-
1
-
-
33847168352
-
Biodegradation of polycyclic aromatic hydrocarbons
-
Cerniglia, C. E. 1992. Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 3:351-368.
-
(1992)
Biodegradation
, vol.3
, pp. 351-368
-
-
Cerniglia, C.E.1
-
2
-
-
0024023560
-
Mineralization of polycyclic aromatic hydrocarbons by a bacterium isolated from sediment below an oil field
-
Heitkamp, M. A., and C. E. Cerniglia. 1988. Mineralization of polycyclic aromatic hydrocarbons by a bacterium isolated from sediment below an oil field. Appl. Environ. Microbiol. 54:1612-1614.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 1612-1614
-
-
Heitkamp, M.A.1
Cerniglia, C.E.2
-
3
-
-
0036866607
-
Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov
-
Khan, A. A., S. J. Kim, D. D. Paine, and C. E. Cerniglia. 2002. Classification of a polycyclic aromatic hydrocarbon-metabolizing bacterium, Mycobacterium sp. strain PYR-1, as Mycobacterium vanbaalenii sp. nov. Int. J. Syst. Evol. Microbiol. 52:1997-2002.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1997-2002
-
-
Khan, A.A.1
Kim, S.J.2
Paine, D.D.3
Cerniglia, C.E.4
-
4
-
-
26244435811
-
Numerical and genetic analysis of polycyclic aromatic hydrocarbon-degrading mycobacteria
-
Kim, Y. H., K. H. Engesser, and C. E. Cerniglia. 2005. Numerical and genetic analysis of polycyclic aromatic hydrocarbon-degrading mycobacteria. Microb. Ecol. 50:110-119.
-
(2005)
Microb. Ecol.
, vol.50
, pp. 110-119
-
-
Kim, Y.H.1
Engesser, K.H.2
Cerniglia, C.E.3
-
5
-
-
52749092752
-
Recent advances in the biodegradation of polycyclic aromatic hydrocarbons by Mycobacterium species
-
In V. Šašek, J. A. Glaser, and P. Baveye (ed.), Kluwer Academic Publishers, Dordrecht, Netherlands
-
Cerniglia, C. E. 2003. Recent advances in the biodegradation of polycyclic aromatic hydrocarbons by Mycobacterium species, p. 51-73. In V. Šašek, J. A. Glaser, and P. Baveye (ed.), The utilization of bioremediation to reduce soil contamination: problems and solutions. Kluwer Academic Publishers, Dordrecht, Netherlands.
-
(2003)
The utilization of bioremediation to reduce soil contamination: Problems and solutions
, pp. 51-73
-
-
Cerniglia, C.E.1
-
6
-
-
0038493555
-
Regioand stereoselective metabolism of 7,12-dimethylbenz[a]anthracene by Mycobacterium vanbaalenii PYR-1
-
Moody, J. D., P. P. Fu, J. P. Freeman, and C. E. Cerniglia. 2003. Regioand stereoselective metabolism of 7,12-dimethylbenz[a]anthracene by Mycobacterium vanbaalenii PYR-1. Appl. Environ. Microbiol. 69: 3924-3931.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3924-3931
-
-
Moody, J.D.1
Fu, P.P.2
Freeman, J.P.3
Cerniglia, C.E.4
-
7
-
-
0347760384
-
Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1
-
Moody, J. D., J. P. Freeman, P. P. Fu, and C. E. Cerniglia. 2004. Degradation of benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1. Appl. Environ. Microbiol. 70:340-345.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 340-345
-
-
Moody, J.D.1
Freeman, J.P.2
Fu, P.P.3
Cerniglia, C.E.4
-
8
-
-
16844377208
-
Degradation of benz[a]anthracene by Mycobacterium vanbaalenii strain PYR-1
-
Moody, J. D., J. P. Freeman, and C. E. Cerniglia. 2005. Degradation of benz[a]anthracene by Mycobacterium vanbaalenii strain PYR-1. Biodegradation 16:513-526.
