메뉴 건너뛰기




Volumn 100, Issue 21, 2016, Pages 8985-9001

Acetate metabolism regulation in Escherichia coli: carbon overflow, pathogenicity, and beyond

Author keywords

Acetate overflow; Catabolite repression; Central metabolism; Pathogenic E. coli; Protein acetylation; Proteome reallocation

Indexed keywords

ACETYLATION; BIOTECHNOLOGY; ESCHERICHIA COLI; NUTRIENTS; PHYSIOLOGY; STRAIN;

EID: 84988358293     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-016-7832-x     Document Type: Review
Times cited : (88)

References (159)
  • 1
    • 0034965129 scopus 로고    scopus 로고
    • Pyruvate oxidase contributes to the aerobic growth efficiency of Escherichia coli
    • COI: 1:CAS:528:DC%2BD3MXkslSqsb4%3D, PID: 11390679
    • Abdel-Hamid AM, Attwood MM, Guest JR (2001) Pyruvate oxidase contributes to the aerobic growth efficiency of Escherichia coli. Microbiology 147:1483–1498. doi:10.1099/00221287-147-6-1483
    • (2001) Microbiology , vol.147 , pp. 1483-1498
    • Abdel-Hamid, A.M.1    Attwood, M.M.2    Guest, J.R.3
  • 3
    • 84856088937 scopus 로고    scopus 로고
    • Escherichia coli physiology and metabolism dictates adaptation to diverse host microenvironments
    • COI: 1:CAS:528:DC%2BC38Xht1Ohsr0%3D, PID: 22204808
    • Alteri CJ, Mobley HLT (2012) Escherichia coli physiology and metabolism dictates adaptation to diverse host microenvironments. Curr Opin Microbiol 15:3–9. doi:10.1016/j.mib.2011.12.004
    • (2012) Curr Opin Microbiol , vol.15 , pp. 3-9
    • Alteri, C.J.1    Mobley, H.L.T.2
  • 4
    • 84880001463 scopus 로고    scopus 로고
    • Ubiquinone and menaquinone electron carriers represent the yin and yang in the redox regulation of the ArcB sensor kinase
    • COI: 1:CAS:528:DC%2BC3sXhtVWmtr3O, PID: 23645604
    • Alvarez AF, Rodriguez C, Georgellis D (2013) Ubiquinone and menaquinone electron carriers represent the yin and yang in the redox regulation of the ArcB sensor kinase. J Bacteriol 195:3054–3061. doi:10.1128/JB.00406-13
    • (2013) J Bacteriol , vol.195 , pp. 3054-3061
    • Alvarez, A.F.1    Rodriguez, C.2    Georgellis, D.3
  • 5
    • 57349123472 scopus 로고    scopus 로고
    • Uropathogenic Escherichia coli CFT073 is adapted to acetatogenic growth but does not require acetate during murine urinary tract infection
    • COI: 1:CAS:528:DC%2BD1cXhsVOgs7zJ, PID: 18838520
    • Anfora AT, Halladin DK, Haugen BJ, Welch RA (2008) Uropathogenic Escherichia coli CFT073 is adapted to acetatogenic growth but does not require acetate during murine urinary tract infection. Infect Immun 76:5760–5767. doi:10.1128/IAI.00618-08
    • (2008) Infect Immun , vol.76 , pp. 5760-5767
    • Anfora, A.T.1    Halladin, D.K.2    Haugen, B.J.3    Welch, R.A.4
  • 6
    • 78650900723 scopus 로고    scopus 로고
    • The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli
    • COI: 1:CAS:528:DC%2BC3MXosVKltg%3D%3D, PID: 21208457
    • Archer CT, Kim JF, Jeong H, Park JH, Vickers CE, Lee SY, Nielsen LK (2011) The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli. BMC Genomics 12:9. doi:10.1186/1471-2164-12-9
    • (2011) BMC Genomics , vol.12 , pp. 9
    • Archer, C.T.1    Kim, J.F.2    Jeong, H.3    Park, J.H.4    Vickers, C.E.5    Lee, S.Y.6    Nielsen, L.K.7
  • 8
    • 0029328409 scopus 로고
    • Metabolic engineering of Escherichia coli to enhance recombinant protein production through acetate reduction
    • COI: 1:CAS:528:DyaK2MXmvVeisrg%3D, PID: 7654314
    • Aristidou AA, San KY, Bennett GN (1995) Metabolic engineering of Escherichia coli to enhance recombinant protein production through acetate reduction. Biotechnol Prog 11:475–478. doi:10.1021/bp00034a019
    • (1995) Biotechnol Prog , vol.11 , pp. 475-478
    • Aristidou, A.A.1    San, K.Y.2    Bennett, G.N.3
  • 9
    • 0035920119 scopus 로고    scopus 로고
    • Escherichia coli CreBC is a global regulator of gene expression that responds to growth in minimal media
    • COI: 1:CAS:528:DC%2BD3MXlsV2jt7w%3D, PID: 11350954
    • Avison MB, Horton RE, Walsh TR, Bennett PM (2001) Escherichia coli CreBC is a global regulator of gene expression that responds to growth in minimal media. J Biol Chem 276:26955–26961. doi:10.1074/jbc.M011186200
    • (2001) J Biol Chem , vol.276 , pp. 26955-26961
    • Avison, M.B.1    Horton, R.E.2    Walsh, T.R.3    Bennett, P.M.4
  • 10
    • 0029636672 scopus 로고
    • Transport of lactate and acetate through the energized cytoplasmic membrane of Escherichia coli
    • COI: 1:CAS:528:DyaK2MXmt1aksLg%3D, PID: 18623362
    • Axe DD, Bailey JE (1995) Transport of lactate and acetate through the energized cytoplasmic membrane of Escherichia coli. Biotechnol Bioeng 47:8–19. doi:10.1002/bit.260470103
    • (1995) Biotechnol Bioeng , vol.47 , pp. 8-19
    • Axe, D.D.1    Bailey, J.E.2
  • 11
    • 84947583295 scopus 로고    scopus 로고
    • Overflow metabolism in Escherichia coli results from efficient proteome allocation
    • COI: 1:CAS:528:DC%2BC2MXhvFKht7vI, PID: 26632588
    • Basan M, Hui S, Okano H, Zhang Z, Shen Y, Williamson JR, Hwa T (2015) Overflow metabolism in Escherichia coli results from efficient proteome allocation. Nature 528:99–104. doi:10.1038/nature15765
    • (2015) Nature , vol.528 , pp. 99-104
    • Basan, M.1    Hui, S.2    Okano, H.3    Zhang, Z.4    Shen, Y.5    Williamson, J.R.6    Hwa, T.7
  • 13
    • 39049116054 scopus 로고    scopus 로고
    • Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
    • PID: 17967175
