메뉴 건너뛰기




Volumn 180, Issue 18, 1998, Pages 4765-4774

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RIBOSOME RNA;

EID: 0031662188     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.180.18.4765-4774.1998     Document Type: Short Survey
Times cited : (1985)

References (53)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 2
    • 0029832927 scopus 로고    scopus 로고
    • Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
    • Barns, S. M., C. F. Delwiche, J. D. Palmer, and N. R. Pace. 1996. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. USA 93:9188-9193.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9188-9193
    • Barns, S.M.1    Delwiche, C.F.2    Palmer, J.D.3    Pace, N.R.4
  • 3
    • 0027105895 scopus 로고
    • Origin and early evolution of photosynthesis
    • Blankenship, R. E. 1992. Origin and early evolution of photosynthesis. Photosynth. Res. 33:91-111.
    • (1992) Photosynth. Res. , vol.33 , pp. 91-111
    • Blankenship, R.E.1
  • 4
    • 0029025721 scopus 로고
    • Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
    • Bond, P. L., P. Hugenholtz, J. Keller, and L. L. Blackall. 1995. Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl. Environ. Microbiol. 61:1910-1916.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1910-1916
    • Bond, P.L.1    Hugenholtz, P.2    Keller, J.3    Blackall, L.L.4
  • 5
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman, J., and E. W. Triplett. 1997. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63:2647-2653.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 6
    • 0031149569 scopus 로고    scopus 로고
    • Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries
    • Chandler, D. P., J. K. Fredrickson, and F. J. Brockman. 1997. Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Mol. Ecol. 6:475-482.
    • (1997) Mol. Ecol. , vol.6 , pp. 475-482
    • Chandler, D.P.1    Fredrickson, J.K.2    Brockman, F.J.3
  • 7
    • 0028026970 scopus 로고
    • A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment
    • Devereux, R., and G. W. Mundfrom. 1994. A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment. Appl. Environ. Microbiol. 60:3437-3439.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3437-3439
    • Devereux, R.1    Mundfrom, G.W.2
  • 8
    • 3543056068 scopus 로고    scopus 로고
    • Personal communication
    • Dewhirst, F. 1998. Personal communication.
    • (1998)
    • Dewhirst, F.1
  • 9
    • 85087576107 scopus 로고    scopus 로고
    • Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation
    • in press
    • Dojka, M. A., P. Hugenholtz, S. K. Haack, and N. R. Pace. Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl. Environ. Microbiol., in press.
    • Appl. Environ. Microbiol.
    • Dojka, M.A.1    Hugenholtz, P.2    Haack, S.K.3    Pace, N.R.4
  • 10
    • 3543111113 scopus 로고    scopus 로고
    • Personal communication
    • Durand, P. 1998. Personal communication.
    • (1998)
    • Durand, P.1
  • 11
    • 0029121005 scopus 로고
    • A new obligately chemolithoautotrophic, nitrate-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship
    • Enrich, S., D. Behrens, E. Lebedeva, W. Ludwig, and E. Bock. 1995. A new obligately chemolithoautotrophic, nitrate-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship. Arch. Microbiol. 164: 16-23.
    • (1995) Arch. Microbiol. , vol.164 , pp. 16-23
    • Enrich, S.1    Behrens, D.2    Lebedeva, E.3    Ludwig, W.4    Bock, E.5
  • 12
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
    • Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 13
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 59:1294-1302.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 15
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digester as determined by small-subunit rDNA sequence analysis
    • Godon, J.-J., E. Zumstein, P. Dabert, F. Habouzit, and R. Moletta. 1997. Molecular microbial diversity of an anaerobic digester as determined by small-subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63:2802-2813.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2802-2813
    • Godon, J.-J.1    Zumstein, E.2    Dabert, P.3    Habouzit, F.4    Moletta, R.5
  • 16
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter in the Atlantic and Pacific oceans
    • Gordon, D. A., and S. J. Giovannoni. 1996. Detection of stratified microbial populations related to Chlorobium and Fibrobacter in the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 62:1171-1177.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 17
    • 0030778930 scopus 로고    scopus 로고
    • Verrucomicrobia div. nov., a new division of the Bacteria containing three new species of Prosthecobacter
    • Hedlund, B. P., J. J. Gosink, and J. T. Staley. 1997. Verrucomicrobia div. nov., a new division of the Bacteria containing three new species of Prosthecobacter. Antonie Leeuwenhoek 72:29-38.
    • (1997) Antonie Leeuwenhoek , vol.72 , pp. 29-38
    • Hedlund, B.P.1    Gosink, J.J.2    Staley, J.T.3
  • 18
    • 0028880346 scopus 로고
    • Phylogenetic position of the menaquinone-containing acidophilic chemoorganotroph Acidobacterium capsulatum
    • Hiraishi, A., N. Kishimoto, Y. Kosako, N. Wakao, and T. Tano. 1995. Phylogenetic position of the menaquinone-containing acidophilic chemoorganotroph Acidobacterium capsulatum. FEMS Microbiol. Lett. 132:91-94.