-
(2005)
Biodegradation
, vol.16
, pp. 513-526
-
-
Moody, J.D.1
Freeman, J.P.2
Cerniglia, C.E.3
-
9
-
-
79952148632
-
Degradation of polycyclic aromatic hydrocarbons by Mycobacterium strains
-
In K. N. Timmis (ed.), Springer, Berlin, Germany
-
Kim, S. J., O. Kweon, and C. E. Cerniglia. 2010. Degradation of polycyclic aromatic hydrocarbons by Mycobacterium strains, p. 1865-1880. In K. N. Timmis (ed.), Handbook of hydrocarbon and lipid microbiology. Springer, Berlin, Germany.
-
(2010)
Handbook of hydrocarbon and lipid microbiology
, pp. 1865-1880
-
-
Kim, S.J.1
Kweon, O.2
Cerniglia, C.E.3
-
10
-
-
79952182860
-
Genomic view of mycobacterial high molecular weight polycyclic aromatic hydrocarbon degradation
-
In K. N. Timmis (ed.), Springer, Berlin, Germany
-
Kweon, O., S. J. Kim, and C. E. Cerniglia. 2010. Genomic view of mycobacterial high molecular weight polycyclic aromatic hydrocarbon degradation, p. 1165-1178. In K. N. Timmis (ed.), Handbook of hydrocarbon and lipid microbiology. Springer, Berlin, Germany.
-
(2010)
Handbook of hydrocarbon and lipid microbiology
, pp. 1165-1178
-
-
Kweon, O.1
Kim, S.J.2
Cerniglia, C.E.3
-
11
-
-
33144467842
-
Molecular cloning and expression of genes encoding a novel dioxygenase involved in lowand high-molecular-weight polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR1
-
Kim, S. J., O. Kweon, J. P. Freeman, R. C. Jones, M. D. Adjei, J. W. Jhoo, R. D. Edmondson, and C. E. Cerniglia. 2006. Molecular cloning and expression of genes encoding a novel dioxygenase involved in lowand high-molecular-weight polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR1. Appl. Environ. Microbiol. 72: 1045-1054.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1045-1054
-
-
Kim, S.J.1
Kweon, O.2
Freeman, J.P.3
Jones, R.C.4
Adjei, M.D.5
Jhoo, J.W.6
Edmondson, R.D.7
Cerniglia, C.E.8
-
12
-
-
33846251226
-
Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology
-
Kim, S. J., O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia. 2007. Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology. J. Bacteriol. 189:464-472.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 464-472
-
-
Kim, S.J.1
Kweon, O.2
Jones, R.C.3
Freeman, J.P.4
Edmondson, R.D.5
Cerniglia, C.E.6
-
13
-
-
34347401651
-
A polyomic approach to elucidate the fluoranthene degradative pathway in Mycobacterium vanbaalenii PYR-1
-
Kweon, O., S. J. Kim, R. C. Jones, J. P. Freeman, M. D. Adjei, R. D. Edmondson, and C. E. Cerniglia. 2007. A polyomic approach to elucidate the fluoranthene degradative pathway in Mycobacterium vanbaalenii PYR-1. J. Bacteriol. 189:4635-4647.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 4635-4647
-
-
Kweon, O.1
Kim, S.J.2
Jones, R.C.3
Freeman, J.P.4
Adjei, M.D.5
Edmondson, R.D.6
Cerniglia, C.E.7
-
14
-
-
52749087095
-
Genomic analysis of polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1
-
Kim, S. J., O. Kweon, R. C. Jones, R. D. Edmondson, and C. E. Cerniglia. 2008. Genomic analysis of polycyclic aromatic hydrocarbon degradation in Mycobacterium vanbaalenii PYR-1. Biodegradation 19: 859-881.