    • Bergholz TM, Wick LM, Qi W, Riordan JT, Ouellette LM, Whittam TS (2007) Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium. BMC Microbiol 7:97. doi:10.1186/1471-2180-7-97
    • (2007) BMC Microbiol , vol.7 , pp. 97
    • Bergholz, T.M.1    Wick, L.M.2    Qi, W.3    Riordan, J.T.4    Ouellette, L.M.5    Whittam, T.S.6
  • 15
    • 84866297923 scopus 로고    scopus 로고
    • Engineering Escherichia coli to increase plasmid DNA production in high cell-density cultivations in batch mode
    • COI: 1:CAS:528:DC%2BC3sXhsFyisb0%3D
    • Borja GM, Meza Mora E, Barrón B, Gosset G, Ramírez OT, Lara AR (2012) Engineering Escherichia coli to increase plasmid DNA production in high cell-density cultivations in batch mode. Microb Cell Factories 11:132. doi:10.1186/1475-2859-11-132
    • (2012) Microb Cell Factories , vol.11 , pp. 132
    • Borja, G.M.1    Meza Mora, E.2    Barrón, B.3    Gosset, G.4    Ramírez, O.T.5    Lara, A.R.6
  • 16
    • 0014374388 scopus 로고
    • Genetic control of isocitrate lyase activity in Escherichia coli
    • COI: 1:CAS:528:DyaF1MXjsFejtw%3D%3D, PID: 4881708
    • Brice CB, Kornberg HL (1968) Genetic control of isocitrate lyase activity in Escherichia coli. J Bacteriol 96:2185–2186
    • (1968) J Bacteriol , vol.96 , pp. 2185-2186
    • Brice, C.B.1    Kornberg, H.L.2
  • 17
    • 0017759929 scopus 로고
    • Enzymic interconversion of acetate and acetyl-coenzyme-a in Escherichia coli
    • COI: 1:CAS:528:DyaE1cXjsVeisg%3D%3D, PID: 21941
    • Brown TDK, Jonesmortimer MC, Kornberg HL (1977) Enzymic interconversion of acetate and acetyl-coenzyme-a in Escherichia coli. J Gen Microbiol 102:327–336
    • (1977) J Gen Microbiol , vol.102 , pp. 327-336
    • Brown, T.D.K.1    Jonesmortimer, M.C.2    Kornberg, H.L.3
  • 18
    • 48849086952 scopus 로고    scopus 로고
    • Bacteria in the intestine, helpful residents or enemies from within?
    • COI: 1:CAS:528:DC%2BD1cXptF2itL4%3D, PID: 18474643
    • Canny GO, McCormick BA (2008) Bacteria in the intestine, helpful residents or enemies from within? Infect Immun 76:3360–3373. doi:10.1128/IAI.00187-08
    • (2008) Infect Immun , vol.76 , pp. 3360-3373
    • Canny, G.O.1    McCormick, B.A.2
  • 19
    • 44349100490 scopus 로고    scopus 로고
    • Defining the growth conditions and promoter-proximal DNA sequences required for activation of gene expression by CreBC in Escherichia coli
    • COI: 1:CAS:528:DC%2BD1cXmsVOmsLo%3D, PID: 18375564
    • Cariss SJL, Tayler AE, Avison MB (2008) Defining the growth conditions and promoter-proximal DNA sequences required for activation of gene expression by CreBC in Escherichia coli. J Bacteriol 190:3930–3939. doi:10.1128/JB.00108-08
    • (2008) J Bacteriol , vol.190 , pp. 3930-3939
    • Cariss, S.J.L.1    Tayler, A.E.2    Avison, M.B.3
  • 22
    • 82155175630 scopus 로고    scopus 로고
    • cAMP-CRP co-ordinates the expression of the protein acetylation pathway with central metabolism in Escherichia coli
    • PID: 22059728
    • Castaño-Cerezo S, Bernal V, Blanco-Catalá J, Iborra JL, Cánovas M (2011) cAMP-CRP co-ordinates the expression of the protein acetylation pathway with central metabolism in Escherichia coli. Mol Microbiol 82:1110–1128
    • (2011) Mol Microbiol , vol.82 , pp. 1110-1128
    • Castaño-Cerezo, S.1    Bernal, V.2    Blanco-Catalá, J.3    Iborra, J.L.4    Cánovas, M.5
  • 24
    • 84930957726 scopus 로고    scopus 로고
    • Regulation of acetate metabolism in Escherichia coli BL21 by protein N(ε)-lysine acetylation
    • PID: 25524697
    • Castaño-Cerezo S, Bernal V, Röhrig T, Termeer S, Cánovas M (2015) Regulation of acetate metabolism in Escherichia coli BL21 by protein N(ε)-lysine acetylation. Appl Microbiol Biotechnol 99:3533–3545. doi:10.1007/s00253-014-6280-8
    • (2015) Appl Microbiol Biotechnol , vol.99 , pp. 3533-3545
    • Castaño-Cerezo, S.1    Bernal, V.2    Röhrig, T.3    Termeer, S.4    Cánovas, M.5
  • 25
    • 0028355910 scopus 로고
    • Expression of Escherichia coli pyruvate oxidase (PoxB) depends on the sigma factor encoded by the rpoS(katF) gene
    • COI: 1:CAS:528:DyaK2cXktVagu78%3D, PID: 8022274
    • Chang YY, Wang AY, Cronan JE (1994) Expression of Escherichia coli pyruvate oxidase (PoxB) depends on the sigma factor encoded by the rpoS(katF) gene. Mol Microbiol 11:1019–1028
    • (1994) Mol Microbiol , vol.11 , pp. 1019-1028
    • Chang, Y.Y.1    Wang, A.Y.2    Cronan, J.E.3
  • 27
    • 24044525238 scopus 로고    scopus 로고
    • High-level recombinant protein production by overexpression of Mlc in Escherichia coli
    • COI: 1:CAS:528:DC%2BD2MXpslChtLo%3D, PID: 15916829
    • Cho S, Shin D, Ji GE, Heu S, Ryu S (2005) High-level recombinant protein production by overexpression of Mlc in Escherichia coli. J Biotechnol 119:197–203. doi:10.1016/j.jbiotec.2005.03.008
    • (2005) J Biotechnol , vol.119 , pp. 197-203
    • Cho, S.1    Shin, D.2    Ji, G.E.3    Heu, S.4    Ryu, S.5
  • 28
    • 0028535143 scopus 로고
    • Effect of modulated glucose uptake on high-level recombinant protein production in a dense Escherichia coli culture
    • COI: 1:CAS:528:DyaK2cXmslyqsbo%3D, PID: 7765699
    • Chou CH, Bennett GN, San KY (1994) Effect of modulated glucose uptake on high-level recombinant protein production in a dense Escherichia coli culture. Biotechnol Prog 10:644–647. doi:10.1021/bp00030a009
    • (1994) Biotechnol Prog , vol.10 , pp. 644-647
    • Chou, C.H.1    Bennett, G.N.2    San, K.Y.3
