaugmentation
    • Straube, W. L., Nestler, C. C., Hansen, L. D., Ringleberg, D., Pritchard, P. H., and Meehan, J. J. (2003). Remediation of polyaromatic hydrocarbons (PAHs) through landfarming with biostimulation and bioaugmentation. Acta Biotechnol. 23, 179-196. doi: 10.1002/abio.200390025
    • (2003) Acta Biotechnol , vol.23 , pp. 179-196
    • Straube, W.L.1    Nestler, C.C.2    Hansen, L.D.3    Ringleberg, D.4    Pritchard, P.H.5    Meehan, J.J.6
  • 225
    • 0028815117 scopus 로고
    • Competitive metabolism of naphthalene, methylnaphthalenes, and fluorene by phenanthrene-degrading pseudomonads
    • Stringfellow, W. T., and Aitken, M. D. (1995). Competitive metabolism of naphthalene, methylnaphthalenes, and fluorene by phenanthrene-degrading pseudomonads. Appl. Environ. Microbiol. 61, 357-362
    • (1995) Appl. Environ. Microbiol , vol.61 , pp. 357-362
    • Stringfellow, W.T.1    Aitken, M.D.2
  • 226
    • 0026532081 scopus 로고
    • Detoxification of polycyclic aromatic hydrocarbons by fungi
    • Sutherland, J. B. (1992). Detoxification of polycyclic aromatic hydrocarbons by fungi. J. Ind. Microbiol. Biotechnol. 9, 53-62
    • (1992) J. Ind. Microbiol. Biotechnol , vol.9 , pp. 53-62
    • Sutherland, J.B.1
  • 227
    • 0025144132 scopus 로고
    • Stereoselective formation of a K-region dihydrodiol from phenanthrene by Streptomyces flavovirens
    • Sutherland, J. B., Freeman, J. P., Selby, A. L., Fu, P. P., Miller, D. W., and Cerniglia, C. E. (1990). Stereoselective formation of a K-region dihydrodiol from phenanthrene by Streptomyces flavovirens. Arch. Microbiol. 154, 260-266. doi: 10.1007/BF00248965
    • (1990) Arch. Microbiol , vol.154 , pp. 260-266
    • Sutherland, J.B.1    Freeman, J.P.2    Selby, A.L.3    Fu, P.P.4    Miller, D.W.5    Cerniglia, C.E.6
  • 230
    • 84899681743 scopus 로고    scopus 로고
    • A survey of deep water horizon (DWH) oil-degrading bacteria from the eastern oyster biome and its surrounding environment
    • Thomas, J. C. I., Wafula, D., Chauhan, A., Green, S. J., Gragg, R., and Jagoe, C. (2014). A survey of deep water horizon (DWH) oil-degrading bacteria from the eastern oyster biome and its surrounding environment. Front. Microbiol. 5:149. doi: 10.3389/fmicb.2014.00149
    • (2014) Front. Microbiol , vol.5 , pp. 149
    • Thomas, J.C.I.1    Wafula, D.2    Chauhan, A.3    Green, S.J.4    Gragg, R.5    Jagoe, C.6
  • 231
    • 0032795933 scopus 로고    scopus 로고
    • Bacteria designed for bioremediation
    • Timmis, K. N., and Pieper, D. H. (1999). Bacteria designed for bioremediation. Trends Biotechnol. 17, 200-204. doi: 10.1016/S0167-7799(98)01295-5
    • (1999) Trends Biotechnol , vol.17 , pp. 200-204
    • Timmis, K.N.1    Pieper, D.H.2
  • 232
    • 0027939425 scopus 로고
    • Designing microorganisms for the treatment of toxic wastes
    • Timmis, K. N., Steffan, R. J., and Unterman, R. (1994). Designing microorganisms for the treatment of toxic wastes. Annu. Rev. Microbiol. 48, 525-557. doi: 10.1146/annurev.mi.48.100194.002521
    • (1994) Annu. Rev. Microbiol , vol.48 , pp. 525-557
    • Timmis, K.N.1    Steffan, R.J.2    Unterman, R.3
  • 233
