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Volumn 33, Issue , 2015, Pages 95-102

Bacterial PAH degradation in marine and terrestrial habitats

Author keywords

[No Author keywords available]

Indexed keywords

BIODEGRADATION; BIOTECHNOLOGY; CHEMICAL ANALYSIS; COMPLEX NETWORKS; ECOSYSTEMS; MARINE POLLUTION; METABOLISM; POLYCYCLIC AROMATIC HYDROCARBONS; UNCERTAINTY ANALYSIS;

EID: 84963941026     PISSN: 09581669     EISSN: 18790429     Source Type: Journal    
DOI: 10.1016/j.copbio.2015.01.006     Document Type: Review
Times cited : (103)

References (74)
  • 1
    • 84878131880 scopus 로고    scopus 로고
    • Bioremediation, an environmental remediation technology for the bioeconomy
    • Gillespie I.M.M., Philp J.C. Bioremediation, an environmental remediation technology for the bioeconomy. Trends Biotechnol 2013, 31:329-332.
    • (2013) Trends Biotechnol , vol.31 , pp. 329-332
    • Gillespie, I.M.M.1    Philp, J.C.2
  • 2
    • 84878642895 scopus 로고    scopus 로고
    • Metabolomic investigations of anaerobic hydrocarbon-impacted environments
    • Callaghan A.V. Metabolomic investigations of anaerobic hydrocarbon-impacted environments. Curr Opin Biotechnol 2013, 24:506-515.
    • (2013) Curr Opin Biotechnol , vol.24 , pp. 506-515
    • Callaghan, A.V.1
  • 3
    • 79957985337 scopus 로고    scopus 로고
    • Anaerobic degradation of non-substituted aromatic hydrocarbons
    • Meckenstock R.U., Mouttaki H. Anaerobic degradation of non-substituted aromatic hydrocarbons. Curr Opin Biotechnol 2011, 22:406-414.
    • (2011) Curr Opin Biotechnol , vol.22 , pp. 406-414
    • Meckenstock, R.U.1    Mouttaki, H.2
  • 5
    • 79951852806 scopus 로고    scopus 로고
    • Untapped potential: exploiting fungi in bioremediation of hazardous chemicals
    • Harms H., Schlosser D., Wick L.Y. Untapped potential: exploiting fungi in bioremediation of hazardous chemicals. Nat Rev Microbiol 2011, 9:177-192.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 177-192
    • Harms, H.1    Schlosser, D.2    Wick, L.Y.3
  • 6
    • 84878661925 scopus 로고    scopus 로고
    • In situ microbial metabolism of aromatic-hydrocarbon environmental pollutants
    • Jeon C.O., Madsen E.L. In situ microbial metabolism of aromatic-hydrocarbon environmental pollutants. Curr Opin Biotechnol 2013, 24:474-481.
    • (2013) Curr Opin Biotechnol , vol.24 , pp. 474-481
    • Jeon, C.O.1    Madsen, E.L.2
  • 7
    • 77953548943 scopus 로고    scopus 로고
    • Advances in the field of high-molecular-weight polycyclic aromatic hydrocarbon biodegradation by bacteria
    • Kanaly R.A., Harayama S. Advances in the field of high-molecular-weight polycyclic aromatic hydrocarbon biodegradation by bacteria. Microb Biotechnol 2010, 3:136-164.
    • (2010) Microb Biotechnol , vol.3 , pp. 136-164
    • Kanaly, R.A.1    Harayama, S.2
  • 8
    • 78651393911 scopus 로고    scopus 로고
    • Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: a review
    • Mallick S., Chakraborty J., Dutta T.K. Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: a review. Crit Rev Microbiol 2011, 37:64-90.
    • (2011) Crit Rev Microbiol , vol.37 , pp. 64-90
    • Mallick, S.1    Chakraborty, J.2    Dutta, T.K.3
  • 9
    • 58149142969 scopus 로고    scopus 로고
    • Molecular characteristics of xenobiotic-degrading sphingomonads
    • Stolz A. Molecular characteristics of xenobiotic-degrading sphingomonads. Appl Microbiol Biotechnol 2009, 81:793-811.
