-
1
-
-
0033823404
-
Microbial community dynamics during production of the mexican fermented maize dough pozol
-
Ben Omar, N., and Ampe, F. (2000) Microbial community dynamics during production of the mexican fermented maize dough pozol. Appl Environ Microbiol 66: 3664-3673.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3664-3673
-
-
Ben Omar, N.1
Ampe, F.2
-
2
-
-
0036202170
-
Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rDNA primers for the analysis of bacterial communities from different wastewater treatment plants
-
Boon, N., De Windt, W., Verstraete, W., and Top, E.M. (2002) Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rDNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol Ecol 39: 101-112.
-
(2002)
FEMS Microbiol Ecol
, vol.39
, pp. 101-112
-
-
Boon, N.1
De Windt, W.2
Verstraete, W.3
Top, E.M.4
-
3
-
-
0001522783
-
Correspondence analysis of incidence and abundance data: Properties in terms of unimodal response model
-
ter Braak, C.J.F. (1985) Correspondence analysis of incidence and abundance data: Properties in terms of unimodal response model. Biometrics 41: 859-873.
-
(1985)
Biometrics
, vol.41
, pp. 859-873
-
-
Ter Braak, C.J.F.1
-
4
-
-
0022843649
-
Canonical correspondence analysis: A new eigenvector technique for multivariate direct gradient analysis
-
ter Braak, C.J.F. (1986) Canonical correspondence analysis: A new eigenvector technique for multivariate direct gradient analysis. Ecology 67: 1167-1179.
-
(1986)
Ecology
, vol.67
, pp. 1167-1179
-
-
Ter Braak, C.J.F.1
-
5
-
-
0003567355
-
-
Cambridge, UK: Cambridge University Press
-
ter Braak, C.J.F., Van Tongeren, O.F.R., and Jongman, R.H.G. (1995) Data Analysis in Community and Landscape Ecology. Cambridge, UK: Cambridge University Press.
-
(1995)
Data Analysis in Community and Landscape Ecology
-
-
Ter Braak, C.J.F.1
Van Tongeren, O.F.R.2
Jongman, R.H.G.3
-
6
-
-
0033015223
-
Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled and successional soils
-
Bruns, M.A., Stephen, J.R., Kowalchuk, G.A., Prosser, J.I., and Paul, E.A. (1999) Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled and successional soils. Appl Environ Microbiol 65: 2994-3000.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 2994-3000
-
-
Bruns, M.A.1
Stephen, J.R.2
Kowalchuk, G.A.3
Prosser, J.I.4
Paul, E.A.5
-
7
-
-
0030755830
-
Screening for genetic diversity of isolates of anaerobic Fe (II) -oxidizing bacteria using DGGE and whole-cell hybridization
-
Buchholz-Cleven, B.E.E., Rattunde, B., and Straub, K. (1997) Screening for genetic diversity of isolates of anaerobic Fe (II) -oxidizing bacteria using DGGE and whole-cell hybridization. Syst Appl Microbiol 20: 301-309.
-
(1997)
Syst Appl Microbiol
, vol.20
, pp. 301-309
-
-
Buchholz-Cleven, B.E.E.1
Rattunde, B.2
Straub, K.3
-
9
-
-
0035076789
-
Monitoring of the microbial community of a sequencing batch reactor bioaugmented to improve its phosphorus removal capabilities
-
Dabert, P., Fleurat-Lessard, A., Mounier, E., Delgenes, J.P., Moletta, R., and Godon, J.J. (2001) Monitoring of the microbial community of a sequencing batch reactor bioaugmented to improve its phosphorus removal capabilities. Water Sci Technol 43: 1-8.
-
(2001)
Water Sci Technol
, vol.43
, pp. 1-8
-
-
Dabert, P.1
Fleurat-Lessard, A.2
Mounier, E.3
Delgenes, J.P.4
Moletta, R.5
Godon, J.J.6
-
10
-
-
0035403492
-
Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukariotic assemblages and comparison of DGGE with other molecular techniques
-
Diez, B., Pedros-Alio, C., Marsh, T.L., and Massana, R. (2001) Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukariotic assemblages and comparison of DGGE with other molecular techniques. Appl Environ Microbiol 67: 2942-2951.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2942-2951
-
-
Diez, B.1
Pedros-Alio, C.2
Marsh, T.L.3
Massana, R.4
-
11
-
-
0035671875
-
Interpreting 16S rDNA T-RFLP data: Application of self-organizing maps and principal component analysis to describe community dynamics and convergence
-
Dollhopf, S.L., Hashsham, S.A., and Tiedje, J.M. (2001) Interpreting 16S rDNA T-RFLP data: Application of self-organizing maps and principal component analysis to describe community dynamics and convergence. Microbial Ecol 42: 495-505.