  • 29
    • 0023703923 scopus 로고
    • Glyoxylate bypass operon of Escherichia coli: cloning and determination of the functional map
    • Chung T, Klumpp DJ, LaPorte DC (1988) Glyoxylate bypass operon of Escherichia coli: cloning and determination of the functional map. J Bacteriol 170(1):386–392
    • (1988) J Bacteriol , vol.170 , Issue.1 , pp. 386-392
    • Chung, T.1    Klumpp, D.J.2    LaPorte, D.C.3
  • 30
    • 0033845185 scopus 로고    scopus 로고
    • Effects of mutations in acetate metabolism on high-cell-density growth of Escherichia coli
    • COI: 1:CAS:528:DC%2BD3cXmtFyhsbY%3D
    • Contiero J, Beatty C, Kumari S, DeSanti CL, Strohl WR, Wolfe A (2000) Effects of mutations in acetate metabolism on high-cell-density growth of Escherichia coli. J Ind Microbiol Biotechnol 24:421–430. doi:10.1038/sj.jim.7000014
    • (2000) J Ind Microbiol Biotechnol , vol.24 , pp. 421-430
    • Contiero, J.1    Beatty, C.2    Kumari, S.3    DeSanti, C.L.4    Strohl, W.R.5    Wolfe, A.6
  • 31
    • 84870309723 scopus 로고    scopus 로고
    • Structural insights into the substrate specificity of the Rhodopseudomonas palustris protein acetyltransferase RpPat: identification of a loop critical for recognition by RpPat
    • COI: 1:CAS:528:DC%2BC38XhslGjsL%2FP, PID: 23076154
    • Crosby HA, Rank KC, Rayment I, Escalante-Semerena JC (2012) Structural insights into the substrate specificity of the Rhodopseudomonas palustris protein acetyltransferase RpPat: identification of a loop critical for recognition by RpPat. J Biol Chem 287:41392–41404. doi:10.1074/jbc.M112.417360
    • (2012) J Biol Chem , vol.287 , pp. 41392-41404
    • Crosby, H.A.1    Rank, K.C.2    Rayment, I.3    Escalante-Semerena, J.C.4
  • 32
    • 0023213832 scopus 로고
    • Fermentation in the human large intestine and the available substrates
    • COI: 1:CAS:528:DyaL2sXkslCrs78%3D, PID: 3034048
    • Cummings JH, Englyst HN (1987) Fermentation in the human large intestine and the available substrates. Am J Clin Nutr 45:1243–1255
    • (1987) Am J Clin Nutr , vol.45 , pp. 1243-1255
    • Cummings, J.H.1    Englyst, H.N.2
  • 33
    • 67650066209 scopus 로고    scopus 로고
    • Factors affecting plasmid production in Escherichia coli from a resource allocation standpoint
    • Cunningham DS, Koepsel RR, Ataai MM, Domach MM (2009) Factors affecting plasmid production in Escherichia coli from a resource allocation standpoint. Microb Cell Factories 8:27. doi:10.1186/1475-2859-8-27
    • (2009) Microb Cell Factories , vol.8 , pp. 27
    • Cunningham, D.S.1    Koepsel, R.R.2    Ataai, M.M.3    Domach, M.M.4
  • 34
    • 70449533064 scopus 로고    scopus 로고
    • Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3)
    • COI: 1:CAS:528:DC%2BD1MXhsVKnsbrN, PID: 19765591
    • Daegelen P, Studier FW, Lenski RE, Cure S, Kim JF (2009) Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3). J Mol Biol 394:634–643. doi:10.1016/j.jmb.2009.09.022
    • (2009) J Mol Biol , vol.394 , pp. 634-643
    • Daegelen, P.1    Studier, F.W.2    Lenski, R.E.3    Cure, S.4    Kim, J.F.5
  • 35
    • 33646082049 scopus 로고    scopus 로고
    • Replacement of the glucose phosphotransferase transport system by galactose permease reduces acetate accumulation and improves process performance of Escherichia coli for recombinant protein production without impairment of growth rate
    • COI: 1:CAS:528:DC%2BD28XjvVGgsbg%3D, PID: 16517196
    • De Anda R, Lara AR, Hernández V, Hernández-Montalvo V, Gosset G, Bolívar F, Ramírez OT (2006) Replacement of the glucose phosphotransferase transport system by galactose permease reduces acetate accumulation and improves process performance of Escherichia coli for recombinant protein production without impairment of growth rate. Metab Eng 8:281–290. doi:10.1016/j.ymben.2006.01.002
    • (2006) Metab Eng , vol.8 , pp. 281-290
    • De Anda, R.1    Lara, A.R.2    Hernández, V.3    Hernández-Montalvo, V.4    Gosset, G.5    Bolívar, F.6    Ramírez, O.T.7
  • 37
    • 0032906898 scopus 로고    scopus 로고
    • The steady-state internal redox state (NADH/NAD) reflects the external redox state and is correlated with catabolic adaptation in Escherichia coli
    • PID: 10197995
    • de Graef MR, Alexeeva S, Snoep JL, Teixeira de Mattos MJ (1999) The steady-state internal redox state (NADH/NAD) reflects the external redox state and is correlated with catabolic adaptation in Escherichia coli. J Bacteriol 181:2351–2357
    • (1999) J Bacteriol , vol.181 , pp. 2351-2357
    • de Graef, M.R.1    Alexeeva, S.2    Snoep, J.L.3    Teixeira de Mattos, M.J.4
  • 39
    • 35448943566 scopus 로고    scopus 로고
    • Minimizing acetate formation in E. coli fermentations
    • COI: 1:CAS:528:DC%2BD2sXhtFyqsrnM, PID: 17668256
    • De Mey M, De Maeseneire S, Soetaert W, Vandamme E (2007b) Minimizing acetate formation in E. coli fermentations. J Ind Microbiol Biotechnol 34:689–700. doi:10.1007/s10295-007-0244-2
    • (2007) J Ind Microbiol Biotechnol , vol.34 , pp. 689-700
    • De Mey, M.1    De Maeseneire, S.2    Soetaert, W.3    Vandamme, E.4
  • 40
    • 79960847595 scopus 로고    scopus 로고
    • Cross-feeding between bifidobacteria and butyrate-producing colon bacteria explains bifdobacterial competitiveness, butyrate production, and gas production
    • COI: 1:CAS:528:DC%2BC3MXpslajtL8%3D, PID: 21450362