-
(2008)
Biodegradation
, vol.19
, pp. 859-881
-
-
Kim, S.J.1
Kweon, O.2
Jones, R.C.3
Edmondson, R.D.4
Cerniglia, C.E.5
-
15
-
-
0035432965
-
Molecular cloning, nucleotide sequence, and expression of genes encoding a polycyclic aromatic ring dioxygenase from Mycobacterium sp. strain PYR-1
-
Khan, A. A., R. F. Wang, W. W. Cao, D. R. Doerge, D. Wennerstrom, and C. E. Cerniglia. 2001. Molecular cloning, nucleotide sequence, and expression of genes encoding a polycyclic aromatic ring dioxygenase from Mycobacterium sp. strain PYR-1. Appl. Environ. Microbiol. 67: 3577-3585.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 3577-3585
-
-
Khan, A.A.1
Wang, R.F.2
Cao, W.W.3
Doerge, D.R.4
Wennerstrom, D.5
Cerniglia, C.E.6
-
16
-
-
66349136181
-
Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways
-
Kim, S. J., O. Kweon, and C. E. Cerniglia. 2009. Proteomic applications to elucidate bacterial aromatic hydrocarbon metabolic pathways. Curr. Opin. Microbiol. 12:301-309.
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 301-309
-
-
Kim, S.J.1
Kweon, O.2
Cerniglia, C.E.3
-
17
-
-
33847400228
-
Isolation and characterization of a gene cluster involved in PAH degradation in Mycobacterium sp. strain SNP11: Expression in Mycobacterium smegmatis mc2155
-
Pagnout, C., G. Frache, P. Poupin, B. Maunit, J. F. Muller, and J. F. Ferard. 2007. Isolation and characterization of a gene cluster involved in PAH degradation in Mycobacterium sp. strain SNP11: expression in Mycobacterium smegmatis mc2155. Res. Microbiol. 158:175-186.
-
(2007)
Res. Microbiol.
, vol.158
, pp. 175-186
-
-
Pagnout, C.1
Frache, G.2
Poupin, P.3
Maunit, B.4
Muller, J.F.5
Ferard, J.F.6
-
18
-
-
0037701540
-
Identification of pyrene-induced proteins in Mycobacterium sp. strain 6PY1: Evidence for two ring-hydroxylating dioxygenases
-
Krivobok, S., S. Kuony, C. Meyer, M. Louwagie, J. C. Willison, and Y. Jouanneau. 2003. Identification of pyrene-induced proteins in Mycobacterium sp. strain 6PY1: evidence for two ring-hydroxylating dioxygenases. J. Bacteriol. 185:3828-3841.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3828-3841
-
-
Krivobok, S.1
Kuony, S.2
Meyer, C.3
Louwagie, M.4
Willison, J.C.5
Jouanneau, Y.6
-
19
-
-
8744268521
-
Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons
-
Demanèche, S., C. Meyer, J. Micoud, M. Louwagie, J. C. Willison, and Y. Jouanneau. 2004. Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons. Appl. Environ. Microbiol. 70:6714-6725.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 6714-6725
-
-
Demanèche, S.1
Meyer, C.2
Micoud, J.3
Louwagie, M.4
Willison, J.C.5
Jouanneau, Y.6
-
20
-
-
9644286057
-
Isolation and characterization of polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates from soil
-
Miller, C. D., K. Hall, Y. N. Liang, K. Nieman, D. Sorensen, B. Issa, A. J. Anderson, and R. C. Sims. 2004. Isolation and characterization of polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates from soil. Microb. Ecol. 48:230-238.
-
(2004)
Microb. Ecol.
, vol.48
, pp. 230-238
-
-
Miller, C.D.1
Hall, K.2
Liang, Y.N.3
Nieman, K.4
Sorensen, D.5
Issa, B.6
Anderson, A.J.7
Sims, R.C.8
-
21
-
-
2142695718
-
Two distinct gene clusters encode pyrene degradation in Mycobacterium sp. strain S65
-
Sho, M., C. Hamel, and C. W. Greer. 2004. Two distinct gene clusters encode pyrene degradation in Mycobacterium sp. strain S65. FEMS Microbiol. Ecol. 48:209-220.