-
(2001)
Microbial Ecol
, vol.42
, pp. 495-505
-
-
Dollhopf, S.L.1
Hashsham, S.A.2
Tiedje, J.M.3
-
12
-
-
0035163562
-
Analysis of bacterial communities in the rhizosphere of chrysanthenum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA
-
Duineveld, B.M., Kowalchuk, G.A., Keijzer, A., van Elsas, J.D., and van Veen, J.A. (2001) Analysis of bacterial communities in the rhizosphere of chrysanthenum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA. Appl Environ Microbiol 67: 172-178.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 172-178
-
-
Duineveld, B.M.1
Kowalchuk, G.A.2
Keijzer, A.3
Van Elsas, J.D.4
Van Veen, J.A.5
-
13
-
-
0036269049
-
Empirical and theoretical bacterial diversity in four Arizona soils
-
Dunbar, J., Barns, S.M., Ticknor, L.O., and Kuske, C.R. (2002) Empirical and theoretical bacterial diversity in four Arizona soils. Appl Environ Microbiol 68: 3035-3045.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3035-3045
-
-
Dunbar, J.1
Barns, S.M.2
Ticknor, L.O.3
Kuske, C.R.4
-
14
-
-
0034672742
-
Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis
-
van Elsas, J.D., Duarte, G.F., Keijzer-Wolters, A., and Smit, E. (2000) Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. J Microbiol Meth 43: 133-151.
-
(2000)
J Microbiol Meth
, vol.43
, pp. 133-151
-
-
Van Elsas, J.D.1
Duarte, G.F.2
Keijzer-Wolters, A.3
Smit, E.4
-
15
-
-
0031921271
-
Prominent occurrence of ribosomes from an uncultured bacterium of the Verrucomicrobiales cluster in grassland soils
-
Felske, A., and Akkermans, A.D. (1998) Prominent occurrence of ribosomes from an uncultured bacterium of the Verrucomicrobiales cluster in grassland soils. Lett Appl Microbiol 26: 219-223.
-
(1998)
Lett Appl Microbiol
, vol.26
, pp. 219-223
-
-
Felske, A.1
Akkermans, A.D.2
-
16
-
-
0033133556
-
Distribution of microbial assemblages in the central Arctic ocean basin studied by PCR/DGGE: Analysis of a large data set
-
Ferrari, V.C., and Hollibaugh, J.T. (1999) Distribution of microbial assemblages in the central Arctic ocean basin studied by PCR/DGGE: Analysis of a large data set. Hydrobiologia 401: 55-68.
-
(1999)
Hydrobiologia
, vol.401
, pp. 55-68
-
-
Ferrari, V.C.1
Hollibaugh, J.T.2
-
17
-
-
0030613348
-
Seasonal distribution of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis
-
Ferris, M.J., and Ward, D.M. (1997) Seasonal distribution of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis. Appl Environ Microbiol 63: 1375-1381.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1375-1381
-
-
Ferris, M.J.1
Ward, D.M.2
-
18
-
-
0032879764
-
Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
-
Fisher, M.M., and Triplett, E.W. (1999) Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 65: 4630-4636.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4630-4636
-
-
Fisher, M.M.1
Triplett, E.W.2
-
19
-
-
0034879576
-
Methanotrophic diversity in an agricultural soil as evaluated by denaturing gradient gel electrophoresis profiles of pmoA, mxaF and 16S rDNA sequences
-
Fjellbirkeland, A., Torsvik, V., and Øvreås, L. (2001) Methanotrophic diversity in an agricultural soil as evaluated by denaturing gradient gel electrophoresis profiles of pmoA, mxaF and 16S rDNA sequences. Antonie Van Leeuwenhoek 79: 209-217.