    • (2009) Appl Microbiol Biotechnol , vol.81 , pp. 793-811
    • Stolz, A.1
  • 10
    • 8744268521 scopus 로고    scopus 로고
    • Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons
    • Demanèche S., Meyer C., Micoud J., Louwagie M., Willison J.C., Jouanneau Y. Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons. Appl Environ Microbiol 2004, 70:6714-6725.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6714-6725
    • Demanèche, S.1    Meyer, C.2    Micoud, J.3    Louwagie, M.4    Willison, J.C.5    Jouanneau, Y.6
  • 11
    • 0037423712 scopus 로고    scopus 로고
    • Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2
    • Pinyakong O., Habe H., Yoshida T., Nojiri H., Omori T. Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2. Biochem Biophys Res Commun 2003, 301:350-357.
    • (2003) Biochem Biophys Res Commun , vol.301 , pp. 350-357
    • Pinyakong, O.1    Habe, H.2    Yoshida, T.3    Nojiri, H.4    Omori, T.5
  • 12
    • 67349163014 scopus 로고    scopus 로고
    • Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp. strain LH128 able to oxidize benz[a]anthracene
    • Schuler L., Jouanneau Y., Chadhain S.M.N., Meyer C., Pouli M., Zylstra G.J., Hols P., Agathos S.N. Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp. strain LH128 able to oxidize benz[a]anthracene. Appl Microbiol Biotechnol 2009, 83:465-475.
    • (2009) Appl Microbiol Biotechnol , vol.83 , pp. 465-475
    • Schuler, L.1    Jouanneau, Y.2    Chadhain, S.M.N.3    Meyer, C.4    Pouli, M.5    Zylstra, G.J.6    Hols, P.7    Agathos, S.N.8
  • 13
    • 84879829229 scopus 로고    scopus 로고
    • Benz[a]anthracene biotransformation and production of ring fission products by Sphingobium sp. strain KK22
    • Kunihiro M., Ozeki Y., Nogi Y., Hamamura N., Kanaly R.A. Benz[a]anthracene biotransformation and production of ring fission products by Sphingobium sp. strain KK22. Appl Environ Microbiol 2013, 79:4410-4420.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 4410-4420
    • Kunihiro, M.1    Ozeki, Y.2    Nogi, Y.3    Hamamura, N.4    Kanaly, R.A.5
  • 14
    • 84893929627 scopus 로고    scopus 로고
    • Biotransformation of the high-molecular weight polycyclic aromatic hydrocarbon (PAH) benzo[k]fluoranthene by Sphingobium sp. strain KK22 and identification of new products of non-alternant PAH biodegradation by liquid chromatography electrospray ionization
    • Maeda A.H., Nishi S., Hatada Y., Ozeki Y., Kanaly R.A. Biotransformation of the high-molecular weight polycyclic aromatic hydrocarbon (PAH) benzo[k]fluoranthene by Sphingobium sp. strain KK22 and identification of new products of non-alternant PAH biodegradation by liquid chromatography electrospray ionization. Microb Biotechnol 2014, 7:114-129.
    • (2014) Microb Biotechnol , vol.7 , pp. 114-129
    • Maeda, A.H.1    Nishi, S.2    Hatada, Y.3    Ozeki, Y.4    Kanaly, R.A.5
  • 15
    • 84857733625 scopus 로고    scopus 로고
    • Meta-Cleavage of hydroxynaphthoic acids in the degradation of phenanthrene by Sphingobium sp. strain PNB
    • Roy M., Khara P., Dutta T.K. meta-Cleavage of hydroxynaphthoic acids in the degradation of phenanthrene by Sphingobium sp. strain PNB. Microbiology 2012, 158:685-695.
    • (2012) Microbiology , vol.158 , pp. 685-695
    • Roy, M.1    Khara, P.2    Dutta, T.K.3
  • 16
    • 84897039111 scopus 로고    scopus 로고
    • Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB
    • Khara P., Roy M., Chakraborty J., Ghosal D., Dutta T.K. Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB. FEBS Open Bio 2014, 4:290-300.
    • (2014) FEBS Open Bio , vol.4 , pp. 290-300
    • Khara, P.1    Roy, M.2    Chakraborty, J.3    Ghosal, D.4    Dutta, T.K.5
  • 17
    • 84891831734 scopus 로고    scopus 로고
    • Degradative plasmids from sphingomonads
    • Stolz A. Degradative plasmids from sphingomonads. FEMS Microbiol Lett 2014, 350:9-19.