    • 0033506585 scopus 로고    scopus 로고
    • Cometabolic oxidation of phenanthrene to phenanthrene trans-9,10-dihydrodiol by Mycobacterium strain S1 growing on anthracene in the presence of phenanthrene
    • Tongpim, S., and Pickard, M. A. (1999). Cometabolic oxidation of phenanthrene to phenanthrene trans-9,10-dihydrodiol by Mycobacterium strain S1 growing on anthracene in the presence of phenanthrene. Can. J. Microbiol. 45, 369-376. doi: 10.1139/cjm-45-5-369
    • (1999) Can. J. Microbiol , vol.45 , pp. 369-376
    • Tongpim, S.1    Pickard, M.A.2
  • 234
    • 0038820052 scopus 로고    scopus 로고
    • The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds
    • Top, E. M., and Springael, D. (2003). The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Curr. Opin. Biotechnol. 14, 262-269. doi: 10.1016/S0958-1669(03)00066-1
    • (2003) Curr. Opin. Biotechnol , vol.14 , pp. 262-269
    • Top, E.M.1    Springael, D.2
  • 235
    • 84904874872 scopus 로고    scopus 로고
    • Evaluation of the biodegradation of Alaska North Slope oil in microcosms using the biodegradation model BIOB
    • Torlapati, J., and Boufadel, M. C. (2014). Evaluation of the biodegradation of Alaska North Slope oil in microcosms using the biodegradation model BIOB. Front. Microbiol. 5:212. doi: 10.3389/fmicb.2014.00212
    • (2014) Front. Microbiol , vol.5 , pp. 212
    • Torlapati, J.1    Boufadel, M.C.2
  • 236
    • 28844480510 scopus 로고    scopus 로고
    • Fungal diversity and use in decomposition of environmental pollutants
    • Tortella, G. R., Diez, M. C., and Duran, N. (2005). Fungal diversity and use in decomposition of environmental pollutants. Crit. Rev. Microbiol. 31, 197-212. doi: 10.1080/10408410500304066
    • (2005) Crit. Rev. Microbiol , vol.31 , pp. 197-212
    • Tortella, G.R.1    Diez, M.C.2    Duran, N.3
  • 237
    • 33749020264 scopus 로고    scopus 로고
    • Synergistic effect of cell immobilization in polyurethane foam and use of thermo tolerant strain on mixed hydrocarbon substrate by Prototheca zopfii
    • Ueno, R., Ureno, N., and Wada, S. (2006). Synergistic effect of cell immobilization in polyurethane foam and use of thermo tolerant strain on mixed hydrocarbon substrate by Prototheca zopfii. Fish. Sci. 72, 1027-1033. doi: 10.1111/j.1444-2906.2006.01252.x
    • (2006) Fish. Sci , vol.72 , pp. 1027-1033
    • Ueno, R.1    Ureno, N.2    Wada, S.3
  • 238
    • 39749085145 scopus 로고    scopus 로고
    • Repeated batch cultivation of the hydrocarbon-degrading, micro-algal strain Prototheca zopfii RND16 immobilized in polyurethane foam
    • Ueno, R., Wada, S., and Urano, N. (2008). Repeated batch cultivation of the hydrocarbon-degrading, micro-algal strain Prototheca zopfii RND16 immobilized in polyurethane foam. Can. J. Microbiol. 54, 66-70. doi: 10.1139/w07-112
    • (2008) Can. J. Microbiol , vol.54 , pp. 66-70
    • Ueno, R.1    Wada, S.2    Urano, N.3
  • 239
    • 0029749180 scopus 로고    scopus 로고
    • Enrichment of polycyclic aromatic hydrocarbons in forest soils near a blast furnace plant