-
(2001)
Antonie Van Leeuwenhoek
, vol.79
, pp. 209-217
-
-
Fjellbirkeland, A.1
Torsvik, V.2
Øvreås, L.3
-
20
-
-
0012006935
-
Combined statistical analysis of bacterial community structures from an eutrophic lake revealed by DGGE, PLFA and chemical analysis
-
Luzern, Switzerland
-
Forestier, N., Steinmann, P., Lazko, E., Aragno, M., and Rossi, P. (2002) Combined statistical analysis of bacterial community structures from an eutrophic lake revealed by DGGE, PLFA and chemical analysis. In Abstracts Book 61st Annual Assembly of Swiss Society for Microbiology, Luzern, Switzerland, pp. 43.
-
(2002)
Abstracts Book 61st Annual Assembly of Swiss Society for Microbiology
, pp. 43
-
-
Forestier, N.1
Steinmann, P.2
Lazko, E.3
Aragno, M.4
Rossi, P.5
-
21
-
-
0035316222
-
Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado Plateau
-
Garcia-Pichel, F., López-Córtes, A., and Nübel, U. (2001) Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado Plateau. Appl Environ Microbiol 67: 1902-1910.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1902-1910
-
-
Garcia-Pichel, F.1
López-Córtes, A.2
Nübel, U.3
-
22
-
-
0035544053
-
Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes
-
van der Gucht, K., Sabbe, K., de Meester, L., Vloemens, N., Zwart, G., Gillis, M., and Vyverman, W. (2001) Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes. Environ Microbiol 3: 680-690.
-
(2001)
Environ Microbiol
, vol.3
, pp. 680-690
-
-
Van der Gucht, K.1
Sabbe, K.2
De Meester, L.3
Vloemens, N.4
Zwart, G.5
Gillis, M.6
Vyverman, W.7
-
23
-
-
0032975678
-
Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses
-
van Hannen, E.J., Zwart, G., van Agterveld, M.P., Gons, H.J., Ebert, J., and Laanbroek, H.J. (1999) Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses. Appl Environ Microbiol 65: 795-801.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 795-801
-
-
Van Hannen, E.J.1
Zwart, G.2
Van Agterveld, M.P.3
Gons, H.J.4
Ebert, J.5
Laanbroek, H.J.6
-
24
-
-
0036139245
-
Molecular diversity of Lactobacillus spp. & other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA
-
Heilig, H.G., Zoedental, E.G., Vaughan, E.E., Marteau, P., Akkermans, A.D., and de Vos, W.M. (2002) Molecular diversity of Lactobacillus spp. & other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl Environ Microbiol 68: 114-123.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 114-123
-
-
Heilig, H.G.1
Zoedental, E.G.2
Vaughan, E.E.3
Marteau, P.4
Akkermans, A.D.5
De Vos, W.M.6
-
25
-
-
0030739128
-
Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
-
Heuer, H., Krsek, M., Baker, P., Smalla, K., and Wellington, E.M. (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl Environ Microbiol 63: 3233-3241.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3233-3241
-
-
Heuer, H.1
Krsek, M.2
Baker, P.3
Smalla, K.4
Wellington, E.M.5
-
26
-
-
0033057111
-
Polynucleotide probes that target a hypervariable region of 16S rRNA genes to identify bacterial isolates corresponding to bands of community fingerprints
-
Heuer, H., Hartung, K., Wieland, G., Kramer, I., and Smalla, K. (1999) Polynucleotide probes that target a hypervariable region of 16S rRNA genes to identify bacterial isolates corresponding to bands of community fingerprints. Appl Environ Microbiol 65: 1045-1049.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 1045-1049
-
-
Heuer, H.1
Hartung, K.2
Wieland, G.3
Kramer, I.4
Smalla, K.5
-
27
-
-
0035406542
-
Impact of fumigants on soil microbial communities
-
Ibekwe, A.M., Papiernik, S.K., Gan, J., Yates, S.R., Yang, C.-H., and Crowley, D.E. (2001) Impact of fumigants on soil microbial communities. Appl Environ Microbiol 67: 3245-3257.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3245-3257
-
-
Ibekwe, A.M.1
Papiernik, S.K.2
Gan, J.3
Yates, S.R.4
Yang, C.-H.5
Crowley, D.E.6
-
28
-
-
0035212191
-
Molecular analysis of microbial community structure in an arsenite-oxidizing acidic thermal spring
-
Jackson, C.R., Langner, H.W., Donahoe-Christiansen, J., Inskeep, W.P., and McDermott, T.R. (2001) Molecular analysis of microbial community structure in an arsenite-oxidizing acidic thermal spring. Environ Microbiol 3: 532-542.