    • (2014) FEMS Microbiol Lett , vol.350 , pp. 9-19
    • Stolz, A.1
  • 18
    • 84897554989 scopus 로고    scopus 로고
    • Proteomic characterization of plasmid pLA1 for biodegradation of polycyclic aromatic hydrocarbons in the marine bacterium, Novosphingobium pentaromativorans US6-1
    • Yun S.H., Choi C.-W., Lee S.-Y., Lee Y.G., Kwon J., Leem S.H., Chung Y.H., Kahng H.-Y., Kim S.J., Kwon K.K., et al. Proteomic characterization of plasmid pLA1 for biodegradation of polycyclic aromatic hydrocarbons in the marine bacterium, Novosphingobium pentaromativorans US6-1. PLOS ONE 2014, 9:e90812.
    • (2014) PLOS ONE , vol.9
    • Yun, S.H.1    Choi, C.-W.2    Lee, S.-Y.3    Lee, Y.G.4    Kwon, J.5    Leem, S.H.6    Chung, Y.H.7    Kahng, H.-Y.8    Kim, S.J.9    Kwon, K.K.10
  • 19
    • 79952141107 scopus 로고    scopus 로고
    • Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1
    • Kweon O., Kim S.-J., Freeman J.P., Song J., Baek S., Cerniglia C.E. Substrate specificity and structural characteristics of the novel Rieske nonheme iron aromatic ring-hydroxylating oxygenases NidAB and NidA3B3 from Mycobacterium vanbaalenii PYR-1. MBio 2010, 1:e00135-e210.
    • (2010) MBio , vol.1 , pp. e00135-e210
    • Kweon, O.1    Kim, S.-J.2    Freeman, J.P.3    Song, J.4    Baek, S.5    Cerniglia, C.E.6
  • 21
    • 70349429744 scopus 로고    scopus 로고
    • Actions of Mycobacterium sp. strain AP1 on the saturated- and aromatic-hydrocarbon fractions of fuel oil in a marine medium
    • Vila J., Grifoll M. Actions of Mycobacterium sp. strain AP1 on the saturated- and aromatic-hydrocarbon fractions of fuel oil in a marine medium. Appl Environ Microbiol 2009, 75:6232-6239.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6232-6239
    • Vila, J.1    Grifoll, M.2
  • 22
    • 84899831807 scopus 로고    scopus 로고
    • First intercomparison study on the analysis of oxygenated polycyclic aromatic hydrocarbons (oxy-PAHs) and nitrogen heterocyclic polycyclic aromatic compounds (N-PACs) in contaminated soil
    • Lundstedt S., Bandowe B.A.M., Wilcke W., Boll E., Christensen J.H., Vila J., Grifoll M., Faure P., Biache C., Lorgeoux C., et al. First intercomparison study on the analysis of oxygenated polycyclic aromatic hydrocarbons (oxy-PAHs) and nitrogen heterocyclic polycyclic aromatic compounds (N-PACs) in contaminated soil. TrAC Trends Anal Chem 2014, 57:83-92.
    • (2014) TrAC Trends Anal Chem , vol.57 , pp. 83-92
    • Lundstedt, S.1    Bandowe, B.A.M.2    Wilcke, W.3    Boll, E.4    Christensen, J.H.5    Vila, J.6    Grifoll, M.7    Faure, P.8    Biache, C.9    Lorgeoux, C.10
  • 24
    • 62549095257 scopus 로고    scopus 로고
    • Bacterial diversity of a consortium degrading high-molecular-weight polycyclic aromatic hydrocarbons in a two-liquid phase biosystem
    • Lafortune I., Juteau P., Déziel E., Lépine F., Beaudet R., Villemur R. Bacterial diversity of a consortium degrading high-molecular-weight polycyclic aromatic hydrocarbons in a two-liquid phase biosystem. Microb Ecol 2009, 57:455-468.