    • Van Brummelen, T. C., Verweij, R. A., Wedzinga, S., and Van Gestel, C. A. M. (1996). Enrichment of polycyclic aromatic hydrocarbons in forest soils near a blast furnace plant. Chemosphere 32, 293-314. doi: 10.1016/0045-6535(95)00339-8
    • (1996) Chemosphere , vol.32 , pp. 293-314
    • Van Brummelen, T.C.1    Verweij, R.A.2    Wedzinga, S.3    Van Gestel, C.A.M.4
  • 240
    • 0037389524 scopus 로고    scopus 로고
    • Elucidation of the metabolic pathway of fluorene and cometabolic pathways of phenanthrene, fluoranthene, anthracene and dibenzothiophene by Sphingomonas sp. LB126
    • van Herwijnen, R., Wattiau, P., Bastiaens, L., Daal, L., Jonker, L., Springael, D., et al. (2003). Elucidation of the metabolic pathway of fluorene and cometabolic pathways of phenanthrene, fluoranthene, anthracene and dibenzothiophene by Sphingomonas sp. LB126. Res. Microbiol. 154, 199-206. doi: 10.1016/S0923-2508(03)00039-1
    • (2003) Res. Microbiol , vol.154 , pp. 199-206
    • van Herwijnen, R.1    Wattiau, P.2    Bastiaens, L.3    Daal, L.4    Jonker, L.5    Springael, D.6
  • 241
    • 0036168860 scopus 로고    scopus 로고
    • Humic acid enhanced remediation of an emplaced diesel source in groundwater. 1. Laboratory-based pilot scale test
    • Van Stempvoort, D. R., Lesage, S., Novakowski, K. S., Millar, K., Brown, S., and Lawrence, J. R. (2002). Humic acid enhanced remediation of an emplaced diesel source in groundwater. 1. Laboratory-based pilot scale test. J. Contam. Hydrol. 54, 249-276. doi: 10.1016/S0169-7722(01)00182-6
    • (2002) J. Contam. Hydrol , vol.54 , pp. 249-276
    • Van Stempvoort, D.R.1    Lesage, S.2    Novakowski, K.S.3    Millar, K.4    Brown, S.5    Lawrence, J.R.6
  • 242
    • 33845259619 scopus 로고    scopus 로고
    • Immunotoxic effects of chemicals: a matrix for occupational and environmental epidemiological studies
    • Veraldi, A., Costantini, A. S., Bolejack, V., Miligi, L., Vineis, P., and van Loveren, H. (2006). Immunotoxic effects of chemicals: a matrix for occupational and environmental epidemiological studies. Am. J. Ind. Med. 49, 1046-1055. doi: 10.1002/ajim.20364
    • (2006) Am. J. Ind. Med , vol.49 , pp. 1046-1055
    • Veraldi, A.1    Costantini, A.S.2    Bolejack, V.3    Miligi, L.4    Vineis, P.5    van Loveren, H.6
  • 243
    • 1242300259 scopus 로고    scopus 로고
    • Degradation of benzo[a]pyrene by mitosporic fungi and extracellular oxidative enzymes
    • Verdin, A., Sahraoui, A. L. H., and Durand, R. (2004). Degradation of benzo[a]pyrene by mitosporic fungi and extracellular oxidative enzymes. Int. Biodeterior. Biodegradation 53, 65-70. doi: 10.1016/j.ibiod.2003.12.001
    • (2004) Int. Biodeterior. Biodegradation , vol.53 , pp. 65-70
    • Verdin, A.1    Sahraoui, A.L.H.2    Durand, R.3
  • 244
    • 77954405374 scopus 로고    scopus 로고
    • Microbial community structure of a heavy fuel oil-degrading marine consortium: linking microbial dynamics with polycyclic aromatic hydrocarbon utilization
    • Vila, J., María Nieto, J., Mertens, J., Springael, D., and Grifoll, M. (2010). Microbial community structure of a heavy fuel oil-degrading marine consortium: linking microbial dynamics with polycyclic aromatic hydrocarbon utilization. FEMS Microbiol. Ecol. 73, 349-362. doi: 10.1111/j.1574-6941.2010.00902.x
