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Volumn 65, Issue 1, 1999, Pages 80-87

In situ, real-time catabolic gene expression: Extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; COAL TAR; DIGOXIGENIN; GROUND WATER; MESSENGER RNA; NAPHTHALENE; NAPHTHALENE DIOXYGENASE; OXYGENASE; UNCLASSIFIED DRUG;

EID: 0032906465     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.65.1.80-87.1999     Document Type: Article
Times cited : (133)

References (77)
  • 1
    • 0028953835 scopus 로고
    • The evolutionary relationship of biphenyl dioxygenase from gram-positive Rhodococcus globerulus P6 to multicomponent dioxygenases from gram-negative bacteria
    • Asturias, J. A., E. Diaz, and K. N. Timmis. 1995. The evolutionary relationship of biphenyl dioxygenase from gram-positive Rhodococcus globerulus P6 to multicomponent dioxygenases from gram-negative bacteria. Gene 156:11-18.
    • (1995) Gene , vol.156 , pp. 11-18
    • Asturias, J.A.1    Diaz, E.2    Timmis, K.N.3
  • 2
    • 0031024020 scopus 로고    scopus 로고
    • Anaerobic activation of toluene and o-xylene by addition to fumarate in denitrifying strain T
    • Beller, H. R., and A. M. Spormann. 1997. Anaerobic activation of toluene and o-xylene by addition to fumarate in denitrifying strain T. J. Bacteriol. 179:670-676.
    • (1997) J. Bacteriol. , vol.179 , pp. 670-676
    • Beller, H.R.1    Spormann, A.M.2
  • 4
    • 0003272157 scopus 로고
    • Enzymatic amplification of RNA by PCR
    • F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.). Greene Publishing Associates and John Wiley & Sons, New York, N.Y.
    • Beverley, S. M. 1992. Enzymatic amplification of RNA by PCR, p. 15.13-15.14. In F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Short protocols in molecular biology. Greene Publishing Associates and John Wiley & Sons, New York, N.Y.
    • (1992) Short Protocols in Molecular Biology , pp. 1513-1514
    • Beverley, S.M.1
  • 6
    • 33847168352 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • Cerniglia, C. E. 1992. Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 3:351-368.
    • (1992) Biodegradation , vol.3 , pp. 351-368
    • Cerniglia, C.E.1
  • 7
    • 0026654006 scopus 로고
    • Solubilization in formamide protects RNA from degradation
    • Chomczynski, P. 1992. Solubilization in formamide protects RNA from degradation. Nucleic Acids Res. 20:3791-3792.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 3791-3792
    • Chomczynski, P.1
  • 8
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski, P., and N. Sacchi. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:155-159.
    • (1987) Anal. Biochem. , vol.162 , pp. 155-159
    • Chomczynski, P.1    Sacchi, N.2
  • 9
    • 0027386075 scopus 로고
    • Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: Complete DNA sequence of an upper naphthalene catabolic pathway
    • Denome, S. A., D. C. Stanley, E. S. Olson, and K. D. Young. 1993. Metabolism of dibenzothiophene and naphthalene in Pseudomonas strains: complete DNA sequence of an upper naphthalene catabolic pathway. J. Bacteriol. 175:6890-6901.
    • (1993) J. Bacteriol. , vol.175 , pp. 6890-6901
    • Denome, S.A.1    Stanley, D.C.2    Olson, E.S.3    Young, K.D.4
  • 10
    • 0026766452 scopus 로고
    • Nucleotide sequencing and transcriptional mapping of genes encoding biphenyl dioxygenase, a multicomponent PCB-degrading enzyme in Pseudomonas strain LB400
    • Erickson, B. D., and F. J. Mondello. 1992. Nucleotide sequencing and transcriptional mapping of genes encoding biphenyl dioxygenase, a multicomponent PCB-degrading enzyme in Pseudomonas strain LB400. J. Bacteriol. 174: 2903-2912.
    • (1992) J. Bacteriol. , vol.174 , pp. 2903-2912
    • Erickson, B.D.1    Mondello, F.J.2
  • 11
    • 0027231336 scopus 로고
    • Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites
    • Fleming, J. T., J. Sanseverino, and G. S. Sayler. 1993. Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites. Environ. Sci. Technol. 27:1068-1074.