    • (2009) Microb Ecol , vol.57 , pp. 455-468
    • Lafortune, I.1    Juteau, P.2    Déziel, E.3    Lépine, F.4    Beaudet, R.5    Villemur, R.6
  • 25
    • 77957668884 scopus 로고    scopus 로고
    • Screening and degrading characteristics and community structure of a high molecular weight polycyclic aromatic hydrocarbon-degrading bacterial consortium from contaminated soil
    • Sun R., Jin J., Sun G., Liu Y., Liu Z. Screening and degrading characteristics and community structure of a high molecular weight polycyclic aromatic hydrocarbon-degrading bacterial consortium from contaminated soil. J Environ Sci 2010, 22:1576-1585.
    • (2010) J Environ Sci , vol.22 , pp. 1576-1585
    • Sun, R.1    Jin, J.2    Sun, G.3    Liu, Y.4    Liu, Z.5
  • 26
    • 77954405374 scopus 로고    scopus 로고
    • Microbial community structure of a heavy fuel oil-degrading marine consortium: linking microbial dynamics with polycyclic aromatic hydrocarbon utilization
    • Vila J., María Nieto J., Mertens J., Springael D., Grifoll M. Microbial community structure of a heavy fuel oil-degrading marine consortium: linking microbial dynamics with polycyclic aromatic hydrocarbon utilization. FEMS Microbiol Ecol 2010, 73:349-362.
    • (2010) FEMS Microbiol Ecol , vol.73 , pp. 349-362
    • Vila, J.1    María Nieto, J.2    Mertens, J.3    Springael, D.4    Grifoll, M.5
  • 29
    • 70349994811 scopus 로고    scopus 로고
    • Microbial populations related to PAH biodegradation in an aged biostimulated creosote-contaminated soil
    • Lladó S., Jiménez N., Viñas M., Solanas A.M. Microbial populations related to PAH biodegradation in an aged biostimulated creosote-contaminated soil. Biodegradation 2009, 20:593-601.
    • (2009) Biodegradation , vol.20 , pp. 593-601
    • Lladó, S.1    Jiménez, N.2    Viñas, M.3    Solanas, A.M.4
  • 30
    • 84884130844 scopus 로고    scopus 로고
    • Fungal and bacterial microbial community assessment during bioremediation assays in an aged creosote-polluted soil
    • Lladó S., Gràcia E., Solanas A.M., Viñas M. Fungal and bacterial microbial community assessment during bioremediation assays in an aged creosote-polluted soil. Soil Biol Biochem 2013, 67:114-123.
    • (2013) Soil Biol Biochem , vol.67 , pp. 114-123
    • Lladó, S.1    Gràcia, E.2    Solanas, A.M.3    Viñas, M.4
  • 32
    • 80054006440 scopus 로고    scopus 로고
    • Pyrosequence analysis of bacterial communities in aerobic bioreactors treating polycyclic aromatic hydrocarbon-contaminated soil
    • Singleton D.R., Richardson S.D., Aitken M.D. Pyrosequence analysis of bacterial communities in aerobic bioreactors treating polycyclic aromatic hydrocarbon-contaminated soil. Biodegradation 2011, 22:1061-1073.
    • (2011) Biodegradation , vol.22 , pp. 1061-1073
    • Singleton, D.R.1    Richardson, S.D.2    Aitken, M.D.3
  • 33
    • 84883556613 scopus 로고    scopus 로고
    • Pyrosequence analyses of bacterial communities during simulated in situ bioremediation of polycyclic aromatic hydrocarbon-contaminated soil
    • Singleton D.R., Jones M.D., Richardson S.D., Aitken M.D. Pyrosequence analyses of bacterial communities during simulated in situ bioremediation of polycyclic aromatic hydrocarbon-contaminated soil. Appl Microbiol Biotechnol 2013, 97:8381-8391.