-
(2004)
FEMS Microbiol. Ecol.
, vol.48
, pp. 209-220
-
-
Sho, M.1
Hamel, C.2
Greer, C.W.3
-
22
-
-
34547674725
-
Comparative quantitative prevalence of mycobacteria and functionally abundant nidA, nahAc, and nagAc dioxygenase genes in coal tar contaminated sediments
-
Debruyn, J. M., C. S. Chewning, and G. S. Sayler. 2007. Comparative quantitative prevalence of mycobacteria and functionally abundant nidA, nahAc, and nagAc dioxygenase genes in coal tar contaminated sediments. Environ. Sci. Technol. 41:5426-5432.
-
(2007)
Environ. Sci. Technol.
, vol.41
, pp. 5426-5432
-
-
Debruyn, J.M.1
Chewning, C.S.2
Sayler, G.S.3
-
23
-
-
42249095068
-
Realtime PCR quantification of PAH-ring hydroxylating dioxygenase (PAHRHDalpha) genes from Gram positive and Gram negative bacteria in soil and sediment samples
-
Cébron, A., M. P. Norini, T. Beguiristain, and C. Leyval. 2008. Realtime PCR quantification of PAH-ring hydroxylating dioxygenase (PAHRHDalpha) genes from Gram positive and Gram negative bacteria in soil and sediment samples. J. Microbiol. Methods 73:148-159.
-
(2008)
J. Microbiol. Methods
, vol.73
, pp. 148-159
-
-
Cébron, A.1
Norini, M.P.2
Beguiristain, T.3
Leyval, C.4
-
24
-
-
0038317584
-
Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils
-
Margesin, R., D. Labbe, F. Schinner, C. W. Greer, and L. G. Whyte. 2003. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine alpine soils. Appl. Environ. Microbiol. 69: 3085-3092.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3085-3092
-
-
Margesin, R.1
Labbe, D.2
Schinner, F.3
Greer, C.W.4
Whyte, L.G.5
-
25
-
-
43149093388
-
A new classification system for bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases
-
Kweon, O., S. J. Kim, S. Baek, J. C. Chae, M. D. Adjei, D. H. Baek, Y. C. Kim, and C. E. Cerniglia. 2008. A new classification system for bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases. BMC Biochem. 9:11.
-
(2008)
BMC Biochem.
, vol.9
, pp. 11
-
-
Kweon, O.1
Kim, S.J.2
Baek, S.3
Chae, J.C.4
Adjei, M.D.5
Baek, D.H.6
Kim, Y.C.7
Cerniglia, C.E.8
-
26
-
-
4143146355
-
Molecular characterization of a phenanthrene degradation pathway in Mycobacterium vanbaalenii PYR1
-
Stingley, R. L., A. A. Khan, and C. E. Cerniglia. 2004. Molecular characterization of a phenanthrene degradation pathway in Mycobacterium vanbaalenii PYR1. Biochem. Biophys. Res. Commun. 322:133-146.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.322
, pp. 133-146
-
-
Stingley, R.L.1
Khan, A.A.2
Cerniglia, C.E.3
-
27
-
-
0034034019
-
A novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: Expression in Escherichia coli
-
Saito, A., T. Iwabuchi, and S. Harayama. 2000. A novel phenanthrene dioxygenase from Nocardioides sp. strain KP7: expression in Escherichia coli. J. Bacteriol. 182:2134-2141.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2134-2141
-
-
Saito, A.1
Iwabuchi, T.2
Harayama, S.3
-
28
-
-
27144495787
-
Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase
-