    • (2010) FEMS Microbiol. Ecol , vol.73 , pp. 349-362
    • Vila, J.1    María Nieto, J.2    Mertens, J.3    Springael, D.4    Grifoll, M.5
  • 245
    • 84963941026 scopus 로고    scopus 로고
    • Bacterial PAH degradation in marine and terrestrial habitats
    • Vila, J., Tauler, M., and Grifoll, M. (2015). Bacterial PAH degradation in marine and terrestrial habitats. Curr. Opin. Biotechnol. 33, 95-102. doi: 10.1016/j.copbio.2015.01.006
    • (2015) Curr. Opin. Biotechnol , vol.33 , pp. 95-102
    • Vila, J.1    Tauler, M.2    Grifoll, M.3
  • 246
    • 0026516644 scopus 로고
    • Microbial degradation of polycyclic aromatic hydrocarbons: effect of substrate availability on bacterial growth kinetics
    • Volkering, F., Breure, A. M., Sterkenburg, A., and van Andel, J. G. (1992). Microbial degradation of polycyclic aromatic hydrocarbons: effect of substrate availability on bacterial growth kinetics. Appl. Microbiol. Biotechnol. 36, 548-552. doi: 10.1007/BF00170201
    • (1992) Appl. Microbiol. Biotechnol , vol.36 , pp. 548-552
    • Volkering, F.1    Breure, A.M.2    Sterkenburg, A.3    van Andel, J.G.4
  • 247
    • 0031021190 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbon accumulation in urban, suburban, and rural vegetation
    • Wagrowski, D. M., and Hites, R. A. (1997). Polycyclic aromatic hydrocarbon accumulation in urban, suburban, and rural vegetation. Environ. Sci. Technol. 31, 279-282. doi: 10.1021/es960419i
    • (1997) Environ. Sci. Technol , vol.31 , pp. 279-282
    • Wagrowski, D.M.1    Hites, R.A.2
  • 248
    • 0029067564 scopus 로고
    • Biotransformation of benzo[a]pyrene and other polycyclic aromatic hydrocarbons and heterocyclic analogs by several green algae and other algal species under gold and white light
    • Warshawsky, D., Cody, T., Radike, M., Reilman, R., Schumann, B., LaDow, K., et al. (1995). Biotransformation of benzo[a]pyrene and other polycyclic aromatic hydrocarbons and heterocyclic analogs by several green algae and other algal species under gold and white light. Chem. Biol. Interact. 97, 131-148. doi: 10.1016/0009-2797(95)03610-X
    • (1995) Chem. Biol. Interact , vol.97 , pp. 131-148
    • Warshawsky, D.1    Cody, T.2    Radike, M.3    Reilman, R.4    Schumann, B.5    LaDow, K.6
  • 249
    • 0024299341 scopus 로고
    • Metabolism of benzo(a)pyrene by a dioxygenase enzyme system of the freshwater green alga Selenastrum capricornutum
    • Warshawsky, D., Radike, M., Jayasimhulu, K., and Cody, T. (1988). Metabolism of benzo(a)pyrene by a dioxygenase enzyme system of the freshwater green alga Selenastrum capricornutum. Biochem. Biophys. Res. Commun. 152, 540-544. doi: 10.1016/S0006-291X(88)80071-8
    • (1988) Biochem. Biophys. Res. Commun , vol.152 , pp. 540-544
    • Warshawsky, D.1    Radike, M.2    Jayasimhulu, K.3    Cody, T.4
  • 250
    • 0036419477 scopus 로고    scopus 로고
    • Understanding the diversity in catabolic potential of microorganisms for the development of bioremediation strategies