    • (1993) Environ. Sci. Technol. , vol.27 , pp. 1068-1074
    • Fleming, J.T.1    Sanseverino, J.2    Sayler, G.S.3
  • 13
    • 0031967070 scopus 로고    scopus 로고
    • A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2
    • Fuenmayor, S. L., M. Wild, A. L. Boyes, and P. A. Williams. 1998. A gene cluster encoding steps in conversion of naphthalene to gentisate in Pseudomonas sp. strain U2. J. Bacteriol. 180:2522-2530.
    • (1998) J. Bacteriol. , vol.180 , pp. 2522-2530
    • Fuenmayor, S.L.1    Wild, M.2    Boyes, A.L.3    Williams, P.A.4
  • 14
    • 0027223958 scopus 로고
    • Gene components responsible for discrete substrate specificity in the metabolism of biphenyl (bph operon) and toluene (tod operon)
    • Furukawa, K., J. Hirose, A. Suyama, T. Zaiki, and S. Hayashida. 1993. Gene components responsible for discrete substrate specificity in the metabolism of biphenyl (bph operon) and toluene (tod operon). J. Bacteriol. 175:5224-5232.
    • (1993) J. Bacteriol. , vol.175 , pp. 5224-5232
    • Furukawa, K.1    Hirose, J.2    Suyama, A.3    Zaiki, T.4    Hayashida, S.5
  • 15
    • 0031437067 scopus 로고    scopus 로고
    • Genetics of naphthalene and phenanthrene degradation by Comomonas testosteroni
    • Goyal, A. K., and G. J. Zylstra. 1997. Genetics of naphthalene and phenanthrene degradation by Comomonas testosteroni. J. Ind. Microbiol. Biotechnol. 19:401-407.
    • (1997) J. Ind. Microbiol. Biotechnol. , vol.19 , pp. 401-407
    • Goyal, A.K.1    Zylstra, G.J.2
  • 16
    • 0030043375 scopus 로고    scopus 로고
    • Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comomonas testosteroni GZ39
    • Goyal, A. K., and G. J. Zylstra. 1996. Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comomonas testosteroni GZ39. Appl. Environ. Microbiol. 62:230-236.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 230-236
    • Goyal, A.K.1    Zylstra, G.J.2
  • 17
    • 0029660135 scopus 로고    scopus 로고
    • Phylogenetic analysis of the bacterial communities in marine sediments
    • Gray, J. P., and R. P. Herwig. 1996. Phylogenetic analysis of the bacterial communities in marine sediments. Appl. Environ. Microbiol. 62:4049-4059.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4049-4059
    • Gray, J.P.1    Herwig, R.P.2
  • 18
    • 0028805170 scopus 로고
    • Maintenance and induction of naphthalene degradation activity in Pseudomonas putida and an Alcaligenes sp. under different culture conditions
    • Guerin, W. F., and S. A. Boyd. 1995. Maintenance and induction of naphthalene degradation activity in Pseudomonas putida and an Alcaligenes sp. under different culture conditions. Appl. Environ. Microbiol. 61:4061-4068.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4061-4068
    • Guerin, W.F.1    Boyd, S.A.2
  • 19
    • 0026805891 scopus 로고
    • Functional and evolutionary relationships among diverse oxygenases
    • Harayama, S., M. Kok, and E. L. Neidle. 1992 Functional and evolutionary relationships among diverse oxygenases. Annu. Rev. Microbiol. 46:565-601.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 565-601
    • Harayama, S.1    Kok, M.2    Neidle, E.L.3
  • 20
    • 0025787605 scopus 로고
    • Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWWO plasmid xylXYZ, genes encoding benzoate dioxygenases
    • Harayama, S., M. Rekik, A. Bairoch, E. L. A. Neidle, and L. N. Ornston. 1991. Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWWO plasmid xylXYZ, genes encoding benzoate dioxygenases. J. Bacteriol. 173:7540-7548.
    • (1991) J. Bacteriol. , vol.173 , pp. 7540-7548
    • Harayama, S.1    Rekik, M.2    Bairoch, A.3    Neidle, E.L.A.4    Ornston, L.N.5
  • 21
    • 0344087538 scopus 로고
    • Ph.D. thesis. Cornell University, Ithaca, N.Y.
    • Herrick, J. B. 1995. Ph.D. thesis. Cornell University, Ithaca, N.Y.