Gakhar, L., Z. A. Malik, C. C. Allen, D. A. Lipscomb, M. J. Larkin, and S. Ramaswamy. 2005. Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase. J. Bacteriol. 187:7222-7231.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 7222-7231
-
-
Gakhar, L.1
Malik, Z.A.2
Allen, C.C.3
Lipscomb, D.A.4
Larkin, M.J.5
Ramaswamy, S.6
-
29
-
-
0032940805
-
Diverse oxygenations catalyzed by carbazole 1,9a-dioxygenase from Pseudomonas sp. strain CA10
-
Nojiri, H., J. W. Nam, M. Kosaka, K. I. Morii, T. Takemura, K. Furihata, H. Yamane, and T. Omori. 1999. Diverse oxygenations catalyzed by carbazole 1,9a-dioxygenase from Pseudomonas sp. strain CA10. J. Bacteriol. 181:3105-3113.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3105-3113
-
-
Nojiri, H.1
Nam, J.W.2
Kosaka, M.3
Morii, K.I.4
Takemura, T.5
Furihata, K.6
Yamane, H.7
Omori, T.8
-
30
-
-
33749528170
-
Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons
-
Jouanneau, Y., C. Meyer, J. Jakoncic, V. Stojanoff, and J. Gaillard. 2006. Characterization of a naphthalene dioxygenase endowed with an exceptionally broad substrate specificity toward polycyclic aromatic hydrocarbons. Biochemistry 45:12380-12391.
-
(2006)
Biochemistry
, vol.45
, pp. 12380-12391
-
-
Jouanneau, Y.1
Meyer, C.2
Jakoncic, J.3
Stojanoff, V.4
Gaillard, J.5
-
31
-
-
0024295005
-
Benzylic monooxygenation catalyzed by toluene dioxygenase from Pseudomonas putida
-
Wackett, L. P., L. D. Kwart, and D. T. Gibson. 1988. Benzylic monooxygenation catalyzed by toluene dioxygenase from Pseudomonas putida. Biochemistry 27:1360-1367.
-
(1988)
Biochemistry
, vol.27
, pp. 1360-1367
-
-
Wackett, L.P.1
Kwart, L.D.2
Gibson, D.T.3
-
32
-
-
0029090715
-
Stereospecific sulfoxidation by toluene and naphthalene dioxygenases
-
Lee, K., J. M. Brand, and D. T. Gibson. 1995. Stereospecific sulfoxidation by toluene and naphthalene dioxygenases. Biochem. Biophys. Res. Commun. 212:9-15.
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.212
, pp. 9-15
-
-
Lee, K.1
Brand, J.M.2
Gibson, D.T.3
-
33
-
-
33746916823
-
A molecular modeling analysis of polycyclic aromatic hydrocarbon biodegradation by naphthalene dioxygenase
-
Wammer, K. H., and C. A. Peters. 2006. A molecular modeling analysis of polycyclic aromatic hydrocarbon biodegradation by naphthalene dioxygenase. Environ. Toxicol. Chem. 25:912-920.
-
(2006)
Environ. Toxicol. Chem.
, vol.25
, pp. 912-920
-
-
Wammer, K.H.1
Peters, C.A.2
-
34
-
-
33845483902
-
The catalytic pocket of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1
-
Jakoncic, J., Y. Jouanneau, C. Meyer, and V. Stojanoff. 2007. The catalytic pocket of the ring-hydroxylating dioxygenase from Sphingomonas CHY-1. Biochem. Biophys. Res. Commun. 352:861-866.
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.352
, pp. 861-866
-
-
Jakoncic, J.1
Jouanneau, Y.2
Meyer, C.3
Stojanoff, V.4
-
35
-
-
34047222146
-
Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
-
Ferraro, D. J., E. N. Brown, C. L. Yu, R. E. Parales, D. T. Gibson, and S. Ramaswamy. 2007. Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1. BMC Struct. Biol. 7:10.
-
(2007)
BMC Struct. Biol.