-
(2001)
Environ Microbiol
, vol.3
, pp. 532-542
-
-
Jackson, C.R.1
Langner, H.W.2
Donahoe-Christiansen, J.3
Inskeep, W.P.4
McDermott, T.R.5
-
29
-
-
0011939843
-
Comparison of bacterial community structure in conventional and organic raw milk samples using TTGE analysis
-
Amsterdam, Netherlands, FR 044
-
Jourdain-Miserez, K., Aragno, M., and Rossi, P. (2001) Comparison of bacterial community structure in conventional and organic raw milk samples using TTGE analysis. In Final Programm Abstracts, 9th Int Symp Microbial Ecol, Amsterdam, Netherlands, FR 044, pp. 176.
-
(2001)
Final Programm Abstracts, 9th Int Symp Microbial Ecol
, pp. 176
-
-
Jourdain-Miserez, K.1
Aragno, M.2
Rossi, P.3
-
30
-
-
0034803204
-
Analysis of the rumen bacterial diversity under two different diet conditions using Denaturing Gradient Gel Electrophoresis, random sequencing and statistical ecology approaches
-
Kocherginskaya, S.A., Aminov, R.I., and White, B.A. (2001) Analysis of the rumen bacterial diversity under two different diet conditions using Denaturing Gradient Gel Electrophoresis, random sequencing and statistical ecology approaches. Anaerobe 7: 119-134.
-
(2001)
Anaerobe
, vol.7
, pp. 119-134
-
-
Kocherginskaya, S.A.1
Aminov, R.I.2
White, B.A.3
-
31
-
-
0030901922
-
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
-
Kowalchuk, G.A., Stephen, J.R., de Boer, W., Prosser, J.I., Embley, T.M., and Woldendorp, J.W. (1997) Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl Environ Microbiol 63: 1489-1497.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1489-1497
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
De Boer, W.3
Prosser, J.I.4
Embley, T.M.5
Woldendorp, J.W.6
-
32
-
-
0032975666
-
Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in compost and composted materials
-
Kowalchuk, G.A., Naoumenko, Z.S., Derikx, P.J., Felske, A., Stephen, J.R., and Arkhipchenko, I.A. (1999) Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in compost and composted materials. Appl Environ Microbiol 65: 396-403.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 396-403
-
-
Kowalchuk, G.A.1
Naoumenko, Z.S.2
Derikx, P.J.3
Felske, A.4
Stephen, J.R.5
Arkhipchenko, I.A.6
-
33
-
-
0030438385
-
Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
-
Lee, S.Y., Bollinger, J., Bezdicek, D., and Ogram, A. (1996) Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl Environ Microbiol 62: 3787-3793.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3787-3793
-
-
Lee, S.Y.1
Bollinger, J.2
Bezdicek, D.3
Ogram, A.4
-
35
-
-
0033823656
-
Molecular analysis of diazotroph diversity in the rhizosphere of the smooth cordgrass, Spartina alterniflora
-
Lovell, C.R., Piceno, Y.M., Quattro, J.M., and Bagwell, C.E. (2000) Molecular analysis of diazotroph diversity in the rhizosphere of the smooth cordgrass, Spartina alterniflora. Appl Environ Microbiol 66: 3814-3822.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3814-3822
-
-
Lovell, C.R.1
Piceno, Y.M.2
Quattro, J.M.3
Bagwell, C.E.4
-
36
-
-
0014054519
-
The detection of disease clustering and a generalized regression approach
-
Mantel, N. (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27: 209-220.
-
(1967)
Cancer Res
, vol.27
, pp. 209-220
-
-
Mantel, N.1
-
37
-
-
0035487280
-
Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns
-
McCaig, A.E., Glover, L.A., and Prosser, J.I. (2001) Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns. Appl Environ Microbiol 67: 4554-4559.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4554-4559
-
-
McCaig, A.E.1
Glover, L.A.2
Prosser, J.I.3
-
38
-
-
0003078152
-
Application of common statistical tools
-
van Elsas, J.D., Trevors, J.T and Wellington, E.M.H., (eds). New York: Marcel Dekker
-
McSpadden Gardener, B.B., and Lilley, A.K. (1997) Application of common statistical tools. In Modern Soil Microbiology. van Elsas, J.D., Trevors, J.T and Wellington, E.M.H., (eds). New York: Marcel Dekker, pp. 501-523.
