메뉴 건너뛰기




Volumn 187, Issue 23, 2005, Pages 7996-8005

Growth substrate- and phase-specific expression of biphenyl, benzoate, and C 1 metabolic pathways in Burkholderia xenovorans LB400

Author keywords

[No Author keywords available]

Indexed keywords

BENZOIC ACID; BENZOYL COENZYME A; BIPHENYL; CATECHOL; COENZYME A; OUTER MEMBRANE PROTEIN; POLYCHLORINATED BIPHENYL; PROTEOME; SUCCINIC ACID; UNCLASSIFIED DRUG;

EID: 28044450599     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.187.23.7996-8005.2005     Document Type: Article
Times cited : (85)

References (43)
  • 1
    • 0022621961 scopus 로고
    • Rapid assay for screening and characterizing microorganisms for the ability to degrade polychlorinated biphenyls
    • Bedard, D. L., R. Unterman, L. H. Bopp, M. J. Brennan, M. L. Haberl, and C. Johnson. 1986. Rapid assay for screening and characterizing microorganisms for the ability to degrade polychlorinated biphenyls. Appl. Environ. Microbiol. 4:761-768.
    • (1986) Appl. Environ. Microbiol. , vol.4 , pp. 761-768
    • Bedard, D.L.1    Unterman, R.2    Bopp, L.H.3    Brennan, M.J.4    Haberl, M.L.5    Johnson, C.6
  • 2
    • 0034858419 scopus 로고    scopus 로고
    • Analysis of transcription of the bph locus of Burkholderia sp. strain LB400 and evidence that the ORF0 gene product acts as a regulator of the bphA1 promotor
    • Beltrametti, F., D. Reniero, S. Backhaus, and B. Hofer. 2001. Analysis of transcription of the bph locus of Burkholderia sp. strain LB400 and evidence that the ORF0 gene product acts as a regulator of the bphA1 promotor. Microbiology 147:2169-2182.
    • (2001) Microbiology , vol.147 , pp. 2169-2182
    • Beltrametti, F.1    Reniero, D.2    Backhaus, S.3    Hofer, B.4
  • 3
    • 0022527656 scopus 로고
    • Degradation of highly chlorinated PCBs by Pseudomonas strain LB400
    • Bopp, L. H. 1986. Degradation of highly chlorinated PCBs by Pseudomonas strain LB400. J. Ind. Microbiol. 1:23-29.
    • (1986) J. Ind. Microbiol. , vol.1 , pp. 23-29
    • Bopp, L.H.1
  • 4
    • 0029854169 scopus 로고    scopus 로고
    • Mutation of the Bacillus subtilis alkyl hydroperoxide reductase (ahpCF) operon reveals compensatory interactions among hydrogen peroxide stress genes
    • Bsat, N., L. Chen, and J. D. Helmann. 1996. Mutation of the Bacillus subtilis alkyl hydroperoxide reductase (ahpCF) operon reveals compensatory interactions among hydrogen peroxide stress genes. J. Bacteriol. 178:6579-6586.
    • (1996) J. Bacteriol. , vol.178 , pp. 6579-6586
    • Bsat, N.1    Chen, L.2    Helmann, J.D.3
  • 5
    • 2442678163 scopus 로고    scopus 로고
    • Growth of polychlorinated biphenyl-degrading bacteria in the presence of biphenyl and chlorobiphenyls generates oxidative stress and massive accumulation of inorganic polyphosphate
    • Chavez, F. P., H. Lunsdorf, and C. A. Jerez. 2004. Growth of polychlorinated biphenyl-degrading bacteria in the presence of biphenyl and chlorobiphenyls generates oxidative stress and massive accumulation of inorganic polyphosphate. Appl. Environ. Microbiol. 70:3064-3072.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3064-3072
    • Chavez, F.P.1    Lunsdorf, H.2    Jerez, C.A.3
  • 6
    • 0034043397 scopus 로고    scopus 로고
    • Induction of Stress shock proteins DnaK and GroEL by phenoxyherbicide 2,4-D in Burkholderia sp. YK-2 isolated from rice field
    • Cho, Y.-S., S.-H. Park, C.-K. Kim, and K.-H. Oh. 2000. Induction of Stress shock proteins DnaK and GroEL by phenoxyherbicide 2,4-D in Burkholderia sp. YK-2 isolated from rice field. Curr. Microbiol. 41:33-38.