    • Watanabe, K., Futamata, H., and Harayama, S. (2002). Understanding the diversity in catabolic potential of microorganisms for the development of bioremediation strategies. Antonie Van Leeuwenhoek 81, 655-663. doi: 10.1023/A:1020534328100
    • (2002) Antonie Van Leeuwenhoek , vol.81 , pp. 655-663
    • Watanabe, K.1    Futamata, H.2    Harayama, S.3
  • 251
    • 0021007163 scopus 로고
    • Polynuclear aromatic compounds, Part 1, chemical, environmental and experimental data
    • WHO (1983). Polynuclear aromatic compounds, Part 1, chemical, environmental and experimental data. IARC Monogr. Eval. Carcinog. Risk Chem. Hum. 32, 1-453
    • (1983) IARC Monogr. Eval. Carcinog. Risk Chem. Hum , vol.32 , pp. 1-453
  • 252
    • 0036163855 scopus 로고    scopus 로고
    • Molecular detection and diversity of polycyclic aromatic hydrocarbon-degrading bacteria isolated from geographically diverse sites
    • Widada, J., Nojiri, H., Kasuga, K., Yoshida, T., Habe, H., and Omori, T. (2002). Molecular detection and diversity of polycyclic aromatic hydrocarbon-degrading bacteria isolated from geographically diverse sites. Appl. Microbiol. Biotechnol. 58, 202-209. doi: 10.1007/s00253-001-0880-9
    • (2002) Appl. Microbiol. Biotechnol , vol.58 , pp. 202-209
    • Widada, J.1    Nojiri, H.2    Kasuga, K.3    Yoshida, T.4    Habe, H.5    Omori, T.6
  • 253
    • 0032906465 scopus 로고    scopus 로고
    • In situ, real-time catabolic gene expression: extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater
    • Wilson, M. S., Bakermans, C., and Madsen, E. L. (1999). In situ, real-time catabolic gene expression: extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater. Appl. Environ. Microbiol. 65, 80-87
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 80-87
    • Wilson, M.S.1    Bakermans, C.2    Madsen, E.L.3
  • 254
    • 0027338087 scopus 로고
    • Bioremediation of soil contaminated with polynuclear aromatic hydrocarbons (PAHs): a review
    • Wilson, S. C., and Jones, K. C. (1993). Bioremediation of soil contaminated with polynuclear aromatic hydrocarbons (PAHs): a review. Environ. Pollut. 81, 229-249. doi: 10.1016/0269-7491(93)90206-4
    • (1993) Environ. Pollut , vol.81 , pp. 229-249
    • Wilson, S.C.1    Jones, K.C.2
  • 255
    • 20444412643 scopus 로고    scopus 로고
    • Metabolic activation of polycyclic and heterocyclic aromatic hydrocarbons and DNA damage: a review
    • Xue, W., and Warshawsky, D. (2005). Metabolic activation of polycyclic and heterocyclic aromatic hydrocarbons and DNA damage: a review. Toxicol. Appl. Pharmacol. 206, 73-93. doi: 10.1016/j.taap.2004.11.006
    • (2005) Toxicol. Appl. Pharmacol , vol.206 , pp. 73-93
    • Xue, W.1    Warshawsky, D.2
  • 256
    • 23944477886 scopus 로고    scopus 로고
    • Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons
    • Yakimov, M. M., Denaro, R., Genovese, M., Cappello, S., D'Auria, G., Chernikova, T. N., et al. (2005). Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons. Environ. Microbiol. 7, 1426-1441. doi: 10.1111/j.1462-5822.2005.00829.x
    • (2005) Environ. Microbiol , vol.7 , pp. 1426-1441
    • Yakimov, M.M.1    Denaro, R.2    Genovese, M.3    Cappello, S.4    D'Auria, G.5    Chernikova, T.N.6