    • De Vuyst L, Leroy F (2011) Cross-feeding between bifidobacteria and butyrate-producing colon bacteria explains bifdobacterial competitiveness, butyrate production, and gas production. Int J Food Microbiol 149:73–80. doi:10.1016/j.ijfoodmicro.2011.03.003
    • (2011) Int J Food Microbiol , vol.149 , pp. 73-80
    • De Vuyst, L.1    Leroy, F.2
  • 41
    • 0030960219 scopus 로고    scopus 로고
    • The ability of Escherichia coli O157:H7 to decrease its intracellular pH and resist the toxicity of acetic acid
    • COI: 1:CAS:528:DyaK2sXjtVWqsLs%3D, PID: 9141680
    • Diez-Gonzalez F, Russell JB (1997) The ability of Escherichia coli O157:H7 to decrease its intracellular pH and resist the toxicity of acetic acid. Microbiology 143(Pt 4):1175–1180. doi:10.1099/00221287-143-4-1175
    • (1997) Microbiology , vol.143 , pp. 1175-1180
    • Diez-Gonzalez, F.1    Russell, J.B.2
  • 42
    • 23344450789 scopus 로고    scopus 로고
    • Characterization of the acetate-producing pathways in Escherichia coli
    • COI: 1:CAS:528:DC%2BD2MXltlGhtrc%3D, PID: 16080684
    • Dittrich CR, Bennett GN, San K-Y (2005) Characterization of the acetate-producing pathways in Escherichia coli. Biotechnol Prog 21:1062–1067. doi:10.1021/bp050073s
    • (2005) Biotechnol Prog , vol.21 , pp. 1062-1067
    • Dittrich, C.R.1    Bennett, G.N.2    San, K.-Y.3
  • 43
    • 33749571961 scopus 로고    scopus 로고
    • Overcoming acetate in Escherichia coli recombinant protein fermentations
    • COI: 1:CAS:528:DC%2BD28XhtVOrt77E, PID: 16971006
    • Eiteman MA, Altman E (2006) Overcoming acetate in Escherichia coli recombinant protein fermentations. Trends Biotechnol 24:530–536. doi:10.1016/j.tibtech.2006.09.001
    • (2006) Trends Biotechnol , vol.24 , pp. 530-536
    • Eiteman, M.A.1    Altman, E.2
  • 44
    • 84940862296 scopus 로고    scopus 로고
    • Acetate exposure determines the diauxic behavior of Escherichia coli during the glucose-acetate transition
    • PID: 26216845
    • Enjalbert B, Cocaign-Bousquet M, Portais J-C, Letisse F (2015) Acetate exposure determines the diauxic behavior of Escherichia coli during the glucose-acetate transition. J Bacteriol. doi:10.1128/JB.00128-15
    • (2015) J Bacteriol
    • Enjalbert, B.1    Cocaign-Bousquet, M.2    Portais, J.-C.3    Letisse, F.4
  • 45
    • 84867322381 scopus 로고    scopus 로고
    • Current knowledge of the Escherichia coli phosphoenolpyruvate-carbohydrate phosphotransferase system: peculiarities of regulation and impact on growth and product formation
    • COI: 1:CAS:528:DC%2BC38XnsVChtr0%3D, PID: 22573269
    • Escalante A, Salinas Cervantes A, Gosset G, Bolívar F (2012) Current knowledge of the Escherichia coli phosphoenolpyruvate-carbohydrate phosphotransferase system: peculiarities of regulation and impact on growth and product formation. Appl Microbiol Biotechnol 94:1483–1494. doi:10.1007/s00253-012-4101-5
    • (2012) Appl Microbiol Biotechnol , vol.94 , pp. 1483-1494
    • Escalante, A.1    Salinas Cervantes, A.2    Gosset, G.3    Bolívar, F.4
  • 46
    • 84895823701 scopus 로고    scopus 로고
    • Dual role of transcription and transcript stability in the regulation of gene expression in Escherichia coli cells cultured on glucose at different growth rates
    • PID: 24243845
    • Esquerré T, Laguerre S, Turlan C, Carpousis AJ, Girbal L, Cocaign-Bousquet M (2014) Dual role of transcription and transcript stability in the regulation of gene expression in Escherichia coli cells cultured on glucose at different growth rates. Nucleic Acids Res 42:2460–2472. doi:10.1093/nar/gkt1150
    • (2014) Nucleic Acids Res , vol.42 , pp. 2460-2472
    • Esquerré, T.1    Laguerre, S.2    Turlan, C.3    Carpousis, A.J.4    Girbal, L.5    Cocaign-Bousquet, M.6
  • 47
    • 85032069770 scopus 로고    scopus 로고
    • The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli
    • PID: 27112822
    • Esquerré T, Bouvier M, Turlan C, Carpousis AJ, Girbal L, Cocaign-Bousquet M (2016) The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli. Sci Rep 6:25057. doi:10.1038/srep25057
    • (2016) Sci Rep , vol.6 , pp. 25057
    • Esquerré, T.1    Bouvier, M.2    Turlan, C.3    Carpousis, A.J.4    Girbal, L.5    Cocaign-Bousquet, M.6
  • 49
    • 0030853330 scopus 로고    scopus 로고
    • Reduction of aerobic acetate production by Escherichia coli
    • COI: 1:CAS:528:DyaK2sXlt1Wis7s%3D, PID: 9251207
    • Farmer WR, Liao JC (1997) Reduction of aerobic acetate production by Escherichia coli. Appl Environ Microbiol 63:3205–3210
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3205-3210
    • Farmer, W.R.1    Liao, J.C.2
  • 50
    • 0034024497 scopus 로고    scopus 로고
    • Improving lycopene production in Escherichia coli by engineering metabolic control
    • COI: 1:CAS:528:DC%2BD3cXjsVKjsLg%3D, PID: 10802621
    • Farmer WR, Liao JC (2000) Improving lycopene production in Escherichia coli by engineering metabolic control. Nat Biotechnol 18:533–537. doi:10.1038/75398
    • (2000) Nat Biotechnol , vol.18 , pp. 533-537
    • Farmer, W.R.1    Liao, J.C.2
  • 51
    • 0344443759 scopus 로고    scopus 로고
    • A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli
    • Fischer E, Sauer U (2003) A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. J Biol Chem 278(47):46446–46451
    • (2003) J Biol Chem , vol.278 , Issue.47 , pp. 46446-46451
    • Fischer, E.1    Sauer, U.2
  • 52
    • 84876862339 scopus 로고    scopus 로고