    • (1995)
    • Herrick, J.B.1
  • 22
    • 0027502979 scopus 로고
    • Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria
    • Herrick, J. B., E. L. Madsen, C. A. Batt, and W. C. Ghiorse. 1993. Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria. Appl. Environ. Microbiol. 59:687-594.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 687-1594
    • Herrick, J.B.1    Madsen, E.L.2    Batt, C.A.3    Ghiorse, W.C.4
  • 23
    • 0030977550 scopus 로고    scopus 로고
    • Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site
    • Herrick, J. B., K. G. Stuart-Keil, W. C. Ghiorse, and E. L. Madsen. 1997. Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site. Appl. Environ. Microbiol. 63:2330-2337.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2330-2337
    • Herrick, J.B.1    Stuart-Keil, K.G.2    Ghiorse, W.C.3    Madsen, E.L.4
  • 24
    • 0028862922 scopus 로고
    • In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities
    • Hodson, R. E., W. A. Dustman, R. P. Garg, and M. A. Moran. 1995. In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities. Appl. Environ. Microbiol. 61:4074-4082.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4074-4082
    • Hodson, R.E.1    Dustman, W.A.2    Garg, R.P.3    Moran, M.A.4
  • 25
    • 0030470591 scopus 로고    scopus 로고
    • Detection of the merA gene and its expression in the environment
    • Jeffrey, W. H., S. Nazaret, and T. Barkay. 1996. Detection of the merA gene and its expression in the environment. Microb. Ecol. 32:293-303.
    • (1996) Microb. Ecol. , vol.32 , pp. 293-303
    • Jeffrey, W.H.1    Nazaret, S.2    Barkay, T.3
  • 26
    • 0028361676 scopus 로고
    • Improved method for recovery of mRNA from aquatic samples and its application to detection of mer expression
    • Jeffrey, W. H., S. Nazarel, and R. Von Haven. 1994. Improved method for recovery of mRNA from aquatic samples and its application to detection of mer expression. Appl. Environ. Microbiol. 60:1814-1821.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1814-1821
    • Jeffrey, W.H.1    Nazarel, S.2    Von Haven, R.3
  • 27
    • 0024562664 scopus 로고
    • Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102
    • Kimbara, K., T. Hashimoto, M. Fukuda, T. Koana, M. Takagi, M. A. Oishi, and K. Yano. 1989. Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102. J. Bacteriol. 171:2740-2747.
    • (1989) J. Bacteriol. , vol.171 , pp. 2740-2747
    • Kimbara, K.1    Hashimoto, T.2    Fukuda, M.3    Koana, T.4    Takagi, M.5    Oishi, M.A.6    Yano, K.7
  • 28
    • 0030297926 scopus 로고    scopus 로고
    • Diel variability in transcription of the structural gene for glutamine synthelase (glnA) in natural populations of the marine diazotrophic cyanobacterium Trichodesmium thiebautii
    • Kramer, J. G., M. Wyman, J. P. Zehr, and D. G. Capone. 1996. Diel variability in transcription of the structural gene for glutamine synthelase (glnA) in natural populations of the marine diazotrophic cyanobacterium Trichodesmium thiebautii. FEMS Microbiol. Ecol. 21:187-196.
    • (1996) FEMS Microbiol. Ecol. , vol.21 , pp. 187-196
    • Kramer, J.G.1    Wyman, M.2    Zehr, J.P.3    Capone, D.G.4
  • 29
    • 0024262983 scopus 로고
    • Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas, putida strain NCIB9816
    • Kurkela, S., H. Lehvaeslaiho, E. T. Palva, and T. H. Teeri. 1988. Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas, putida strain NCIB9816. Gene 73:355-362.
    • (1988) Gene , vol.73 , pp. 355-362
    • Kurkela, S.1    Lehvaeslaiho, H.2    Palva, E.T.3    Teeri, T.H.4
  • 30
    • 0001069722 scopus 로고    scopus 로고
    • A critical analysis of methods for determining the composition and biogeochemical activities of soil microbial communities in situ
    • G. Stotzky and J. M. Bollag (ed.). Marcel Dekker, Inc., New York, N.Y.
    • Madsen, E. L. 1996. A critical analysis of methods for determining the composition and biogeochemical activities of soil microbial communities in situ, p. 287-370. In G. Stotzky and J. M. Bollag (ed.), Soil biochemistry, vol. 9. Marcel Dekker, Inc., New York, N.Y.