-
(1997)
Modern Soil Microbiology
, pp. 501-523
-
-
McSpadden Gardener, B.B.1
Lilley, A.K.2
-
39
-
-
0032812081
-
Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis
-
Moeseneder, M.M., Arrieta, J.M., Muyzer, G., Winter, C., and Herndl, G.J. (1999) Optimization of terminal-restriction fragment length polymorphism analysis for complex marine bacterioplankton communities and comparison with denaturing gradient gel electrophoresis. Appl Environ Microbiol 65: 3518-3525.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3518-3525
-
-
Moeseneder, M.M.1
Arrieta, J.M.2
Muyzer, G.3
Winter, C.4
Herndl, G.J.5
-
40
-
-
0035916397
-
Molecular approach to the characterization of fungal communities: Methods for DNA extraction, PCR amplification and DGGE analysis of painted art objects
-
Mohlenhoff, P., Muller, L., Gorbushina, A.A, and Petersen, K. (2001) Molecular approach to the characterization of fungal communities: Methods for DNA extraction, PCR amplification and DGGE analysis of painted art objects. FEMS Microbiol Lett 195: 169-173.
-
(2001)
FEMS Microbiol Lett
, vol.195
, pp. 169-173
-
-
Mohlenhoff, P.1
Muller, L.2
Gorbushina, A.A.3
Petersen, K.4
-
41
-
-
18744380657
-
Microbial diversity: Approaches to experimental design and hypothesis testing in the primary scientific literature from 1975 to 1999
-
in press
-
Morris, C.E., Bardin, M., Berge, O., Frey-Klett, P., Fromin, N., Girardin, H., et al. (2002) Microbial diversity: Approaches to experimental design and hypothesis testing in the primary scientific literature from 1975 to 1999. Microbiol Mol Biol Rev (in press).
-
(2002)
Microbiol Mol Biol Rev
-
-
Morris, C.E.1
Bardin, M.2
Berge, O.3
Frey-Klett, P.4
Fromin, N.5
Girardin, H.6
-
42
-
-
2542507755
-
The effect of long-term mercury pollution on the soil microbial community
-
Müller, A.K., Westergaard, K., Christensen, S., and Sørensen, S.J. (2001) The effect of long-term mercury pollution on the soil microbial community. FEMS Microbiol Ecol 36: 11-19.
-
(2001)
FEMS Microbiol Ecol
, vol.36
, pp. 11-19
-
-
Müller, A.K.1
Westergaard, K.2
Christensen, S.3
Sørensen, S.J.4
-
43
-
-
0030036446
-
Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
Murray, A.E., Hollibaugh, J.T., and Orrego, C. (1996) Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl Environ Microbiol 62: 2676-2680.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2676-2680
-
-
Murray, A.E.1
Hollibaugh, J.T.2
Orrego, C.3
-
44
-
-
0031814110
-
Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica
-
Murray, A.E., Preston, C.M., Massana, R., Taylor, L.T., Blakis, A., Wu, K., and DeLong, E.F. (1998) Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl Environ Microbiol 64: 2585-2595.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2585-2595
-
-
Murray, A.E.1
Preston, C.M.2
Massana, R.3
Taylor, L.T.4
Blakis, A.5
Wu, K.6
DeLong, E.F.7
-
45
-
-
0031959006
-
Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
-
Muyzer, G., and Smalla, K. (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73: 127-141.
-
(1998)
Antonie Van Leeuwenhoek
, vol.73
, pp. 127-141
-
-
Muyzer, G.1
Smalla, K.2
-
46
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer, G., de Waal, E.C., and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
47
-
-
0029097821
-
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
Muyzer, G., Teske, A., Wirsen, C.O., and Jannasch, H.W. (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch Microbiol 164: 165-172.