    • (1995) FEMS Microbiol. Lett. , vol.132 , pp. 91-94
    • Hiraishi, A.1    Kishimoto, N.2    Kosako, Y.3    Wakao, N.4    Tano, T.5
  • 20
    • 0029970177 scopus 로고    scopus 로고
    • Identifying microbial diversity in the natural environment: A molecular phylogenetic approach
    • Hugenholtz, P., and N. R. Pace. 1996. Identifying microbial diversity in the natural environment: a molecular phylogenetic approach. Trends Biotechnol. 14:190-197.
    • (1996) Trends Biotechnol. , vol.14 , pp. 190-197
    • Hugenholtz, P.1    Pace, N.R.2
  • 21
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., C. Pitulle, K. L. Hershberger, and N. R. Pace. 1998. Novel division level bacterial diversity in a Yellowstone hot spring. J. Bacteriol. 180: 366-376.
    • (1998) J. Bacteriol. , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 22
    • 0030613344 scopus 로고    scopus 로고
    • Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
    • Janssen, P. H., A. Schuhmann, E. Morschel, and F. A. Rainey. 1997. Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl. Environ. Microbiol. 63:1382-1388.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1382-1388
    • Janssen, P.H.1    Schuhmann, A.2    Morschel, E.3    Rainey, F.A.4
  • 23
    • 0028082207 scopus 로고
    • Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
    • Kopczynski, E. D., M. M. Bateson, and D. M. Ward. 1994. Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Environ. Microbiol. 60:746-748.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 746-748
    • Kopczynski, E.D.1    Bateson, M.M.2    Ward, D.M.3
  • 24
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske, C. R., S. M. Barns, and J. D. Busch. 1997. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl. Environ. Microbiol. 63:3614-3621.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 25
    • 0030438385 scopus 로고    scopus 로고
    • Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
    • Lee, S.-Y., J. Bollinger, D. Bezdicek, and A. Ogram. 1996. Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl. Environ. Microbiol. 62:3787-3793.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3787-3793
    • Lee, S.-Y.1    Bollinger, J.2    Bezdicek, D.3    Ogram, A.4
  • 26
    • 0027937278 scopus 로고
    • Holophaga foetida gen. nov., sp. nov., a new homoacetogenic bacterium degrading methoxylated aromatic compounds
    • Liesack, W., F. Bak, J. U. Kreft, and E. Stackebrandt. 1994. Holophaga foetida gen. nov., sp. nov., a new homoacetogenic bacterium degrading methoxylated aromatic compounds. Arch. Microbiol. 162:85-90.
    • (1994) Arch. Microbiol. , vol.162 , pp. 85-90
    • Liesack, W.1    Bak, F.2    Kreft, J.U.3    Stackebrandt, E.4
  • 27
    • 0026786101 scopus 로고
    • The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees - Intrafamily relationships and the phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences
    • Liesack, W., R. Soller, T. Stewart, H. Haas, S. Giovannoni, and E. Stackebrandt. 1992. The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees - intrafamily relationships and the phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences. Syst. Appl. Microbiol. 15:357-362.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 357-362
    • Liesack, W.1    Soller, R.2    Stewart, T.3    Haas, H.4    Giovannoni, S.5    Stackebrandt, E.6
  • 31
    • 0344622120 scopus 로고    scopus 로고
    • Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
    • Maymo-Gatell, X., Y.-T. Chien, J. Gossett, and S. Zinder. 1997. Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276:1568-1571.
    • (1997) Science , vol.276 , pp. 1568-1571
    • Maymo-Gatell, X.1    Chien, Y.-T.2    Gossett, J.3    Zinder, S.4
  • 32
    • 0028976424 scopus 로고
    • Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C. L., F. C. Dobbs, and D. M. Karl. 1995. Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 61:1555-1562.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1555-1562
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 33
    • 0030031972 scopus 로고    scopus 로고
    • Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus
    • Ohkuma, M., and T. Kudo. 1996. Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus. Appl. Environ. Microbiol. 62:461-468.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 461-468
    • Ohkuma, M.1    Kudo, T.2
  • 34
    • 0030982247 scopus 로고    scopus 로고
    • A molecular view of microbial diversity and the biosphere
    • Pace, N. R. 1997. A molecular view of microbial diversity and the biosphere. Science 276:734-740.
    • (1997) Science , vol.276 , pp. 734-740
    • Pace, N.R.1
  • 35
    • 0002842298 scopus 로고
    • The analysis of natural microbial populations by ribosomal RNA sequences
    • Pace, N. R., D. A. Stahl, D. J. Lane, and G. J. Olsen. 1986. The analysis of natural microbial populations by ribosomal RNA sequences. Adv. Microb. Ecol. 9:1-55.