    • (1996) Soil Biochemistry , vol.9 , pp. 287-370
    • Madsen, E.L.1
  • 31
    • 0032520035 scopus 로고    scopus 로고
    • Epistemology of environmental microbiology
    • Madsen, E. L. 1998. Epistemology of environmental microbiology. Environ. Sci. Technol. 32:429-439.
    • (1998) Environ. Sci. Technol. , vol.32 , pp. 429-439
    • Madsen, E.L.1
  • 32
    • 0003443868 scopus 로고    scopus 로고
    • Methods for determining biodegradability
    • C. J. Hurst, G. R. Knudsen, M. J. McInerney, L. D. Stetzenbach, and M. V. Walter (ed.). American Society for Microbiology, Washington, D.C.
    • Madsen, E. L. 1997. Methods for determining biodegradability, p. 709-720. In C. J. Hurst, G. R. Knudsen, M. J. McInerney, L. D. Stetzenbach, and M. V. Walter (ed.), Manual of environmental microbiology. American Society for Microbiology, Washington, D.C.
    • (1997) Manual of Environmental Microbiology , pp. 709-720
    • Madsen, E.L.1
  • 33
    • 0028947497 scopus 로고
    • 14C-based field method for assessing potential biodegradation of organic compounds in soil and sediment samples
    • 14C-based field method for assessing potential biodegradation of organic compounds in soil and sediment samples. J. Microbiol. Methods 21: 317-327.
    • (1995) J. Microbiol. Methods , vol.21 , pp. 317-327
    • Madsen, E.L.1    Bilotta-Best, S.E.2    Ghiorse, W.C.3
  • 34
    • 0029852588 scopus 로고    scopus 로고
    • Oxygen limitations and aging as explanations for the field persistence of naphthalene in coal tarcontaminated surface sediments
    • Madsen, E. L., C. L. Mann, and S. E. Bilotta. 1996. Oxygen limitations and aging as explanations for the field persistence of naphthalene in coal tarcontaminated surface sediments. Environ. Toxicol. Chem. 15:1876-1882.
    • (1996) Environ. Toxicol. Chem. , vol.15 , pp. 1876-1882
    • Madsen, E.L.1    Mann, C.L.2    Bilotta, S.E.3
  • 35
    • 0025918927 scopus 로고
    • In situ biodegradation: Microbiological patterns in a contaminated aquifer
    • Madsen, E. L., J. L. Sinclair, and W. C. Ghiorse. 1991. In situ biodegradation: microbiological patterns in a contaminated aquifer. Science 252:830-833.
    • (1991) Science , vol.252 , pp. 830-833
    • Madsen, E.L.1    Sinclair, J.L.2    Ghiorse, W.C.3
  • 36
    • 0030200696 scopus 로고    scopus 로고
    • In situ dynamics of aromatic hydrocarbons (AHs) and bacteria capable of AH metabolism in a coal tar waste-contaminated field site
    • Madsen, E. L., C. T. Thomas, M. S. Wilson, R. L. Sandoli, and S. E. Bilotta. 1996. In situ dynamics of aromatic hydrocarbons (AHs) and bacteria capable of AH metabolism in a coal tar waste-contaminated field site. Environ. Sci. Technol. 30:2412-2416.
    • (1996) Environ. Sci. Technol. , vol.30 , pp. 2412-2416
    • Madsen, E.L.1    Thomas, C.T.2    Wilson, M.S.3    Sandoli, R.L.4    Bilotta, S.E.5
  • 37
    • 0029059059 scopus 로고
    • Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1
    • Masai, E., A. Yamada, J. M. Healy, T. Hatta, K. Kimbara, M. Fukuda, and K. Yano. 1995. Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1. Appl. Environ. Microbiol. 61:2079-2085.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2079-2085
    • Masai, E.1    Yamada, A.2    Healy, J.M.3    Hatta, T.4    Kimbara, K.5    Fukuda, M.6    Yano, K.7
  • 38
    • 0026743341 scopus 로고
    • The electron-transport proteins of hydroxylating bacterial dioxygenases
    • Mason, J. R., and R. Cammack. 1992. The electron-transport proteins of hydroxylating bacterial dioxygenases. Annu. Rev. Microbiol. 46:277-305.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 277-305
    • Mason, J.R.1    Cammack, R.2
  • 39
    • 0021431375 scopus 로고
    • Hybridization of nucleic acids immobilized on solid supports
    • Meinkoth, J., and G. Wahl. 1984. Hybridization of nucleic acids immobilized on solid supports. Anal. Biochem. 138:267-272.