-
(1995)
Arch Microbiol
, vol.164
, pp. 165-172
-
-
Muyzer, G.1
Teske, A.2
Wirsen, C.O.3
Jannasch, H.W.4
-
48
-
-
0022422655
-
Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis
-
Myers, R.M., Fischer, S.G., Lerman, L.S., and Maniatis, T. (1985) Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acids Res 13: 3131-3145.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 3131-3145
-
-
Myers, R.M.1
Fischer, S.G.2
Lerman, L.S.3
Maniatis, T.4
-
49
-
-
0343247819
-
PCR primers to amplify 16S rRNA genes from cyanobacteria
-
Nübel, U., Garcia-Pichel, F., and Muyzer, G. (1997) PCR primers to amplify 16S rRNA genes from cyanobacteria. Appl Environ Microbiol 63: 3327-3332.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3327-3332
-
-
Nübel, U.1
Garcia-Pichel, F.2
Muyzer, G.3
-
50
-
-
2542509415
-
Quantifying microbial diversity: Morphotypes, 16S rRNA genes, and carotenoids of oxygenic phototrophs in microbial mats
-
Nübel, U., Garcia-Pichel, F., Kühl, M., and Muyzer, G. (1999a) Quantifying microbial diversity: Morphotypes, 16S rRNA genes, and carotenoids of oxygenic phototrophs in microbial mats. Appl Environ Microbiol 65: 422-430.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 422-430
-
-
Nübel, U.1
Garcia-Pichel, F.2
Kühl, M.3
Muyzer, G.4
-
51
-
-
0033133359
-
Spatial scale and the diversity of benthic cyanobacteria and diatoms in a salina
-
Nübel, U., Garcia-Pichel, F., Kühl, M., and Muyzer, G. (1999b) Spatial scale and the diversity of benthic cyano-bacteria and diatoms in a salina. Hydrobiologia 401: 381-391.
-
(1999)
Hydrobiologia
, vol.401
, pp. 381-391
-
-
Nübel, U.1
Garcia-Pichel, F.2
Kühl, M.3
Muyzer, G.4
-
52
-
-
0034953840
-
Plants and fertilisers as drivers of change in microbial community structure and function in soils
-
O'Donnell, A.G., Seasman, M., Macrae, A., Waite, I., and Davies, J.T. (2001) Plants and fertilisers as drivers of change in microbial community structure and function in soils. Plant Soil 232: 135-145.
-
(2001)
Plant Soil
, vol.232
, pp. 135-145
-
-
O'Donnell, A.G.1
Seasman, M.2
Macrae, A.3
Waite, I.4
Davies, J.T.5
-
53
-
-
0034795841
-
Succession of microbial communities during a bio-stimulation process as evaluated by DGGE and clone library analysis
-
Ogino, A., Koshikawa, H., Nakahara, T., and Uchiyama, H. (2001) Succession of microbial communities during a bio-stimulation process as evaluated by DGGE and clone library analysis. J Appl Microbiol 91: 625-635.
-
(2001)
J Appl Microbiol
, vol.91
, pp. 625-635
-
-
Ogino, A.1
Koshikawa, H.2
Nakahara, T.3
Uchiyama, H.4
-
54
-
-
0032875296
-
Spatial and temporal assessment of diazotroph assemblage composition in vegetated salt marsh sediments using denaturing gradient gel electrophoresis analysis
-
Piceno, Y.M., Noble, P.A., and Lovell, C.R. (1999) Spatial and temporal assessment of diazotroph assemblage composition in vegetated salt marsh sediments using denaturing gradient gel electrophoresis analysis. Microb Ecol 38: 157-167.
-
(1999)
Microb Ecol
, vol.38
, pp. 157-167
-
-
Piceno, Y.M.1
Noble, P.A.2
Lovell, C.R.3
-
55
-
-
0001815831
-
Computer-assisted analysis of molecular fingerprints and database construction
-
Akkermans, A.D.L., van Elsas, J.D and De Bruijn, F.J., (eds). Dordrecht: Kluwer Academic Publisher, chapter. 7.1.3
-
Rademaker, J.L.W., Louws, F.J., Rossbach, U., Vinuesa, P., and De Bruijn, F. (1999) Computer-assisted analysis of molecular fingerprints and database construction. In Molecular Microbial Ecology Manual. Akkermans, A.D.L., van Elsas, J.D and De Bruijn, F.J., (eds). Dordrecht: Kluwer Academic Publisher, chapter. 7.1.3.