    • Modification of glucose import capacity in Escherichia coli: physiologic consequences and utility for improving DNA vaccine production
    • COI: 1:CAS:528:DC%2BC3sXoslansro%3D
    • Fuentes LG, Lara AR, Martínez LM, Ramírez OT, Martínez A, Bolívar F, Gosset G (2013) Modification of glucose import capacity in Escherichia coli: physiologic consequences and utility for improving DNA vaccine production. Microb Cell Factories 12:42. doi:10.1186/1475-2859-12-42
    • (2013) Microb Cell Factories , vol.12 , pp. 42
    • Fuentes, L.G.1    Lara, A.R.2    Martínez, L.M.3    Ramírez, O.T.4    Martínez, A.5    Bolívar, F.6    Gosset, G.7
  • 53
    • 84912019905 scopus 로고    scopus 로고
    • Protein acetylation and acetyl coenzyme a metabolism in budding yeast
    • PID: 25326522
    • Galdieri L, Zhang T, Rogerson D, Lleshi R, Vancura A (2014) Protein acetylation and acetyl coenzyme a metabolism in budding yeast. Eukaryot Cell 13:1472–1483. doi:10.1128/EC.00189-14
    • (2014) Eukaryot Cell , vol.13 , pp. 1472-1483
    • Galdieri, L.1    Zhang, T.2    Rogerson, D.3    Lleshi, R.4    Vancura, A.5
  • 54
    • 47249127304 scopus 로고    scopus 로고
    • Biochemical and mutational analyses of AcuA, the acetyltransferase enzyme that controls the activity of the acetyl coenzyme A synthetase (AcsA) in Bacillus subtilis
    • COI: 1:CAS:528:DC%2BD1cXosFWkurg%3D, PID: 18487328
    • Gardner JG, Escalante-Semerena JC (2008) Biochemical and mutational analyses of AcuA, the acetyltransferase enzyme that controls the activity of the acetyl coenzyme A synthetase (AcsA) in Bacillus subtilis. J Bacteriol 190:5132–5136
    • (2008) J Bacteriol , vol.190 , pp. 5132-5136
    • Gardner, J.G.1    Escalante-Semerena, J.C.2
  • 55
    • 0035933597 scopus 로고    scopus 로고
    • Quinones as the redox signal for the arc two-component system of bacteria
    • COI: 1:CAS:528:DC%2BD3MXkslShsbs%3D, PID: 11423658
    • Georgellis D, Kwon O, Lin ECC (2001) Quinones as the redox signal for the arc two-component system of bacteria. Science 292(80):2314–2316. doi:10.1126/science.1059361
    • (2001) Science , vol.292 , Issue.80 , pp. 2314-2316
    • Georgellis, D.1    Kwon, O.2    Lin, E.C.C.3
  • 57
    • 10744225021 scopus 로고    scopus 로고
    • The gene yjcG, cotranscribed with the gene acs, encodes an acetate permease in Escherichia coli
    • COI: 1:CAS:528:DC%2BD3sXosV2kt7w%3D, PID: 14563880
    • Gimenez R, Nunez MF, Badia J, Aguilar J, Baldoma L (2003) The gene yjcG, cotranscribed with the gene acs, encodes an acetate permease in Escherichia coli. J Bacteriol 185:6448–6455
    • (2003) J Bacteriol , vol.185 , pp. 6448-6455
    • Gimenez, R.1    Nunez, M.F.2    Badia, J.3    Aguilar, J.4    Baldoma, L.5
  • 58
    • 0019519975 scopus 로고
    • Growth of E. coli W to high cell concentration by oxygen level linked control of carbon source concentration
    • COI: 1:CAS:528:DyaL3MXktVGju7s%3D
    • Gleiser IE, Bauer S (1981) Growth of E. coli W to high cell concentration by oxygen level linked control of carbon source concentration. Biotechnol Bioeng 23:1015–1021. doi:10.1002/bit.260230509
    • (1981) Biotechnol Bioeng , vol.23 , pp. 1015-1021
    • Gleiser, I.E.1    Bauer, S.2
  • 59
    • 84953931969 scopus 로고    scopus 로고
    • The CreC regulator of Escherichia coli, a new target for metabolic manipulations
    • PID: 26497466
    • Godoy MS, Nikel PI, Cabrera Gomez JG, Pettinari MJ (2015) The CreC regulator of Escherichia coli, a new target for metabolic manipulations. Appl Environ Microbiol 82:244–254. doi:10.1128/AEM.02984-15
    • (2015) Appl Environ Microbiol , vol.82 , pp. 244-254
    • Godoy, M.S.1    Nikel, P.I.2    Cabrera Gomez, J.G.3    Pettinari, M.J.4
  • 60
    • 84873993482 scopus 로고    scopus 로고
    • De novo creation of MG1655-derived E. coli strains specifically designed for plasmid DNA production
    • PID: 22885693
    • Gonçalves GAL, Prazeres DMF, Monteiro GA, Prather KLJ (2013) De novo creation of MG1655-derived E. coli strains specifically designed for plasmid DNA production. Appl Microbiol Biotechnol 97:611–620. doi:10.1007/s00253-012-4308-5
    • (2013) Appl Microbiol Biotechnol , vol.97 , pp. 611-620
    • Gonçalves, G.A.L.1    Prazeres, D.M.F.2    Monteiro, G.A.3    Prather, K.L.J.4
  • 61
    • 84940467061 scopus 로고    scopus 로고
    • Enforced ATP futile cycling increases specific productivity and yield of anaerobic lactate production in Escherichia coli
    • PID: 25899755
    • Hädicke O, Bettenbrock K, Klamt S (2015) Enforced ATP futile cycling increases specific productivity and yield of anaerobic lactate production in Escherichia coli. Biotechnol Bioeng 112:2195–2199. doi:10.1002/bit.25623
    • (2015) Biotechnol Bioeng , vol.112 , pp. 2195-2199
    • Hädicke, O.1    Bettenbrock, K.2    Klamt, S.3
  • 62
    • 79251526849 scopus 로고    scopus 로고
    • Escherichia coli global gene expression in urine from women with urinary tract infection
    • PID: 21085611
    • Hagan EC, Lloyd AL, Rasko DA, Faerber GJ, Mobley HLT (2010) Escherichia coli global gene expression in urine from women with urinary tract infection. PLoS Pathog 6:e1001187. doi:10.1371/journal.ppat.1001187
    • (2010) PLoS Pathog , vol.6
    • Hagan, E.C.1    Lloyd, A.L.2    Rasko, D.A.3    Faerber, G.J.4    Mobley, H.L.T.5
  • 63
    • 0026832754 scopus 로고
    • Acetic acid formation in Escherichia coli fermentation
    • COI: 1:CAS:528:DyaK38Xhs12ru7w%3D, PID: 18600996