    • (1984) Anal. Biochem. , vol.138 , pp. 267-272
    • Meinkoth, J.1    Wahl, G.2
  • 40
    • 0028269319 scopus 로고
    • Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment
    • More, M. I., J. B. Herrick, M. C. Silva, W. C. Ghiorse, and E. L. Madsen. 1994. Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment. Appl. Environ. Microbiol. 60:1572-1580.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1572-1580
    • More, M.I.1    Herrick, J.B.2    Silva, M.C.3    Ghiorse, W.C.4    Madsen, E.L.5
  • 42
    • 0003597396 scopus 로고
    • National Academy Press, Washington, D.C.
    • National Research Council. 1993. In situ bioremediation: when does it work? National Academy Press, Washington, D.C.
    • (1993) In Situ Bioremediation: When Does It Work?
  • 43
    • 0028116029 scopus 로고
    • merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization
    • Nazaret, S., W. H. Jeffrey, E. Saouter, R. Von Haven, and T. Barkay. 1994. merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization. Appl. Environ. Microbiol. 60:4059-4065.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 4059-4065
    • Nazaret, S.1    Jeffrey, W.H.2    Saouter, E.3    Von Haven, R.4    Barkay, T.5
  • 44
    • 0026017943 scopus 로고
    • Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases
    • Neidle, E. L., C. Hartnett, L. N. Ornston, A. Bairoch, M. Rekik, and S. Harayama. 1991. Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases. J. Bacteriol. 173:5385-5395.
    • (1991) J. Bacteriol. , vol.173 , pp. 5385-5395
    • Neidle, E.L.1    Hartnett, C.2    Ornston, L.N.3    Bairoch, A.4    Rekik, M.5    Harayama, S.6
  • 45
    • 0028851170 scopus 로고
    • Isolation and characterization of RNA from low-biomass deep-subsurface sediments
    • Ogram, A., W. Sun, F. J. Brockman, and J. K. Fredrickson. 1995. Isolation and characterization of RNA from low-biomass deep-subsurface sediments. Appl. Environ. Microbiol. 61:763-768.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 763-768
    • Ogram, A.1    Sun, W.2    Brockman, F.J.3    Fredrickson, J.K.4
  • 46
    • 0344499798 scopus 로고    scopus 로고
    • Cloning and sequencing of the genes encoding 2-nitrotoluene dioxygenase from Pseudomonas sp. JS42
    • Parales, J. V., A. Kumar, R. E. Parales, and D. T. Gibson. 1996. Cloning and sequencing of the genes encoding 2-nitrotoluene dioxygenase from Pseudomonas sp. JS42. Gene 181:57-61.
    • (1996) Gene , vol.181 , pp. 57-61
    • Parales, J.V.1    Kumar, A.2    Parales, R.E.3    Gibson, D.T.4
  • 47
    • 0031958521 scopus 로고    scopus 로고
    • Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems
    • Parales, R. E., M. D. Emig, N. A. Lynch, and D. T. Gibson. 1998. Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems. J. Bacteriol. 180:2337-2344.
    • (1998) J. Bacteriol. , vol.180 , pp. 2337-2344
    • Parales, R.E.1    Emig, M.D.2    Lynch, N.A.3    Gibson, D.T.4
  • 48
    • 0030303616 scopus 로고    scopus 로고
    • Carbon cycling: Molecular regulation of photosynthetic carbon fixation
    • Paul, J. H. 1996. Carbon cycling: molecular regulation of photosynthetic carbon fixation. Microb. Ecol. 32:231-245.
    • (1996) Microb. Ecol. , vol.32 , pp. 231-245
    • Paul, J.H.1
  • 49
    • 0029803394 scopus 로고    scopus 로고
    • Regulation of ribulose bisphosphate carboxylase gene expression in natural phytoplankton communities. I. Diel rhythms
    • Pichard, S. L., L. Campbell, J. B. Kang, F. R. Tabita, and J. H. Paul. 1996. Regulation of ribulose bisphosphate carboxylase gene expression in natural phytoplankton communities. I. Diel rhythms. Mar. Ecol. Prog. Ser. 139:257-265.