    • (2013) Appl Microbiol Biotechnol , vol.97 , pp. 8381-8391
    • Singleton, D.R.1    Jones, M.D.2    Richardson, S.D.3    Aitken, M.D.4
  • 34
    • 65549132346 scopus 로고    scopus 로고
    • Characterization of a polycyclic aromatic hydrocarbon degradation gene cluster in a phenanthrene-degrading Acidovorax strain
    • Singleton D.R., Ramirez L.G., Aitken M.D. Characterization of a polycyclic aromatic hydrocarbon degradation gene cluster in a phenanthrene-degrading Acidovorax strain. Appl Environ Microbiol 2009, 75:2613-2620.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2613-2620
    • Singleton, D.R.1    Ramirez, L.G.2    Aitken, M.D.3
  • 35
    • 19144372182 scopus 로고    scopus 로고
    • Stable isotope probing-linking microbial identity to function
    • Dumont M.G., Murrell J.C. Stable isotope probing-linking microbial identity to function. Nat Rev Microbiol 2005, 3:499-504.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 499-504
    • Dumont, M.G.1    Murrell, J.C.2
  • 36
    • 84902250006 scopus 로고    scopus 로고
    • Community structure and PAH ring-hydroxylating dioxygenase genes of a marine pyrene-degrading microbial consortium
    • Gallego S., Vila J., Tauler M., Nieto J.M., Breugelmans P., Springael D., Grifoll M. Community structure and PAH ring-hydroxylating dioxygenase genes of a marine pyrene-degrading microbial consortium. Biodegradation 2014, 25:543-556.
    • (2014) Biodegradation , vol.25 , pp. 543-556
    • Gallego, S.1    Vila, J.2    Tauler, M.3    Nieto, J.M.4    Breugelmans, P.5    Springael, D.6    Grifoll, M.7
  • 40
    • 77949389509 scopus 로고    scopus 로고
    • Gallaecimonas pentaromativorans gen. nov., sp. nov., a bacterium carrying 16S rRNA gene heterogeneity and able to degrade high-molecular-mass polycyclic aromatic hydrocarbons
    • Rodríguez-Blanco A., Vetion G., Escande M.-L., Delille D., Ghiglione J.-F. Gallaecimonas pentaromativorans gen. nov., sp. nov., a bacterium carrying 16S rRNA gene heterogeneity and able to degrade high-molecular-mass polycyclic aromatic hydrocarbons. Int J Syst Evol Microbiol 2010, 60:504-509.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 504-509
    • Rodríguez-Blanco, A.1    Vetion, G.2    Escande, M.-L.3    Delille, D.4    Ghiglione, J.-F.5
  • 41
    • 61449093226 scopus 로고    scopus 로고
    • A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1
    • Wang B., Lai Q., Cui Z., Tan T., Shao Z. A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1. Environ Microbiol 2008, 10:1948-1963.
    • (2008) Environ Microbiol , vol.10 , pp. 1948-1963
    • Wang, B.1    Lai, Q.2    Cui, Z.3    Tan, T.4    Shao, Z.5
  • 42
    • 83155184860 scopus 로고    scopus 로고
    • Stable isotope probing of an algal bloom to identify uncultivated members of the Rhodobacteraceae associated with low-molecular-weight polycyclic aromatic hydrocarbon degradation
    • Gutierrez T., Singleton D.R., Aitken M.D., Semple K.T. Stable isotope probing of an algal bloom to identify uncultivated members of the Rhodobacteraceae associated with low-molecular-weight polycyclic aromatic hydrocarbon degradation. Appl Environ Microbiol 2011, 77:7856-7860.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7856-7860
    • Gutierrez, T.1    Singleton, D.R.2    Aitken, M.D.3    Semple, K.T.4
  • 43
    • 84892452505 scopus 로고    scopus 로고
    • Polycyclic aromatic hydrocarbon degradation of phytoplankton-associated Arenibacter spp. and description of Arenibacter algicola sp. nov., an aromatic hydrocarbon-degrading bacterium
    • Gutierrez T., Rhodes G., Mishamandani S., Berry D., Whitman W.B., Nichols P.D., Semple K.T., Aitken M.D. Polycyclic aromatic hydrocarbon degradation of phytoplankton-associated Arenibacter spp. and description of Arenibacter algicola sp. nov., an aromatic hydrocarbon-degrading bacterium. Appl Environ Microbiol 2014, 80:618-628.