  • 257
    • 0028355150 scopus 로고
    • Metabolism of naphthalene, fluorene, and phenanthrene: preliminary characterization of a cloned gene cluster from Pseudomonas putida NCIB 9816
    • Yang, Y., Chen, R. F., and Shiaris, M. P. (1994). Metabolism of naphthalene, fluorene, and phenanthrene: preliminary characterization of a cloned gene cluster from Pseudomonas putida NCIB 9816. J. Bacteriol. 176, 2158-2164
    • (1994) J. Bacteriol , vol.176 , pp. 2158-2164
    • Yang, Y.1    Chen, R.F.2    Shiaris, M.P.3
  • 258
    • 0021803921 scopus 로고
    • Regulation of naphthalene catabolic genes of plasmid NAH7
    • Yen, K. M., and Gunsalus, I. C. (1985). Regulation of naphthalene catabolic genes of plasmid NAH7. J. Bacteriol. 162, 1008-1013
    • (1985) J. Bacteriol , vol.162 , pp. 1008-1013
    • Yen, K.M.1    Gunsalus, I.C.2
  • 260
    • 32044471285 scopus 로고    scopus 로고
    • Treatment of groundwater contaminated with PAHs, gasoline hydrocarbons, and methyl tert-butyl ether in a laboratory biomass-retaining bioreactor
    • Zein, M. M., Pinto, P. X., Garcia-Blanco, S., Suidan, M. T., and Venosa, A. D. (2006). Treatment of groundwater contaminated with PAHs, gasoline hydrocarbons, and methyl tert-butyl ether in a laboratory biomass-retaining bioreactor. Biodegradation 17, 57-69. doi: 10.1007/s10532-005-3049-x
    • (2006) Biodegradation , vol.17 , pp. 57-69
    • Zein, M.M.1    Pinto, P.X.2    Garcia-Blanco, S.3    Suidan, M.T.4    Venosa, A.D.5
  • 261
    • 59449110477 scopus 로고    scopus 로고
    • Biodegradation of phenanthrene by a halophilic bacterial consortium under aerobic conditions
    • Zhao, B., Wang, H., Mao, X., and Li, R. (2009). Biodegradation of phenanthrene by a halophilic bacterial consortium under aerobic conditions. Curr. Microbiol. 58, 205-210. doi: 10.1007/s00284-008-9309-3
    • (2009) Curr. Microbiol , vol.58 , pp. 205-210
    • Zhao, B.1    Wang, H.2    Mao, X.3    Li, R.4
  • 262
    • 0036624982 scopus 로고    scopus 로고
    • Challenges in applying microarrays to environmental studies
    • Zhou, J., and Thompson, D. K. (2002). Challenges in applying microarrays to environmental studies. Curr. Opin. Biotechnol. 13, 204-207. doi: 10.1016/S0958-1669(02)00319-1
    • (2002) Curr. Opin. Biotechnol , vol.13 , pp. 204-207
    • Zhou, J.1    Thompson, D.K.2
  • 263
    • 0035167509 scopus 로고    scopus 로고
    • nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism
    • Zhou, N. Y., Fuenmayor, S. L., and Williams, P. A. (2001). nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolism. J. Bacteriol. 183, 700-708. doi: 10.1128/JB.183.2.700-708.2001
    • (2001) J. Bacteriol , vol.183 , pp. 700-708
    • Zhou, N.Y.1    Fuenmayor, S.L.2    Williams, P.A.3
  • 264
    • 0036358956 scopus 로고    scopus 로고
    • The future for culturing environmental organisms: a golden era ahead?
    • Zinder, S. H. (2002). The future for culturing environmental organisms: a golden era ahead? Environ. Microbiol. 4, 14-15. doi: 10.1046/j.1462-2920.2002.t01-3-00257.x
    • (2002) Environ. Microbiol , vol.4 , pp. 14-15
    • Zinder, S.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.