    • Han K, Lim HC, Hong J (1992) Acetic acid formation in Escherichia coli fermentation. Biotechnol Bioeng 39:663–671. doi:10.1002/bit.260390611
    • (1992) Biotechnol Bioeng , vol.39 , pp. 663-671
    • Han, K.1    Lim, H.C.2    Hong, J.3
  • 64
    • 84910623900 scopus 로고    scopus 로고
    • The acetate switch of an intestinal pathogen disrupts host insulin signaling and lipid metabolism
    • COI: 1:CAS:528:DC%2BC2cXhvV2nurnP, PID: 25525791
    • Hang S, Purdy AE, Robins WP, Wang Z, Mandal M, Chang S, Mekalanos JJ, Watnick PI (2014) The acetate switch of an intestinal pathogen disrupts host insulin signaling and lipid metabolism. Cell Host Microbe 16:592–604. doi:10.1016/j.chom.2014.10.006
    • (2014) Cell Host Microbe , vol.16 , pp. 592-604
    • Hang, S.1    Purdy, A.E.2    Robins, W.P.3    Wang, Z.4    Mandal, M.5    Chang, S.6    Mekalanos, J.J.7    Watnick, P.I.8
  • 65
    • 0035961748 scopus 로고    scopus 로고
    • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
    • COI: 1:CAS:528:DC%2BD3MXhvVChtb8%3D, PID: 11258796
    • Hayashi T (2001) Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res 8:11–22. doi:10.1093/dnares/8.1.11
    • (2001) DNA Res , vol.8 , pp. 11-22
    • Hayashi, T.1
  • 66
    • 84883335398 scopus 로고    scopus 로고
    • Reversible acetylation regulates acetate and propionate metabolism in Mycobacterium smegmatis
    • COI: 1:CAS:528:DC%2BC3sXhslSqt7zM, PID: 23813678
    • Hayden JD, Brown LR, Gunawardena HP, Perkowski EF, Chen X, Braunstein M (2013) Reversible acetylation regulates acetate and propionate metabolism in Mycobacterium smegmatis. Microbiology 159:1986–1999. doi:10.1099/mic.0.068585-0
    • (2013) Microbiology , vol.159 , pp. 1986-1999
    • Hayden, J.D.1    Brown, L.R.2    Gunawardena, H.P.3    Perkowski, E.F.4    Chen, X.5    Braunstein, M.6
  • 67
    • 84940849315 scopus 로고    scopus 로고
    • Deciphering the regulatory circuitry that controls reversible lysine acetylation in Salmonella enterica
    • PID: 26199328
    • Hentchel KL, Thao S, Intile PJ, Escalante-Semerena JC (2015) Deciphering the regulatory circuitry that controls reversible lysine acetylation in Salmonella enterica. MBio. doi:10.1128/mBio.00891-15
    • (2015) MBio
    • Hentchel, K.L.1    Thao, S.2    Intile, P.J.3    Escalante-Semerena, J.C.4
  • 68
    • 70450284287 scopus 로고    scopus 로고
    • Differential effects of short-chain fatty acids and iron on expression of iha in Shiga-toxigenic Escherichia coli
    • COI: 1:CAS:528:DC%2BD1MXhsFeksb7O, PID: 19684070
    • Herold S, Paton JC, Srimanote P, Paton AW (2009) Differential effects of short-chain fatty acids and iron on expression of iha in Shiga-toxigenic Escherichia coli. Microbiology 155:3554–3563. doi:10.1099/mic.0.029454-0
    • (2009) Microbiology , vol.155 , pp. 3554-3563
    • Herold, S.1    Paton, J.C.2    Srimanote, P.3    Paton, A.W.4
  • 69
    • 58949101296 scopus 로고    scopus 로고
    • An Escherichia coli aer mutant exhibits a reduced ability to colonize the streptomycin-treated mouse large intestine
    • COI: 1:CAS:528:DC%2BD1MXpt1entA%3D%3D, PID: 19130287
    • Horne SM, Mattson KR, Prüss BM (2009) An Escherichia coli aer mutant exhibits a reduced ability to colonize the streptomycin-treated mouse large intestine. Antonie Van Leeuwenhoek 95:149–158. doi:10.1007/s10482-008-9298-z
    • (2009) Antonie Van Leeuwenhoek , vol.95 , pp. 149-158
    • Horne, S.M.1    Mattson, K.R.2    Prüss, B.M.3
  • 71
    • 84988499127 scopus 로고    scopus 로고
    • The protein acyltransferase Pat post-transcriptionally controls HilD to repress Salmonella invasion
    • PID: 27341691
    • Hung C-C, Eade CR, Altier C (2016) The protein acyltransferase Pat post-transcriptionally controls HilD to repress Salmonella invasion. Mol Microbiol. doi:10.1111/mmi.13451
    • (2016) Mol Microbiol
    • Hung, C.-C.1    Eade, C.R.2    Altier, C.3
  • 73
    • 84868225149 scopus 로고    scopus 로고
    • Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
    • COI: 1:CAS:528:DC%2BC3sXot1Wmsb0%3D, PID: 23114024
    • Kaas RS, Friis C, Ussery DW, Aarestrup FM (2012) Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes. BMC Genomics 13:577. doi:10.1186/1471-2164-13-577
    • (2012) BMC Genomics , vol.13 , pp. 577
    • Kaas, R.S.1    Friis, C.2    Ussery, D.W.3    Aarestrup, F.M.4
  • 74
    • 0028138812 scopus 로고
    • Identification and characterization of ackA (acetate kinase A)-pta (phosphotransacetylase) operon and complementation analysis of acetate utilization by an ackA-pta deletion mutant of Escherichia coli
    • COI: 1:CAS:528:DyaK2MXit1CqsbY%3D, PID: 7883769
    • Kakuda H, Hosono K, Shiroishi K, Ichihara S (1994) Identification and characterization of ackA (acetate kinase A)-pta (phosphotransacetylase) operon and complementation analysis of acetate utilization by an ackA-pta deletion mutant of Escherichia coli. J Biochem 116:916–922
    • (1994) J Biochem , vol.116 , pp. 916-922
    • Kakuda, H.1    Hosono, K.2    Shiroishi, K.3    Ichihara, S.4
  • 75
    • 1842508193 scopus 로고    scopus 로고
    • Pathogenic Escherichia coli
    • COI: 1:CAS:528:DC%2BD2cXhs1yntLk%3D, PID: 15040260
    • Kaper JB, Nataro JP, Mobley HL (2004) Pathogenic Escherichia coli. Nat Rev Microbiol 2:123–140. doi:10.1038/nrmicro818
    • (2004) Nat Rev Microbiol , vol.2 , pp. 123-140
    • Kaper, J.B.1    Nataro, J.P.2    Mobley, H.L.3
  • 78
    • 84937393782 scopus 로고    scopus 로고