    • (2014) Appl Environ Microbiol , vol.80 , pp. 618-628
    • Gutierrez, T.1    Rhodes, G.2    Mishamandani, S.3    Berry, D.4    Whitman, W.B.5    Nichols, P.D.6    Semple, K.T.7    Aitken, M.D.8
  • 44
    • 84871874203 scopus 로고    scopus 로고
    • Polycyclovorans algicola gen. nov., sp. nov., an aromatic-hydrocarbon-degrading marine bacterium found associated with laboratory cultures of marine phytoplankton
    • Gutierrez T., Green D.H., Nichols P.D., Whitman W.B., Semple K.T., Aitken M.D. Polycyclovorans algicola gen. nov., sp. nov., an aromatic-hydrocarbon-degrading marine bacterium found associated with laboratory cultures of marine phytoplankton. Appl Environ Microbiol 2013, 79:205-214.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 205-214
    • Gutierrez, T.1    Green, D.H.2    Nichols, P.D.3    Whitman, W.B.4    Semple, K.T.5    Aitken, M.D.6
  • 45
    • 84886727312 scopus 로고    scopus 로고
    • Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation DNA-SIP
    • Gutierrez T., Singleton D.R., Berry D., Yang T., Aitken M.D., Teske A. Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation DNA-SIP. ISME J 2013, 7:2091-2104.
    • (2013) ISME J , vol.7 , pp. 2091-2104
    • Gutierrez, T.1    Singleton, D.R.2    Berry, D.3    Yang, T.4    Aitken, M.D.5    Teske, A.6
  • 46
    • 84916213816 scopus 로고    scopus 로고
    • Association of growth substrates and bacterial genera with benzo[a]pyrene mineralization in contaminated soil
    • Jones M., Rodgers-Vieira E. Association of growth substrates and bacterial genera with benzo[a]pyrene mineralization in contaminated soil. Environ Eng Sci 2014, 10.1089/ees.2014.0275.
    • (2014) Environ Eng Sci
    • Jones, M.1    Rodgers-Vieira, E.2
  • 47
    • 79952088555 scopus 로고    scopus 로고
    • Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates
    • Cébron A., Louvel B., Faure P., France-Lanord C., Chen Y., Murrell J.C., Leyval C. Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates. Environ Microbiol 2011, 13:722-736.
    • (2011) Environ Microbiol , vol.13 , pp. 722-736
    • Cébron, A.1    Louvel, B.2    Faure, P.3    France-Lanord, C.4    Chen, Y.5    Murrell, J.C.6    Leyval, C.7
  • 48
    • 80053639286 scopus 로고    scopus 로고
    • Stable-isotope probing of the polycyclic aromatic hydrocarbon-degrading bacterial guild in a contaminated soil
    • Jones M.D., Crandell D.W., Singleton D.R., Aitken M.D. Stable-isotope probing of the polycyclic aromatic hydrocarbon-degrading bacterial guild in a contaminated soil. Environ Microbiol 2011, 13:2623-2632.
    • (2011) Environ Microbiol , vol.13 , pp. 2623-2632
    • Jones, M.D.1    Crandell, D.W.2    Singleton, D.R.3    Aitken, M.D.4
  • 49
    • 79955579627 scopus 로고    scopus 로고
    • Multiple DNA extractions coupled with stable-isotope probing of anthracene-degrading bacteria in contaminated soil
    • Jones M.D., Singleton D.R., Sun W., Aitken M.D. Multiple DNA extractions coupled with stable-isotope probing of anthracene-degrading bacteria in contaminated soil. Appl Environ Microbiol 2011, 77:2984-2991.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2984-2991
    • Jones, M.D.1    Singleton, D.R.2    Sun, W.3    Aitken, M.D.4
  • 51
    • 33748291406 scopus 로고    scopus 로고
    • Identification and quantification of uncultivated Proteobacteria associated with pyrene degradation in a bioreactor treating PAH-contaminated soil
    • Singleton D.R., Sangaiah R., Gold A., Ball L.M., Aitken M.D. Identification and quantification of uncultivated Proteobacteria associated with pyrene degradation in a bioreactor treating PAH-contaminated soil. Environ Microbiol 2006, 8:1736-1745.
    • (2006) Environ Microbiol , vol.8 , pp. 1736-1745
    • Singleton, D.R.1    Sangaiah, R.2    Gold, A.3    Ball, L.M.4    Aitken, M.D.5
  • 52
    • 84861117351 scopus 로고    scopus 로고
    • Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium
    • Singleton D.R., Hu J., Aitken M.D. Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium. Appl Environ Microbiol 2012, 78:3552-3559.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 3552-3559
    • Singleton, D.R.1    Hu, J.2    Aitken, M.D.3
  • 53
    • 84914142509 scopus 로고    scopus 로고
    • Characterization of novel polycyclic aromatic hydrocarbon dioxygenases from the bacterial metagenomic DNA of a contaminated soil
    • Chemerys A., Pelletier E., Cruaud C., Martin F., Violet F., Jouanneau Y. Characterization of novel polycyclic aromatic hydrocarbon dioxygenases from the bacterial metagenomic DNA of a contaminated soil. Appl Environ Microbiol 2014, 80:6591-6600.