, vol.7
, pp. 10
-
-
Ferraro, D.J.1
Brown, E.N.2
Yu, C.L.3
Parales, R.E.4
Gibson, D.T.5
Ramaswamy, S.6
-
37
-
-
0037826062
-
The role of active-site residues in naphthalene dioxygenase
-
Parales, R. E. 2003. The role of active-site residues in naphthalene dioxygenase. J. Ind. Microbiol. Biotechnol. 30:271-278.
-
(2003)
J. Ind. Microbiol. Biotechnol.
, vol.30
, pp. 271-278
-
-
Parales, R.E.1
-
38
-
-
0034051818
-
Substrate specificity of naphthalene dioxygenase: Effect of specific amino acids at the active site of the enzyme
-
Parales, R. E., K. Lee, S. M. Resnick, H. Jiang, D. J. Lessner, and D. T. Gibson. 2000. Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme. J. Bacteriol. 182: 1641-1649.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 1641-1649
-
-
Parales, R.E.1
Lee, K.2
Resnick, S.M.3
Jiang, H.4
Lessner, D.J.5
Gibson, D.T.6
-
39
-
-
0033797753
-
Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: Control by phenylalanine 352 in the alpha subunit
-
Parales, R. E., S. M. Resnick, C. L. Yu, D. R. Boyd, N. D. Sharma, and D. T. Gibson. 2000. Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: control by phenylalanine 352 in the alpha subunit. J. Bacteriol. 182:5495-5504.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5495-5504
-
-
Parales, R.E.1
Resnick, S.M.2
Yu, C.L.3
Boyd, D.R.4
Sharma, N.D.5
Gibson, D.T.6
-
40
-
-
33749347047
-
Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase
-
Ferraro, D. J., A. L. Okerlund, J. C. Mowers, and S. Ramaswamy. 2006. Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase. J. Bacteriol. 188:6986-6994.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 6986-6994
-
-
Ferraro, D.J.1
Okerlund, A.L.2
Mowers, J.C.3
Ramaswamy, S.4
-
41
-
-
4444337310
-
Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1
-
Furusawa, Y., V. Nagarajan, M. Tanokura, E. Masai, M. Fukuda, and T. Senda. 2004 Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1. J. Mol. Biol. 342:1041-1052.
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1041-1052
-
-
Furusawa, Y.1
Nagarajan, V.2
Tanokura, M.3
Masai, E.4
Fukuda, M.5
Senda, T.6
-
42
-
-
0347264753
-
Crystal structure of naphthalene dioxygenase: Side-on binding of dioxygen to iron
-
Karlsson, A., J. V. Parales, R. E. Parales, D. T. Gibson, H. Eklund, and S. Ramaswamy. 2003. Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron. Science 299:1039-1042.
-
(2003)
Science
, vol.299
, pp. 1039-1042
-
-
Karlsson, A.1
Parales, J.V.2
Parales, R.E.3
Gibson, D.T.4
Eklund, H.5
Ramaswamy, S.6
-
43
-
-
0034480510
-
A cluster exposed: Structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins
-
Colbert, C. L., M. M. Couture, L. D. Eltis, and J. T. Bolin. 2000. A cluster exposed: structure of the Rieske ferredoxin from biphenyl dioxygenase and the redox properties of Rieske Fe-S proteins. Structure 8:1267-1278.