    • (1996) Mar. Ecol. Prog. Ser. , vol.139 , pp. 257-265
    • Pichard, S.L.1    Campbell, L.2    Kang, J.B.3    Tabita, F.R.4    Paul, J.H.5
  • 50
    • 0027144184 scopus 로고
    • Ribulose bisphosphate carboxylase gene expression in subtropical marine phytoplankton populations
    • Picbard, S. L., M. E. Frischer, and J. H. Paul. 1993. Ribulose bisphosphate carboxylase gene expression in subtropical marine phytoplankton populations. Mar. Ecol. Prog. Ser. 101:55-6.5.
    • (1993) Mar. Ecol. Prog. Ser. , vol.101 , pp. 55-65
    • Picbard, S.L.1    Frischer, M.E.2    Paul, J.H.3
  • 51
    • 0025919297 scopus 로고
    • Detection of gene expression in genetically engineered microorganisms and natural phytoplankton populations in the marine environment by mRNA analysis
    • Pichard, S. L., and J. H. Paul. 1991. Detection of gene expression in genetically engineered microorganisms and natural phytoplankton populations in the marine environment by mRNA analysis. Appl. Environ. Microbiol. 57: 1721-1727.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1721-1727
    • Pichard, S.L.1    Paul, J.H.2
  • 52
    • 0027511613 scopus 로고
    • Gene expression per gene dose, a specific measure of gene expression in aquatic microorganisms
    • Pichard, S. L., and J. H. Paul. 1993. Gene expression per gene dose, a specific measure of gene expression in aquatic microorganisms. Appl. Environ. Microbiol. 59:451-457.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 451-457
    • Pichard, S.L.1    Paul, J.H.2
  • 53
    • 0003030832 scopus 로고
    • Optimization and troubleshooting in PCR
    • C. W. Dieffenbach and G. S. Dveksler (ed.). Cold Spring Harbor Laboratory Press, Plainview, N.Y.
    • Roux, K. H. 1995. Optimization and troubleshooting in PCR, p. 53-62. In C. W. Dieffenbach and G. S. Dveksler (ed.), PCR primer: a laboratory manual. Cold Spring Harbor Laboratory Press, Plainview, N.Y.
    • (1995) PCR Primer: A Laboratory Manual , pp. 53-62
    • Roux, K.H.1
  • 55
    • 0029808454 scopus 로고    scopus 로고
    • Regulation of microbial phenanthrene mineralization in sediment samples by sorbent-sorbate contact time, inocula and gamma irradiation-induced sterilization artifacts
    • Sandoli, R. L., W. C. Ghiorse, and E. L. Madsen. 1996. Regulation of microbial phenanthrene mineralization in sediment samples by sorbent-sorbate contact time, inocula and gamma irradiation-induced sterilization artifacts. Environ. Toxicol. Chem. 15:1901-1907.
    • (1996) Environ. Toxicol. Chem. , vol.15 , pp. 1901-1907
    • Sandoli, R.L.1    Ghiorse, W.C.2    Madsen, E.L.3
  • 56
    • 0027133938 scopus 로고
    • Molecular diagnostics of polyaromatic hydrocarbon biodegradation in manufactured gas plant soils
    • Sanseverino, J., C. Werner, J. Fleming, B. Applegate, J. M. H. King, and G. S. Sayler. 1993. Molecular diagnostics of polyaromatic hydrocarbon biodegradation in manufactured gas plant soils. Biodegradation 4:303-321.
    • (1993) Biodegradation , vol.4 , pp. 303-321
    • Sanseverino, J.1    Werner, C.2    Fleming, J.3    Applegate, B.4    King, J.M.H.5    Sayler, G.S.6
  • 58
    • 0032444305 scopus 로고    scopus 로고
    • The double helix meets the crystal lattice: The power and pitfalls of nucleic acid approaches for biomineralogical investigations
    • Siering, P. L. 1998. The double helix meets the crystal lattice: the power and pitfalls of nucleic acid approaches for biomineralogical investigations. Am. Mineral. 83:1593-1607.