    • (2000) Curr. Microbiol. , vol.41 , pp. 33-38
    • Cho, Y.-S.1    Park, S.-H.2    Kim, C.-K.3    Oh, K.-H.4
  • 9
    • 0036844165 scopus 로고    scopus 로고
    • Genes coding for a new pathway of aerobic benzoate metabolism in Azoarcus evansii
    • Gescher, J., A. Zaar, M. Mohamed, H. Schägger, and G. Fuchs. 2002. Genes coding for a new pathway of aerobic benzoate metabolism in Azoarcus evansii. J. Bacteriol. 184:6301-6315.
    • (2002) J. Bacteriol. , vol.184 , pp. 6301-6315
    • Gescher, J.1    Zaar, A.2    Mohamed, M.3    Schägger, H.4    Fuchs, G.5
  • 11
    • 0032901126 scopus 로고    scopus 로고
    • Recent developments in two-dimensional gel electrophoresis with immobilized pH gradients: Wide pH gradients up to pH 12, longer separation distances and simplified procedures
    • Gorg, A., C. Obermaier, G. Boguth, and W. Weiss. 1999. Recent developments in two-dimensional gel electrophoresis with immobilized pH gradients: wide pH gradients up to pH 12, longer separation distances and simplified procedures. Electrophoresis 20:712-717.
    • (1999) Electrophoresis , vol.20 , pp. 712-717
    • Gorg, A.1    Obermaier, C.2    Boguth, G.3    Weiss, W.4
  • 13
    • 0029795374 scopus 로고    scopus 로고
    • The beta-ketoadipate pathway and the biology of self-identity
    • Harwood, C. S., and R. E. Parales. 1996. The beta-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50:553-590.
    • (1996) Annu. Rev. Microbiol. , vol.50 , pp. 553-590
    • Harwood, C.S.1    Parales, R.E.2
  • 14
    • 0027198281 scopus 로고
    • Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation
    • Hofer, B., L. D. Eltis, D. N. Dowling, and K. N. Timmis. 1993. Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation. Gene 130:47-55.
    • (1993) Gene , vol.130 , pp. 47-55
    • Hofer, B.1    Eltis, L.D.2    Dowling, D.N.3    Timmis, K.N.4
  • 15
    • 0033621330 scopus 로고    scopus 로고
    • Rapid degradation of an abnormal protein in Escherichia coli proceeds through repeated cycles of association with GroEL
    • Kandror, O., M. Sherman, and A. Goldberg. 1999. Rapid degradation of an abnormal protein in Escherichia coli proceeds through repeated cycles of association with GroEL. J. Biol. Chem. 274:37743-37749.
    • (1999) J. Biol. Chem. , vol.274 , pp. 37743-37749
    • Kandror, O.1    Sherman, M.2    Goldberg, A.3
  • 19
    • 0031859738 scopus 로고    scopus 로고
    • Regulation of porin-mediated outer membrane permeability by nutrient limitation in Escherichia coli
    • Liu, X., and T. Ferenci. 1998. Regulation of porin-mediated outer membrane permeability by nutrient limitation in Escherichia coli. J. Bacteriol. 180:3917-3922.
    • (1998) J. Bacteriol. , vol.180 , pp. 3917-3922
    • Liu, X.1    Ferenci, T.2
  • 20
    • 0033926917 scopus 로고    scopus 로고
    • Global adaptations resulting from high population densities in Escherichia coli cultures
    • Liu, X., C. Ng, and T. Ferenci. 2000. Global adaptations resulting from high population densities in Escherichia coli cultures. J. Bacteriol. 182:4158-4164.
    • (2000) J. Bacteriol. , vol.182 , pp. 4158-4164
    • Liu, X.1    Ng, C.2    Ferenci, T.3
  • 21
    • 0346364903 scopus 로고    scopus 로고
    • Compensatory increase in ahpC gene expression and its role in protecting Burkholderia pseudomallei against reactive nitrogen intermediates
    • Loprasert, S., R. Sallabhan, W. Whangsuk, and S. Mongkolsuk. 2003. Compensatory increase in ahpC gene expression and its role in protecting Burkholderia pseudomallei against reactive nitrogen intermediates. Arch. Microbiol. 180:498-502.
    • (2003) Arch. Microbiol. , vol.180 , pp. 498-502
    • Loprasert, S.1    Sallabhan, R.2    Whangsuk, W.3    Mongkolsuk, S.4
  • 22
    • 0033505724 scopus 로고    scopus 로고
    • Degradation of anaerobic reductive dechlorination products of Aroclor 1242 by four aerobic bacteria
    • Maltseva, O. V., T. V. Tsoi, J. F. Quensen Spaceiiiqq, M. Fukuda, and J. M. Tiedje. 1999. Degradation of anaerobic reductive dechlorination products of Aroclor 1242 by four aerobic bacteria. Biodegradation 10:363-371.