-
(2000)
Structure
, vol.8
, pp. 1267-1278
-
-
Colbert, C.L.1
Couture, M.M.2
Eltis, L.D.3
Bolin, J.T.4
-
44
-
-
24944529052
-
Metabolic regio- and stereoselectivity of cytochrome P450 2D6 towards 3,4-methylenedioxy-N-alkylamphetamines: In silico predictions and experimental validation
-
Keizers, P. H., C. de Graaf, F. J. de Kanter, C. Oostenbrink, K. A. Feenstra, J. N. Commandeur, and N. P. Vermeulen. 2005. Metabolic regio- and stereoselectivity of cytochrome P450 2D6 towards 3,4-methylenedioxy-N-alkylamphetamines: in silico predictions and experimental validation. J. Med. Chem. 48:6117-6127.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 6117-6127
-
-
Keizers, P.H.1
de Graaf, C.2
de Kanter, F.J.3
Oostenbrink, C.4
Feenstra, K.A.5
Commandeur, J.N.6
Vermeulen, N.P.7
-
45
-
-
0037058831
-
Role of protein and substrate dynamics in catalysis by Pseudomonas putida cytochrome P450cam
-
Prasad, S., and S. Mitra. 2002. Role of protein and substrate dynamics in catalysis by Pseudomonas putida cytochrome P450cam. Biochemistry 41: 14499-14508.
-
(2002)
Biochemistry
, vol.41
, pp. 14499-14508
-
-
Prasad, S.1
Mitra, S.2
-
46
-
-
0042168976
-
Two polycyclic aromatic hydrocarbon o-quinone reductases from a pyrene-degrading Mycobacterium
-
Kim, Y. H., K. H. Engesser, and C. E. Cerniglia. 2003. Two polycyclic aromatic hydrocarbon o-quinone reductases from a pyrene-degrading Mycobacterium. Arch. Biochem. Biophys. 416:209-217.
-
(2003)
Arch. Biochem. Biophys.
, vol.416
, pp. 209-217
-
-
Kim, Y.H.1
Engesser, K.H.2
Cerniglia, C.E.3
-
47
-
-
0035729093
-
Bacterial degradation of aromatic compounds via angular dioxygenation
-
Nojiri, H., H. Habe, and T. Omori. 2001. Bacterial degradation of aromatic compounds via angular dioxygenation. J. Gen. Appl. Microbiol. 47:279-305.
-
(2001)
J. Gen. Appl. Microbiol.
, vol.47
, pp. 279-305
-
-
Nojiri, H.1
Habe, H.2
Omori, T.3
-
48
-
-
0034084433
-
Bacterial metabolism of fluorene, dibenzofuran, dibenzothiophene, and carbazole
-
Bressler, D. C., and P. M. Fedorak. 2000 Bacterial metabolism of fluorene, dibenzofuran, dibenzothiophene, and carbazole. Can. J. Microbiol. 46:397-409.
-
(2000)
Can. J. Microbiol.
, vol.46
, pp. 397-409
-
-
Bressler, D.C.1
Fedorak, P.M.2
-
49
-
-
0042622380
-
SWISSMODEL: An automated protein homology-modeling server
-
Schwede, T., J. Kopp, N. Guex, and M. C. Peitsch. 2003. SWISSMODEL: an automated protein homology-modeling server. Nucleic Acids Res. 31:3381-3385.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
50
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev, V., A. Sorokine, J. Prilusky, J., E. E. Abola, and M. Edelman. 1999. Automated analysis of interatomic contacts in proteins. Bioinformatics 15:327-332.
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.J.3
Abola, E.E.4
Edelman, M.5
-
51
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
-
Wallace, A. C., R. A. Laskowski, and J. M. Thornton. 1995. LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein Eng. 8:127-134.
-
(1995)
Protein Eng.
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
52
-
-
33747818007
-
CASTp: Computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues
-
Dundas, J., Z. Ouyang, J. Tseng, A. Binkowski, Y. Turpaz, and J. Liang. 2006. CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res. 34:W116-W118.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Dundas, J.1
Ouyang, Z.2
Tseng, J.3
Binkowski, A.4
Turpaz, Y.5
Liang, J.6
-
53
-
-
42449090264
-
PROMALS3D: A tool for multiple protein sequence and structure alignments
-
Pei, J., B. H. Kim, and N. V. Grishin. 2008. PROMALS3D: a tool for multiple protein sequence and structure alignments. Nucleic Acids Res. 36:2295-2300.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2295-2300
-
-
Pei, J.1
Kim, B.H.2
Grishin, N.V.3
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