    • (1998) Am. Mineral. , vol.83 , pp. 1593-1607
    • Siering, P.L.1
  • 59
    • 0030901218 scopus 로고    scopus 로고
    • Development and application of 16s rRNA-targeled probes for detection of iron -and manganese-oxidizing sheathed bacteria in environmental samples
    • Siering, P. L., and W. C. Ghiorse. 1997. Development and application of 16S rRNA-targeled probes for detection of iron -and manganese-oxidizing sheathed bacteria in environmental samples. Appl. Environ. Microbiol. 63: 644-651.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 644-651
    • Siering, P.L.1    Ghiorse, W.C.2
  • 61
    • 0031710278 scopus 로고    scopus 로고
    • Plasmids responsible for horizontal transfer of naphthalene catabolic genes between bacteria at a coal tar-contaminated site are homologous to pDTG1 from Pseudomonas putida 9816-4
    • Stuart-Keil, K. G., A. M. Hohnstock, K. P. Drees, J. B. Herrick, and E. L. Madsen. 1998. Plasmids responsible for horizontal transfer of naphthalene catabolic genes between bacteria at a coal tar-contaminated site are homologous to pDTG1 from Pseudomonas putida 9816-4. Appl. Environ. Microbiol. 64:3633-3640.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3633-3640
    • Stuart-Keil, K.G.1    Hohnstock, A.M.2    Drees, K.P.3    Herrick, J.B.4    Madsen, E.L.5
  • 62
    • 0029779548 scopus 로고    scopus 로고
    • 2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: Similarity to naphthalene dioxygenase
    • Suen, W. C., B. E. Haigler, and J. C. Spain. 1996. 2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase. J. Bacteriol. 178:4926-4934.
    • (1996) J. Bacteriol. , vol.178 , pp. 4926-4934
    • Suen, W.C.1    Haigler, B.E.2    Spain, J.C.3
  • 64
    • 0026640186 scopus 로고
    • Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707
    • Taira, K., J. Hirose, S. A. Hayashida, and K. Furukawa. 1992. Analysis of bph operon from the polychlorinated biphenyl-degrading strain of Pseudomonas pseudoalcaligenes KF707. J. Biol. Chem. 267:4844-4853.
    • (1992) J. Biol. Chem. , vol.267 , pp. 4844-4853
    • Taira, K.1    Hirose, J.2    Hayashida, S.A.3    Furukawa, K.4
  • 65
    • 0028280923 scopus 로고
    • Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82
    • Takizawa, N., N. Kaida, S. Torigoe, T. Moritani, T. Sawada, S. Satoh, and H. Kiyohara. 1994. Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82. J. Bacteriol. 176:2444-2449.
    • (1994) J. Bacteriol. , vol.176 , pp. 2444-2449
    • Takizawa, N.1    Kaida, N.2    Torigoe, S.3    Moritani, T.4    Sawada, T.5    Satoh, S.6    Kiyohara, H.7
  • 66
    • 0027203859 scopus 로고
    • The Pseudomonas putida ML2 plasmid-encoded genes for benzene dioxygenase are unusual in codon usage and low in G+C content
    • Tan, H., H. Tang, C. Joannou, N. Abdel-Wahab, and J. Mason. 1993. The Pseudomonas putida ML2 plasmid-encoded genes for benzene dioxygenase are unusual in codon usage and low in G+C content. Gene 130:33-39.
    • (1993) Gene , vol.130 , pp. 33-39
    • Tan, H.1    Tang, H.2    Joannou, C.3    Abdel-Wahab, N.4    Mason, J.5
  • 67
    • 0025893814 scopus 로고
    • Rapid method for direct extraction of mRNA from seeded soils
    • Tsai, Y.-L., M. J. Park, and B. H. Olson. 1991. Rapid method for direct extraction of mRNA from seeded soils. Appl. Environ. Microbiol. 57:765-768.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 765-768
    • Tsai, Y.-L.1    Park, M.J.2    Olson, B.H.3
  • 68
    • 0025719238 scopus 로고
    • Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain p51
    • van der Meer, J. R., A. J. Zehnder, and W. M. de Vos. 1991. Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain p51. J. Bacteriol. 173:7077-7083.