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 1-55
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 37
    • 0028308089 scopus 로고
    • Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring. Yellowstone National Park
    • Reysenbach, A.-L., G. S. Wickham, and N. R. Pace. 1994. Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring. Yellowstone National Park. Appl. Environ. Microbiol. 60:2113-2119.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2113-2119
    • Reysenbach, A.-L.1    Wickham, G.S.2    Pace, N.R.3
  • 38
    • 0030483155 scopus 로고    scopus 로고
    • A molecular approach to search for diversity among bacteria in the environment
    • Rheims, H., F. A. Rainey, and E. Stackebrandt. 1996. A molecular approach to search for diversity among bacteria in the environment. J. Ind. Microbiol. 17:159-169.
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 159-169
    • Rheims, H.1    Rainey, F.A.2    Stackebrandt, E.3
  • 39
    • 0008324531 scopus 로고
    • Prokaryotes and their habitats
    • A. Balows, H. G. Truper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), Springer-Verlag, New York, N.Y.
    • Schlegel, H. G., and H. W. Jannasch. 1992. Prokaryotes and their habitats, p. 75-125. In A. Balows, H. G. Truper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes, vol. I. Springer-Verlag, New York, N.Y.
    • (1992) The Prokaryotes , vol.1 , pp. 75-125
    • Schlegel, H.G.1    Jannasch, H.W.2
  • 40
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T. M., E. F. DeLong, and N. R. Pace. 1991. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173:4371-4378.
    • (1991) J. Bacteriol. , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    DeLong, E.F.2    Pace, N.R.3
  • 41
    • 0023720656 scopus 로고
    • Proteobacteria classis nov., a name for the phylogenetic taxon that includes the "purple bacteria and their relatives."
    • Stackebrandt, E., R. G. E. Murray, and H. G. Truper. 1988. Proteobacteria classis nov., a name for the phylogenetic taxon that includes the "purple bacteria and their relatives." Int. J. Syst. Bacteriol. 38:321-325.
    • (1988) Int. J. Syst. Bacteriol. , vol.38 , pp. 321-325
    • Stackebrandt, E.1    Murray, R.G.E.2    Truper, H.G.3
  • 42
    • 0030893495 scopus 로고    scopus 로고
    • Proposal for a new hierarchic classification system, Actinobacteria classis nov.
    • Stackebrandt, E., F. A. Rainey, and N. L. Ward-Rainey. 1997. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int. J. Syst. Bacteriol. 47:479-491.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 479-491
    • Stackebrandt, E.1    Rainey, F.A.2    Ward-Rainey, N.L.3
  • 44
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 46
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345:63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 47
    • 0029584840 scopus 로고
    • Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain Bacteria
    • Ward-Rainey, N., F. A. Rainey, H. Schlesner, and E. Stackebrandt. 1995. Assignment of hitherto unidentified 16S rDNA species to a main line of descent within the domain Bacteria. Microbiology 141:3247-3250.
    • (1995) Microbiology , vol.141 , pp. 3247-3250
    • Ward-Rainey, N.1    Rainey, F.A.2    Schlesner, H.3    Stackebrandt, E.4
  • 48
  • 49
    • 0026439890 scopus 로고
    • Uncultivated cyanobacteria. Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat
    • Weller, R., M. M. Bateson, B. K. Heimbuch, E. D. Kopczynski, and D. M. Ward. 1992. Uncultivated cyanobacteria. Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat. Appl. Environ. Microbiol. 58:3964-3969.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3964-3969
    • Weller, R.1    Bateson, M.M.2    Heimbuch, B.K.3    Kopczynski, E.D.4    Ward, D.M.5
  • 50
    • 0025731189 scopus 로고
    • 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA
    • Weller, R., J. Weller, and D. M. Ward. 1991. 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA. Appl. Environ. Microbiol. 57:1146-1151.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1146-1151
    • Weller, R.1    Weller, J.2    Ward, D.M.3
  • 51
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 52
    • 0025047647 scopus 로고
    • Architecture of ribosomal RNA: Constraints on the sequence of tetra-loops
    • Woese, C. R., S. Winker, and R. R. Gutell. 1990. Architecture of ribosomal RNA: constraints on the sequence of tetra-loops. Proc. Natl. Acad. Sci. USA 87:8467-8471.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 8467-8471
    • Woese, C.R.1    Winker, S.2    Gutell, R.R.3
  • 53
    • 0031436948 scopus 로고    scopus 로고
    • Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
    • Zhou, J., M. E. Davey, J. B. Figueras, E. Rivkina, D. Gilichinsky, and J. M. Tiedje. 1997. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology 143:3913-3919.
    • (1997) Microbiology , vol.143 , pp. 3913-3919
    • Zhou, J.1    Davey, M.E.2    Figueras, J.B.3    Rivkina, E.4    Gilichinsky, D.5    Tiedje, J.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.