    • (2014) Appl Environ Microbiol , vol.80 , pp. 6591-6600
    • Chemerys, A.1    Pelletier, E.2    Cruaud, C.3    Martin, F.4    Violet, F.5    Jouanneau, Y.6
  • 55
    • 79958257334 scopus 로고    scopus 로고
    • Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples
    • Iwai S., Johnson T.A., Chai B., Hashsham S.A., Tiedje J.M. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Appl Environ Microbiol 2011, 77:3551-3557.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 3551-3557
    • Iwai, S.1    Johnson, T.A.2    Chai, B.3    Hashsham, S.A.4    Tiedje, J.M.5
  • 56
    • 78650064329 scopus 로고    scopus 로고
    • Metabolic networks, microbial ecology and "omics" technologies: towards understanding in situ biodegradation processes
    • Vilchez-Vargas R., Junca H., Pieper D.H. Metabolic networks, microbial ecology and "omics" technologies: towards understanding in situ biodegradation processes. Environ Microbiol 2010, 12:3089-3104.
    • (2010) Environ Microbiol , vol.12 , pp. 3089-3104
    • Vilchez-Vargas, R.1    Junca, H.2    Pieper, D.H.3
  • 58
    • 66449093988 scopus 로고    scopus 로고
    • Microbial community structure and biodegradation activity of particle-associated bacteria in a coal tar contaminated creek
    • DeBruyn J.M., Sayler G.S. Microbial community structure and biodegradation activity of particle-associated bacteria in a coal tar contaminated creek. Environ Sci Technol 2009, 43:3047-3053.
    • (2009) Environ Sci Technol , vol.43 , pp. 3047-3053
    • DeBruyn, J.M.1    Sayler, G.S.2
  • 59
    • 70349410312 scopus 로고    scopus 로고
    • Influence of vegetation on the in situ bacterial community and polycyclic aromatic hydrocarbon (PAH) degraders in aged PAH-contaminated or thermal-desorption-treated soil
    • Cébron A., Beguiristain T., Faure P., Norini M.-P., Masfaraud J.-F., Leyval C. Influence of vegetation on the in situ bacterial community and polycyclic aromatic hydrocarbon (PAH) degraders in aged PAH-contaminated or thermal-desorption-treated soil. Appl Environ Microbiol 2009, 75:6322-6330.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 6322-6330
    • Cébron, A.1    Beguiristain, T.2    Faure, P.3    Norini, M.-P.4    Masfaraud, J.-F.5    Leyval, C.6
  • 60
    • 84878019850 scopus 로고    scopus 로고
    • Diversity and catalytic potential of PAH-specific ring-hydroxylating dioxygenases from a hydrocarbon-contaminated soil
    • Martin F., Malagnoux L., Violet F., Jakoncic J., Jouanneau Y. Diversity and catalytic potential of PAH-specific ring-hydroxylating dioxygenases from a hydrocarbon-contaminated soil. Appl Microbiol Biotechnol 2013, 97:5125-5135.
    • (2013) Appl Microbiol Biotechnol , vol.97 , pp. 5125-5135
    • Martin, F.1    Malagnoux, L.2    Violet, F.3    Jakoncic, J.4    Jouanneau, Y.5
  • 61
    • 84860381912 scopus 로고    scopus 로고
    • Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment
    • Jin H.M., Kim J.M., Lee H.J., Madsen E.L., Jeon C.O. Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment. Environ Sci Technol 2012, 46:7731-7740.
    • (2012) Environ Sci Technol , vol.46 , pp. 7731-7740
    • Jin, H.M.1    Kim, J.M.2    Lee, H.J.3    Madsen, E.L.4    Jeon, C.O.5
  • 62
    • 76349086053 scopus 로고    scopus 로고
    • Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment
    • Iwai S., Chai B., Sul W.J., Cole J.R., Hashsham S.A., Tiedje J.M. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. ISME J 2010, 4:279-285.