    • (1991) J. Bacteriol. , vol.173 , pp. 7077-7083
    • Van Der Meer, J.R.1    Zehnder, A.J.2    De Vos, W.M.3
  • 69
    • 0028971916 scopus 로고
    • Sequence and expression of the bpdC1C2BADE genes involved in the initial steps of biphenyl/chlorobiphenyl degradation by Rhodococcus sp. M5
    • Wang, Y., J. Garnon, U. Labbe, H. Bergeron, and P. C. K. Lau. 1995. Sequence and expression of the bpdC1C2BADE genes involved in the initial steps of biphenyl/chlorobiphenyl degradation by Rhodococcus sp. M5. Gene 164:117-122.
    • (1995) Gene , vol.164 , pp. 117-122
    • Wang, Y.1    Garnon, J.2    Labbe, U.3    Bergeron, H.4    Lau, P.C.K.5
  • 70
    • 0028672045 scopus 로고
    • The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas
    • Williams, P. A., and J. R. Sayers. 1994. The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas. Biodegradation 5:195-217.
    • (1994) Biodegradation , vol.5 , pp. 195-217
    • Williams, P.A.1    Sayers, J.R.2
  • 71
    • 0029891118 scopus 로고    scopus 로고
    • Field extraction of a transient intermediary metabolite indicative of real time in situ naphthalene biodegradation
    • Wilson, M. S., and E. L. Madsen. 1996. Field extraction of a transient intermediary metabolite indicative of real time in situ naphthalene biodegradation. Environ. Sci. Technol. 30:2099-2103.
    • (1996) Environ. Sci. Technol. , vol.30 , pp. 2099-2103
    • Wilson, M.S.1    Madsen, E.L.2
  • 72
    • 0030026825 scopus 로고    scopus 로고
    • Temporal variability in nitrogenase gene expression in natural populations of the marine cyanobacterium Trichodesmium thiebautii
    • Wyman, M., J. P. Zehr, and D. G. Capone. 1996. Temporal variability in nitrogenase gene expression in natural populations of the marine cyanobacterium Trichodesmium thiebautii. Appl. Environ. Microbiol. 62:1073-1075.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1073-1075
    • Wyman, M.1    Zehr, J.P.2    Capone, D.G.3
  • 73
    • 0030008621 scopus 로고    scopus 로고
    • Ribulose-1,5-bisphosphate carboxylase/ oxygenase gene expression and diversity of Lake Erie planktonic microorganisms
    • Xu, H. H., and F. R. Tabita. 1996. Ribulose-1,5-bisphosphate carboxylase/ oxygenase gene expression and diversity of Lake Erie planktonic microorganisms. Appl. Environ. Microbiol. 62:1913-1921.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1913-1921
    • Xu, H.H.1    Tabita, F.R.2
  • 74
    • 0023705037 scopus 로고
    • Genetics of naphthalene catabolism in psuedomonads
    • Yen, K.-M., and C. M. Serdar. 1988. Genetics of naphthalene catabolism in psuedomonads. Crit. Rev. Microbiol. 15:247-268.
    • (1988) Crit. Rev. Microbiol. , vol.15 , pp. 247-268
    • Yen, K.-M.1    Serdar, C.M.2
  • 75
    • 0027416528 scopus 로고
    • Modification of the Fe protein of nitrogenase in natural populations of Trichodesmium thiebautii
    • Zehr, J. P., M. Wyman, V. Miller, L. Duguay, and D. G. Capone. 1993. Modification of the Fe protein of nitrogenase in natural populations of Trichodesmium thiebautii. Appl. Environ. Microbiol. 59:669-676.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 669-676
    • Zehr, J.P.1    Wyman, M.2    Miller, V.3    Duguay, L.4    Capone, D.G.5
  • 76
    • 0024427069 scopus 로고
    • Toluene degradation by Pseudomonas putida F1: Nucleotide sequence of the todC1C2BADE genes and their expression in E. Coli
    • Zvlstra, G. J., and D. T. Gibson. 1989. Toluene degradation by Pseudomonas putida F1: nucleotide sequence of the todC1C2BADE genes and their expression in E. coli. J. Biol. Chem. 264:14940-14946.
    • (1989) J. Biol. Chem. , vol.264 , pp. 14940-14946
    • Zvlstra, G.J.1    Gibson, D.T.2
  • 77
    • 0345380971 scopus 로고    scopus 로고
    • Personal communication
    • Zvlstra, G. J., and A. K. Goyal. 1996. Personal communication.
    • (1996)
    • Zvlstra, G.J.1    Goyal, A.K.2


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