    • Reduction of acetate and lactate contributed to enhancement of a recombinant protein production in E. coli BL21
    • COI: 1:CAS:528:DC%2BC2MXhvFKnu7jI, PID: 25791848
    • Kim T-S, Jung H-M, Kim S-Y, Zhang L, Li J, Sigdel S, Park J-H, Haw J-R, Lee J-K (2015) Reduction of acetate and lactate contributed to enhancement of a recombinant protein production in E. coli BL21. J Microbiol Biotechnol 25:1093–1100. doi:10.4014/jmb.1503.03023
    • (2015) J Microbiol Biotechnol , vol.25 , pp. 1093-1100
    • Kim, T.-S.1    Jung, H.-M.2    Kim, S.-Y.3    Zhang, L.4    Li, J.5    Sigdel, S.6    Park, J.-H.7    Haw, J.-R.8    Lee, J.-K.9
  • 79
    • 0025063286 scopus 로고
    • A radical-chemical route to acetyl-CoA: the anaerobically induced pyruvate formate-lyase system of Escherichia coli
    • COI: 1:STN:280:DyaK3M%2FmsVSrsA%3D%3D, PID: 2248795
    • Knappe J, Sawers G (1990) A radical-chemical route to acetyl-CoA: the anaerobically induced pyruvate formate-lyase system of Escherichia coli. FEMS Microbiol Rev 6:383–398
    • (1990) FEMS Microbiol Rev , vol.6 , pp. 383-398
    • Knappe, J.1    Sawers, G.2
  • 80
    • 84939213871 scopus 로고    scopus 로고
    • Changes in the acetylome and succinylome of Bacillus subtilis in response to carbon source
    • PID: 26098117
    • Kosono S, Tamura M, Suzuki S, Kawamura Y, Yoshida A, Nishiyama M, Yoshida M (2015) Changes in the acetylome and succinylome of Bacillus subtilis in response to carbon source. PLoS One 10:e0131169. doi:10.1371/journal.pone.0131169
    • (2015) PLoS One , vol.10
    • Kosono, S.1    Tamura, M.2    Suzuki, S.3    Kawamura, Y.4    Yoshida, A.5    Nishiyama, M.6    Yoshida, M.7
  • 81
    • 84920194778 scopus 로고    scopus 로고
    • Microbial acetyl-CoA metabolism and metabolic engineering
    • COI: 1:CAS:528:DC%2BC2cXitV2gurzF, PID: 25485951
    • Krivoruchko A, Zhang Y, Siewers V, Chen Y, Nielsen J (2015) Microbial acetyl-CoA metabolism and metabolic engineering. Metab Eng 28:28–42. doi:10.1016/j.ymben.2014.11.009
    • (2015) Metab Eng , vol.28 , pp. 28-42
    • Krivoruchko, A.1    Zhang, Y.2    Siewers, V.3    Chen, Y.4    Nielsen, J.5
  • 84
    • 0033621553 scopus 로고    scopus 로고
    • 70 is the principal sigma factor responsible for transcription of acs, which encodes acetyl coenzyme A synthetase in Escherichia coli
    • COI: 1:CAS:528:DC%2BD3cXivFSltA%3D%3D, PID: 10629211
    • 70 is the principal sigma factor responsible for transcription of acs, which encodes acetyl coenzyme A synthetase in Escherichia coli. J Bacteriol 182:551–554
    • (2000) J Bacteriol , vol.182 , pp. 551-554
    • Kumari, S.1    Simel, E.J.2    Wolfe, A.J.3
  • 85
    • 0017568342 scopus 로고
    • Influence of glucose and dissolved oxygen concentrations on yields of Escherichia coli B in dialysis culture
    • COI: 1:CAS:528:DyaE1cXhtleit7o%3D, PID: 340608
    • Landwall P, Holme T (1977) Influence of glucose and dissolved oxygen concentrations on yields of Escherichia coli B in dialysis culture. J Gen Microbiol 103:353–358
    • (1977) J Gen Microbiol , vol.103 , pp. 353-358
    • Landwall, P.1    Holme, T.2
  • 86
    • 0027381022 scopus 로고
    • High cell density cultivation of Escherichia coli W using sucrose as a carbon source
    • COI: 1:CAS:528:DyaK3sXms12isrk%3D
    • Lee SY, Chang HN (1993) High cell density cultivation of Escherichia coli W using sucrose as a carbon source. Biotechnol Lett 15:971–974. doi:10.1007/BF00131766
    • (1993) Biotechnol Lett , vol.15 , pp. 971-974
    • Lee, S.Y.1    Chang, H.N.2
  • 87
    • 84899525935 scopus 로고    scopus 로고
    • The metabolic potential of Escherichia coli BL21 in defined and rich medium
    • Li Z, Nimtz M, Rinas U (2014) The metabolic potential of Escherichia coli BL21 in defined and rich medium. Microb Cell Factories 13:45. doi:10.1186/1475-2859-13-45
    • (2014) Microb Cell Factories , vol.13 , pp. 45
    • Li, Z.1    Nimtz, M.2    Rinas, U.3
  • 88
    • 84866368518 scopus 로고    scopus 로고
    • Inhibition of acetyl phosphate-dependent transcription by an acetylatable lysine on RNA polymerase
    • COI: 1:CAS:528:DC%2BC38XhtlGgt7zL, PID: 22829598
    • Lima BP, Thanh Huyen TT, Bäsell K, Becher D, Antelmann H, Wolfe AJ (2012) Inhibition of acetyl phosphate-dependent transcription by an acetylatable lysine on RNA polymerase. J Biol Chem 287:32147–32160. doi:10.1074/jbc.M112.365502
    • (2012) J Biol Chem , vol.287 , pp. 32147-32160
    • Lima, B.P.1    Thanh Huyen, T.T.2    Bäsell, K.3    Becher, D.4    Antelmann, H.5    Wolfe, A.J.6
  • 89
    • 33746718715 scopus 로고    scopus 로고
    • Acetyl-CoA synthetase overexpression in Escherichia coli demonstrates more efficient acetate assimilation and lower acetate accumulation: a potential tool in metabolic engineering
    • COI: 1:CAS:528:DC%2BD28Xns1Sms7w%3D, PID: 16496143
    • Lin H, Castro N, Bennett G, San K-Y (2006) Acetyl-CoA synthetase overexpression in Escherichia coli demonstrates more efficient acetate assimilation and lower acetate accumulation: a potential tool in metabolic engineering. Appl Microbiol Biotechnol 71:870–874. doi:10.1007/s00253-005-0230-4
    • (2006) Appl Microbiol Biotechnol , vol.71 , pp. 870-874
    • Lin, H.1    Castro, N.2    Bennett, G.3    San, K.-Y.4
  • 91
    • 84908608590 scopus 로고    scopus 로고
    • The gut microbiota, bacterial metabolites and colorectal cancer
    • COI: 1:CAS:528:DC%2BC2cXhsFKms7bL, PID: 25198138