    • (1999) Biodegradation , vol.10 , pp. 363-371
    • Maltseva, O.V.1    Tsoi, T.V.2    Quensen Spaceiiiqq, J.F.3    Fukuda, M.4    Tiedje, J.M.5
  • 23
    • 1642310209 scopus 로고    scopus 로고
    • Multiple formaldehyde oxidation/detoxification pathways in Burkholderia fungorum LB400
    • Marx, C. J., J. A. Miller, L. Chistoserdova, and M. E. Lidstrom. 2004. Multiple formaldehyde oxidation/detoxification pathways in Burkholderia fungorum LB400. J. Bacteriol. 186:2173-2178.
    • (2004) J. Bacteriol. , vol.186 , pp. 2173-2178
    • Marx, C.J.1    Miller, J.A.2    Chistoserdova, L.3    Lidstrom, M.E.4
  • 24
    • 0035374518 scopus 로고    scopus 로고
    • Induction of bphA, encoding biphenyl dioxygenase, in two polychlorinated biphenyl-degrading bacteria, psychrotolerant Pseudomonas strain Cam-1 and mesophilic Burkholderia strain LB400
    • Master, E. R., and W. W. Mohn. 2001. Induction of bphA, encoding biphenyl dioxygenase, in two polychlorinated biphenyl-degrading bacteria, psychrotolerant Pseudomonas strain Cam-1 and mesophilic Burkholderia strain LB400. Appl. Environ. Microbiol. 67:2669-2676.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2669-2676
    • Master, E.R.1    Mohn, W.W.2
  • 25
    • 0030462757 scopus 로고    scopus 로고
    • Identification and characterization of HsIV HsIU (ClpQ ClpY) proteins involved in overall proteolysis of misfolded proteins in Escherichia coli
    • Missiakas, D., F. Schwager, J. M. Betton, C. Georgopoulos, and S. Raina. 1996. Identification and characterization of HsIV HsIU (ClpQ ClpY) proteins involved in overall proteolysis of misfolded proteins in Escherichia coli. EMBO J. 15:6899-6909.
    • (1996) EMBO J. , vol.15 , pp. 6899-6909
    • Missiakas, D.1    Schwager, F.2    Betton, J.M.3    Georgopoulos, C.4    Raina, S.5
  • 26
    • 0035101009 scopus 로고    scopus 로고
    • Reinvestigation of a new type of aerobic benzoate metabolism in the proteobacterium Azoarcus evansii
    • Mohamed, M. E., A. Zaar, C. Ebenau-Jehle, and G. Fuchs. 2001. Reinvestigation of a new type of aerobic benzoate metabolism in the proteobacterium Azoarcus evansii. J. Bacteriol. 183:1899-1908.
    • (2001) J. Bacteriol. , vol.183 , pp. 1899-1908
    • Mohamed, M.E.1    Zaar, A.2    Ebenau-Jehle, C.3    Fuchs, G.4
  • 27
    • 0024632140 scopus 로고
    • Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation
    • Mondello, F. J. 1989. Cloning and expression in Escherichia coli of Pseudomonas strain LB400 genes encoding polychlorinated biphenyl degradation. J. Bacteriol. 171:1725-1732.
    • (1989) J. Bacteriol. , vol.171 , pp. 1725-1732
    • Mondello, F.J.1
  • 28
    • 0242523637 scopus 로고    scopus 로고
    • Approaches for the quantification of protein concentration ratios
    • Moritz, B., and H. E. Meyer. 2003. Approaches for the quantification of protein concentration ratios. Proteomics 3:2208-2220.
    • (2003) Proteomics , vol.3 , pp. 2208-2220
    • Moritz, B.1    Meyer, H.E.2
  • 29
    • 0023089394 scopus 로고
    • Benzoate and muconate, structurally dissimilar metabolites, induce expression of catA in Acinetobacter calcoaceucus
    • Neidle, E. L., and L. N. Ornston. 1987. Benzoate and muconate, structurally dissimilar metabolites, induce expression of catA in Acinetobacter calcoaceucus. J. Bacteriol. 169:414-415.