-
(1999)
Molecular Microbial Ecology Manual
-
-
Rademaker, J.L.W.1
Louws, F.J.2
Rossbach, U.3
Vinuesa, P.4
De Bruijn, F.5
-
56
-
-
0034123066
-
Monitoring complex bacterial communities using culture-independent molecular techniques: Application to soil environment
-
Ranjard, L., Poly, F., and Nazaret, S. (2000a) Monitoring complex bacterial communities using culture-independent molecular techniques: Application to soil environment. Res Microbiol 151: 167-177.
-
(2000)
Res Microbiol
, vol.151
, pp. 167-177
-
-
Ranjard, L.1
Poly, F.2
Nazaret, S.3
-
57
-
-
0033986750
-
A soil microscale study to reveal the heterogeneity of Hg (II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints
-
Ranjard, L., Nazaret, S., Gourbière, F., Thioulouse, J., Linet, P., and Richaume, A. (2000b) A soil microscale study to reveal the heterogeneity of Hg (II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints. FEMS Microbiol Ecol 31: 107-115.
-
(2000)
FEMS Microbiol Ecol
, vol.31
, pp. 107-115
-
-
Ranjard, L.1
Nazaret, S.2
Gourbière, F.3
Thioulouse, J.4
Linet, P.5
Richaume, A.6
-
58
-
-
0035491310
-
Relationships between microbial community structure and hydrochemistry in a landfield leachate-polluted aquifer
-
Rölling, W.F.M., van Breukelen, B.M., Braster, M., Lin, B., and van Verseveld, H.W. (2001) Relationships between microbial community structure and hydrochemistry in a landfield leachate-polluted aquifer. Appl Environ Microbiol 67: 4619-4629.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4619-4629
-
-
Rölling, W.F.M.1
Van Breukelen, B.M.2
Braster, M.3
Lin, B.4
Van Verseveld, H.W.5
-
59
-
-
0142074115
-
Denaturing gradient gel electrophoresis in marine microbial ecology
-
Schäfer, H., and Muyzer, G. (2001) Denaturing gradient gel electrophoresis in marine microbial ecology. Meth Microbiol 30: 425-468.
-
(2001)
Meth Microbiol
, vol.30
, pp. 425-468
-
-
Schäfer, H.1
Muyzer, G.2
-
60
-
-
0034530892
-
Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: Changes in the genetic diversity of bacterial populations
-
Schäfer, H., Bernard, L., Courties, C., Lebaron, P., Servais, P., Pukall, R. et al. (2001) Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: Changes in the genetic diversity of bacterial populations. FEMS Microbiol Ecol 34: 243-253.
-
(2001)
FEMS Microbiol Ecol
, vol.34
, pp. 243-253
-
-
Schäfer, H.1
Bernard, L.2
Courties, C.3
Lebaron, P.4
Servais, P.5
Pukall, R.6
-
61
-
-
0031764376
-
A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
-
Schwieger, F., and Tebbe, C.C. (1998) A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 64: 4870-4876.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4870-4876
-
-
Schwieger, F.1
Tebbe, C.C.2
-
62
-
-
0032925262
-
Application of denaturant gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota
-
Simpson, J.M., McCracken, V.J., White, B.A., Gaskins, H.R., and Mackie, R.I. (1999) Application of denaturant gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota. J Microbiol Meth 36: 167-179.
-
(1999)
J Microbiol Meth
, vol.36
, pp. 167-179
-
-
Simpson, J.M.1
McCracken, V.J.2
White, B.A.3
Gaskins, H.R.4
Mackie, R.I.5
-
63
-
-
0035487320
-
Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: Plant-dependent enrichment and seasonal shifts revealed
-
Smalla, K., Wieland, G., Buchner, A., Zock, A., Parzy, J., Kaiser, S. et al. (2001) Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: Plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol 67: 4742-4751.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4742-4751
-
-
Smalla, K.1
Wieland, G.2
Buchner, A.3
Zock, A.4
Parzy, J.5
Kaiser, S.6
-
64
-
-
0030805071
-
Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis
-
Smit, E., Leeflang, P., and Wernars, K. (1997) Detection of shifts in microbial community structure and diversity in soil caused by copper contamination using amplified ribosomal DNA restriction analysis. FEMS Microbiol Ecol 23: 249-261.