    • (2010) ISME J , vol.4 , pp. 279-285
    • Iwai, S.1    Chai, B.2    Sul, W.J.3    Cole, J.R.4    Hashsham, S.A.5    Tiedje, J.M.6
  • 63
    • 77956094278 scopus 로고    scopus 로고
    • GeoChip F 3.0 as a high-throughput tool for analyzing microbial community composition, structure functional activity
    • He Z., Deng Y., Van Nostrand J.D., Tu Q., Xu M., Hemme C.L., Li X., Wu L., Gentry T.J., Yin Y., et al. GeoChip F 3.0 as a high-throughput tool for analyzing microbial community composition, structure functional activity. ISME J 2010, 4:1167-1179.
    • (2010) ISME J , vol.4 , pp. 1167-1179
    • He, Z.1    Deng, Y.2    Van Nostrand, J.D.3    Tu, Q.4    Xu, M.5    Hemme, C.L.6    Li, X.7    Wu, L.8    Gentry, T.J.9    Yin, Y.10
  • 64
    • 84875838108 scopus 로고    scopus 로고
    • Use of functional gene arrays for elucidating in situ biodegradation
    • Van Nostrand J.D., He Z., Zhou J. Use of functional gene arrays for elucidating in situ biodegradation. Front Microbiol 2012, 3:339.
    • (2012) Front Microbiol , vol.3 , pp. 339
    • Van Nostrand, J.D.1    He, Z.2    Zhou, J.3
  • 67
    • 84905009868 scopus 로고    scopus 로고
    • The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill
    • Kappell A.D., Wei Y., Newton R.J., Van Nostrand J.D., Zhou J., McLellan S.L., Hristova K.R. The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill. Front Microbiol 2014, 5:205.
    • (2014) Front Microbiol , vol.5 , pp. 205
    • Kappell, A.D.1    Wei, Y.2    Newton, R.J.3    Van Nostrand, J.D.4    Zhou, J.5    McLellan, S.L.6    Hristova, K.R.7
  • 68
    • 84875885665 scopus 로고    scopus 로고
    • Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system
    • Vilchez-Vargas R., Geffers R., Suárez-Diez M., Conte I., Waliczek A., Kaser V.S., Kralova M., Junca H., Pieper D.H. Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system. Environ Microbiol 2013, 15:1016-1039.
    • (2013) Environ Microbiol , vol.15 , pp. 1016-1039
    • Vilchez-Vargas, R.1    Geffers, R.2    Suárez-Diez, M.3    Conte, I.4    Waliczek, A.5    Kaser, V.S.6    Kralova, M.7    Junca, H.8    Pieper, D.H.9
  • 71
    • 84860376498 scopus 로고    scopus 로고
    • Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism
    • Math R.K., Jin H.M., Kim J.M., Hahn Y., Park W., Madsen E.L., Jeon C.O. Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism. PLOS ONE 2012, 7:e35784.
    • (2012) PLOS ONE , vol.7
    • Math, R.K.1    Jin, H.M.2    Kim, J.M.3    Hahn, Y.4    Park, W.5    Madsen, E.L.6    Jeon, C.O.7
  • 72
    • 79961139917 scopus 로고    scopus 로고
    • Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2
    • Jin H.M., Jeong H., Moon E., Math R.K., Lee K., Kim H.-J., Jeon C.O., Oh T.K., Kim J.F. Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2. J Bacteriol 2011, 193:4292-4293.
    • (2011) J Bacteriol , vol.193 , pp. 4292-4293
    • Jin, H.M.1    Jeong, H.2    Moon, E.3    Math, R.K.4    Lee, K.5    Kim, H.-J.6    Jeon, C.O.7    Oh, T.K.8    Kim, J.F.9
  • 74
    • 84885365879 scopus 로고    scopus 로고
    • Microbial formation and degradation of oxygen-containing polycyclic aromatic hydrocarbons (OPAHs) in soil during short-term incubation
    • Wilcke W., Kiesewetter M., Bandowe B.M. Microbial formation and degradation of oxygen-containing polycyclic aromatic hydrocarbons (OPAHs) in soil during short-term incubation. Environ Pollut 2014, 184:385-390.
    • (2014) Environ Pollut , vol.184 , pp. 385-390
    • Wilcke, W.1    Kiesewetter, M.2    Bandowe, B.M.3


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