    • (1987) J. Bacteriol. , vol.169 , pp. 414-415
    • Neidle, E.L.1    Ornston, L.N.2
  • 30
    • 20444506446 scopus 로고    scopus 로고
    • Catabolism of benzoate and phthalate in Rhodococcus sp. strain RHA1: Redundancies and convergence
    • Patrauchan, M. A., C. Florizone, M. Dosanjh, W. W. Mohn, J. Davies, and L. D. Eltis. 2005. Catabolism of benzoate and phthalate in Rhodococcus sp. strain RHA1: redundancies and convergence. J. Bacteriol. 187:4050-4063.
    • (2005) J. Bacteriol. , vol.187 , pp. 4050-4063
    • Patrauchan, M.A.1    Florizone, C.2    Dosanjh, M.3    Mohn, W.W.4    Davies, J.5    Eltis, L.D.6
  • 31
    • 0030066091 scopus 로고    scopus 로고
    • Flavin-dependent alkyl hydroperoxide reductase from Salmonella typhimurium. 1. Purification and enzymatic activities of overexpressed AhpF and AhpC proteins
    • Poole, L. B., and H. R. Ellis. 1996. Flavin-dependent alkyl hydroperoxide reductase from Salmonella typhimurium. 1. Purification and enzymatic activities of overexpressed AhpF and AhpC proteins. Biochemistry 35:65-75.
    • (1996) Biochemistry , vol.35 , pp. 65-75
    • Poole, L.B.1    Ellis, H.R.2
  • 32
    • 0025139202 scopus 로고
    • Nucleotide sequencing and characterization of Pseudomonas putida catR: A positive regulator of the catBC operon is a member of the LysR family
    • Rothmel, R. K., T. L. Aldrich, J. E. Houghton, W. M. Coco, L. N. Ornston, and A. M. Chakrabarty. 1990. Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR family. J. Bacteriol. 172:922-931.
    • (1990) J. Bacteriol. , vol.172 , pp. 922-931
    • Rothmel, R.K.1    Aldrich, T.L.2    Houghton, J.E.3    Coco, W.M.4    Ornston, L.N.5    Chakrabarty, A.M.6
  • 33
    • 0036351205 scopus 로고    scopus 로고
    • Diversity of 2,3-dihydroxybiphenyl dioxygenase genes in a strong PCB degrader, Rhodococcus sp strain RHA1
    • Sakai, M., E. Masai, H. Asami, K. Sugiyama, K. Kimbara, and M. Fukuda. 2002. Diversity of 2,3-dihydroxybiphenyl dioxygenase genes in a strong PCB degrader, Rhodococcus sp strain RHA1. J. Biosci. Bioeng. 93:421-427.
    • (2002) J. Biosci. Bioeng. , vol.93 , pp. 421-427
    • Sakai, M.1    Masai, E.2    Asami, H.3    Sugiyama, K.4    Kimbara, K.5    Fukuda, M.6
  • 34
    • 0034717267 scopus 로고    scopus 로고
    • Identification of a serine hydrolase as a key determinant in the microbial degradation of polychlorinated biphenyls
    • Seah, S. Y. K., G. Labbé, S. Nerdinger, M. R. Johnson, V. Snieckus, and L. D. Eltis. 2000. Identification of a serine hydrolase as a key determinant in the microbial degradation of polychlorinated biphenyls. J. Biol. Chem. 275:15701-15708.
    • (2000) J. Biol. Chem. , vol.275 , pp. 15701-15708
    • Seah, S.Y.K.1    Labbé, G.2    Nerdinger, S.3    Johnson, M.R.4    Snieckus, V.5    Eltis, L.D.6
  • 35
    • 0032765989 scopus 로고    scopus 로고
    • Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400
    • Seeger, M., M. Zielinski, K. N. Timmis, and B. Hofer. 1999. Regiospecificity of dioxygenation of di- to pentachlorobiphenyls and their degradation to chlorobenzoates by the bph-encoded catabolic pathway of Burkholderia sp. strain LB400. Appl. Environ. Microbiol. 65:3614-3621.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3614-3621
    • Seeger, M.1    Zielinski, M.2    Timmis, K.N.3    Hofer, B.4
  • 36
    • 10444278093 scopus 로고    scopus 로고
    • Expression of glutathione S-transferase and peptide methionine sulphoxide reductase in Ochrobactrum anthropi is correlated to the production of reactive oxygen species caused by aromatic substrates
    • Tamburro, A., I. Robuffo, H. J. Heipieper, N. Allocati, D. Rotilio, C. Di Ilio, and B. Favaloro. 2004. Expression of glutathione S-transferase and peptide methionine sulphoxide reductase in Ochrobactrum anthropi is correlated to the production of reactive oxygen species caused by aromatic substrates. FEMS Microbiol. Lett. 241:151-156.