-
(1997)
FEMS Microbiol Ecol
, vol.23
, pp. 249-261
-
-
Smit, E.1
Leeflang, P.2
Wernars, K.3
-
65
-
-
0032832253
-
Opening the black box of soil microbial diversity
-
Tiedje, J.M., Asuming-Brempong, S., Nüsslein, K., Marsh, T.L., and Flynn, S.J. (1999) Opening the black box of soil microbial diversity. Appl Soil Ecol 13: 109-122.
-
(1999)
Appl Soil Ecol
, vol.13
, pp. 109-122
-
-
Tiedje, J.M.1
Asuming-Brempong, S.2
Nüsslein, K.3
Marsh, T.L.4
Flynn, S.J.5
-
66
-
-
0030698675
-
Evaluation of denaturing gradient gel electrophoresis in the detection of 16S rDNA sequence variation in rhizobia and methanotrophs
-
Vallaeys, T., Topp, E., Muyzer, G., Macheret, V., Laguerre, G., Rigaud, A., and Soulas, G. (1997) Evaluation of denaturing gradient gel electrophoresis in the detection of 16S rDNA sequence variation in rhizobia and methanotrophs. FEMS Microbiol Ecol 24: 279-285.
-
(1997)
FEMS Microbiol Ecol
, vol.24
, pp. 279-285
-
-
Vallaeys, T.1
Topp, E.2
Muyzer, G.3
Macheret, V.4
Laguerre, G.5
Rigaud, A.6
Soulas, G.7
-
67
-
-
0030844080
-
Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes
-
Wang, G.C., and Wang, Y. (1997) Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes. Appl Environ Microbiol 63: 4645-4650.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4645-4650
-
-
Wang, G.C.1
Wang, Y.2
-
68
-
-
0025366456
-
16S rRNA sequences reveal numerous uncultured micro-organisms in a natural community
-
Ward, D.M., Weller, R., and Bateson, M.M. (1990) 16S rRNA sequences reveal numerous uncultured micro-organisms in a natural community. Nature 345: 63-65.
-
(1990)
Nature
, vol.345
, pp. 63-65
-
-
Ward, D.M.1
Weller, R.2
Bateson, M.M.3
-
69
-
-
0031734089
-
Molecular detection, isolation, and physiological characterisation of functionally dominant phenol-degrading bacteria in activated sludge
-
Watanabe, M., Teramoto, M., Futamata, H., and Harayama, S. (1998) Molecular detection, isolation, and physiological characterisation of functionally dominant phenol-degrading bacteria in activated sludge. Appl Environ Microbiol 64: 4396-4402.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4396-4402
-
-
Watanabe, M.1
Teramoto, M.2
Futamata, H.3
Harayama, S.4
-
70
-
-
0030666834
-
Genetic diversity and expression of the [NiFe] hydrogenase large-subunit gene of Desulfovibrio spp. in environmental samples
-
Wawer, C., Jetten, M.S., and Muyzer, G. (1997) Genetic diversity and expression of the [NiFe] hydrogenase large-subunit gene of Desulfovibrio spp. in environmental samples. Appl Environ Microbiol 63: 4360-4369.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4360-4369
-
-
Wawer, C.1
Jetten, M.S.2
Muyzer, G.3
-
71
-
-
0034975660
-
Assessing soil biological characteristics: A comparison of bulk soil community DNA-, PLFA-, and Biolog™-analysis
-
Widmer, F., Fliessbach, A., Laczkó, E., Schulze-Aurich, J., and Zeyer, J. (2001) Assessing soil biological characteristics: A comparison of bulk soil community DNA-, PLFA-, and Biolog™-analysis. Soil Biol Biochem 33: 1029-1036.
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 1029-1036
-
-
Widmer, F.1
Fliessbach, A.2
Laczkó, E.3
Schulze-Aurich, J.4
Zeyer, J.5
-
72
-
-
0033987792
-
Rhizosphere microbial community structure in relation to root location and plant iron nutritional status
-
Yang, C.H., and Crowley, D.E. (2000) Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl Environ Microbiol 66: 345-351.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 345-351
-
-
Yang, C.H.1
Crowley, D.E.2
-
73
-
-
0035075371
-
16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophtora infected avocado roots
-
Yang, C.H., Crowley, D.E., and Menge, J.A. (2001) 16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophtora infected avocado roots. FEMS Microbiol Ecol 35: 129-136.
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 129-136
-
-
Yang, C.H.1
Crowley, D.E.2
Menge, J.A.3
|