    • (2004) FEMS Microbiol. Lett. , vol.241 , pp. 151-156
    • Tamburro, A.1    Robuffo, I.2    Heipieper, H.J.3    Allocati, N.4    Rotilio, D.5    Di Ilio, C.6    Favaloro, B.7
  • 37
    • 0036042189 scopus 로고    scopus 로고
    • Cofactor-dependent pathways of formaldehyde oxidation in methylotrophic bacteria
    • Vorholt, J. A. 2002. Cofactor-dependent pathways of formaldehyde oxidation in methylotrophic bacteria. Arch. Microbiol. 178:239-249.
    • (2002) Arch. Microbiol. , vol.178 , pp. 239-249
    • Vorholt, J.A.1
  • 38
    • 0141794471 scopus 로고    scopus 로고
    • pkn22 (alr2502) encoding a putative Ser/Thr kinase in the cyanobacterium Anabaena sp. PCC 7120 is induced by both iron starvation and oxidative stress and regulates the expression of isiA
    • Xu, W.-L., R. Jeanjean, Y.-D. Liu, and C.-C. Zhang. 2003. pkn22 (alr2502) encoding a putative Ser/Thr kinase in the cyanobacterium Anabaena sp. PCC 7120 is induced by both iron starvation and oxidative stress and regulates the expression of isiA. FEBS Lett. 553:179-882.
    • (2003) FEBS Lett. , vol.553 , pp. 179-882
    • Xu, W.-L.1    Jeanjean, R.2    Liu, Y.-D.3    Zhang, C.-C.4
  • 39
    • 0035816580 scopus 로고    scopus 로고
    • A novel pathway of aerobic benzoate catabolism in the bacteria Azoarcus evansii and Bacillus stearothermophilus
    • Zaar, A., W. Eisenreich, A. Bacher, and G. Fuchs. 2001. A novel pathway of aerobic benzoate catabolism in the bacteria Azoarcus evansii and Bacillus stearothermophilus. J. Biol. Chem. 276:24997-25004.
    • (2001) J. Biol. Chem. , vol.276 , pp. 24997-25004
    • Zaar, A.1    Eisenreich, W.2    Bacher, A.3    Fuchs, G.4
  • 40
    • 4744349525 scopus 로고    scopus 로고
    • New enzymes involved in aerobic benzoate metabolism in Azoarcus evansii
    • Zaar, A., J. Gescher, W. Eisenreich, A. Bacher, and G. Fuchs. 2004. New enzymes involved in aerobic benzoate metabolism in Azoarcus evansii. Mol. Microbiol. 54:223-238.
    • (2004) Mol. Microbiol. , vol.54 , pp. 223-238
    • Zaar, A.1    Gescher, J.2    Eisenreich, W.3    Bacher, A.4    Fuchs, G.5
  • 41
    • 0019495408 scopus 로고
    • Primary steps in metabolism of 4-chlorobenzoate in Arthrobacter globiformis
    • Zaitsev, G. M., and Y. N. Karasevich. 1985. Primary steps in metabolism of 4-chlorobenzoate in Arthrobacter globiformis. Mikrobiologiya 50:423-428.
    • (1985) Mikrobiologiya , vol.50 , pp. 423-428
    • Zaitsev, G.M.1    Karasevich, Y.N.2
  • 42
    • 0038705046 scopus 로고    scopus 로고
    • Promoters and transcripts for genes involved in methanol oxidation in Methylobacterium extorquens AM1
    • Zhang, M., and M. E. Lidstrom. 2003. Promoters and transcripts for genes involved in methanol oxidation in Methylobacterium extorquens AM1. Microbiology 149:1033-1040.
    • (2003) Microbiology , vol.149 , pp. 1033-1040
    • Zhang, M.1    Lidstrom, M.E.2
  • 43
    • 0344393452 scopus 로고    scopus 로고
    • Pinpointing biphenyl dioxygenase residues that are crucial for substrate interaction
    • Zielinski, M., S. Kahl, H. J. Hecht, and B. Hofer. 2003. Pinpointing biphenyl dioxygenase residues that are crucial for substrate interaction. J. Bacteriol. 185:6976-6980.
    • (2003) J. Bacteriol. , vol.185 , pp. 6976-6980
    • Zielinski, M.1    Kahl, S.2    Hecht, H.J.3    Hofer, B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.