    • Louis P, Hold GL, Flint HJ (2014) The gut microbiota, bacterial metabolites and colorectal cancer. Nat Rev Microbiol 12:661–672. doi:10.1038/nrmicro3344
    • (2014) Nat Rev Microbiol , vol.12 , pp. 661-672
    • Louis, P.1    Hold, G.L.2    Flint, H.J.3
  • 92
    • 78149470831 scopus 로고    scopus 로고
    • Comparison of 61 sequenced Escherichia coli genomes
    • COI: 1:CAS:528:DC%2BC3cXhtlyrsrbO, PID: 20623278
    • Lukjancenko O, Wassenaar TM, Ussery DW (2010) Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol 60:708–720. doi:10.1007/s00248-010-9717-3
    • (2010) Microb Ecol , vol.60 , pp. 708-720
    • Lukjancenko, O.1    Wassenaar, T.M.2    Ussery, D.W.3
  • 93
    • 84879544113 scopus 로고    scopus 로고
    • Acetate metabolism and Escherichia coli biofilm: new approaches to an old problem
    • COI: 1:CAS:528:DC%2BC3sXhtFOqsL7N, PID: 23651469
    • Lynnes T, Prüss BM, Samanta P (2013) Acetate metabolism and Escherichia coli biofilm: new approaches to an old problem. FEMS Microbiol Lett 344:95–103. doi:10.1111/1574-6968.12174
    • (2013) FEMS Microbiol Lett , vol.344 , pp. 95-103
    • Lynnes, T.1    Prüss, B.M.2    Samanta, P.3
  • 94
    • 79960318555 scopus 로고    scopus 로고
    • Protein acetylation in prokaryotes increases stress resistance
    • COI: 1:CAS:528:DC%2BC3MXptVyqtLk%3D, PID: 21703240
    • Ma Q, Wood TK (2011) Protein acetylation in prokaryotes increases stress resistance. Biochem Biophys Res Commun 410:846–851. doi:10.1016/j.bbrc.2011.06.076
    • (2011) Biochem Biophys Res Commun , vol.410 , pp. 846-851
    • Ma, Q.1    Wood, T.K.2
  • 95
    • 0026586542 scopus 로고
    • Comparison of fermentation reactions in different regions of the human colon
    • COI: 1:STN:280:DyaK387ns1Wisg%3D%3D, PID: 1541601
    • Macfarlane GT, Gibson GR, Cummings JH (1992) Comparison of fermentation reactions in different regions of the human colon. J Appl Bacteriol 72:57–64
    • (1992) J Appl Bacteriol , vol.72 , pp. 57-64
    • Macfarlane, G.T.1    Gibson, G.R.2    Cummings, J.H.3
  • 96
    • 0020059725 scopus 로고
    • Genetic regulation of the glyoxylate shunt in Escherichia coli K-12
    • Maloy SR, Nunn WD (1982) Genetic regulation of the glyoxylate shunt in Escherichia coli K-12. J Bacteriol 49(1):173–180
    • (1982) J Bacteriol , vol.49 , Issue.1 , pp. 173-180
    • Maloy, S.R.1    Nunn, W.D.2
  • 97
    • 84881323927 scopus 로고    scopus 로고
    • A comparative analysis of industrial Escherichia coli K-12 and B strains in high-glucose batch cultivations on process-, transcriptome- and proteome level
    • COI: 1:CAS:528:DC%2BC3sXhtlajsLbI, PID: 23950949
    • Marisch K, Bayer K, Scharl T, Mairhofer J, Krempl PM, Hummel K, Razzazi-Fazeli E, Striedner G (2013) A comparative analysis of industrial Escherichia coli K-12 and B strains in high-glucose batch cultivations on process-, transcriptome- and proteome level. PLoS One 8:e70516. doi:10.1371/journal.pone.0070516
    • (2013) PLoS One , vol.8
    • Marisch, K.1    Bayer, K.2    Scharl, T.3    Mairhofer, J.4    Krempl, P.M.5    Hummel, K.6    Razzazi-Fazeli, E.7    Striedner, G.8
  • 98
    • 84907587733 scopus 로고    scopus 로고
    • LsrF, a coenzyme A-dependent thiolase, catalyzes the terminal step in processing the quorum sensing signal autoinducer-2
    • COI: 1:CAS:528:DC%2BC2cXhsFCisbnF, PID: 25225400
    • Marques JC, Oh IK, Ly DC, Lamosa P, Ventura MR, Miller ST, Xavier KB (2014) LsrF, a coenzyme A-dependent thiolase, catalyzes the terminal step in processing the quorum sensing signal autoinducer-2. Proc Natl Acad Sci U S A 111:14235–14240. doi:10.1073/pnas.1408691111
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 14235-14240
    • Marques, J.C.1    Oh, I.K.2    Ly, D.C.3    Lamosa, P.4    Ventura, M.R.5    Miller, S.T.6    Xavier, K.B.7
  • 99
    • 84890290025 scopus 로고    scopus 로고
    • Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
    • COI: 1:CAS:528:DC%2BC3sXhvFKmsL3K, PID: 24277855
    • Monk JM, Charusanti P, Aziz RK, Lerman JA, Premyodhin N, Orth JD, Feist AM, Palsson BØ (2013) Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proc Natl Acad Sci U S A 110:20338–20343. doi:10.1073/pnas.1307797110
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 20338-20343
    • Monk, J.M.1    Charusanti, P.2    Aziz, R.K.3    Lerman, J.A.4    Premyodhin, N.5    Orth, J.D.6    Feist, A.M.7    Palsson, B.Ø.8
  • 100
    • 84959440461 scopus 로고    scopus 로고
    • The post-transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis of Escherichia coli
    • COI: 1:CAS:528:DC%2BC28Xjt1yrurs%3D, PID: 26833659
    • Morin M, Ropers D, Letisse F, Laguerre S, Portais J-C, Cocaign-Bousquet M, Enjalbert B (2016) The post-transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis of Escherichia coli. Mol Microbiol 100:686–700. doi:10.1111/mmi.13343
    • (2016) Mol Microbiol , vol.100 , pp. 686-700
    • Morin, M.1    Ropers, D.2    Letisse, F.3    Laguerre, S.4    Portais, J.-C.5    Cocaign-Bousquet, M.6    Enjalbert, B.7
  • 101
    • 77955285819 scopus 로고    scopus 로고
    • cAMP-regulated protein lysine acetylases in mycobacteria
    • COI: 1:CAS:528:DC%2BC3cXpsFemsr8%3D, PID: 20507997
    • Nambi S, Basu N, Visweswariah S (2010) cAMP-regulated protein lysine acetylases in mycobacteria. J Biol Chem 285:24313–24323. doi:10.1074/jbc.M110.118398
    • (2010) J Biol Chem , vol.285 , pp. 24313-24323
    • Nambi, S.1    Basu, N.2    Visweswariah, S.3
  • 102
    • 84941786819 scopus 로고    scopus 로고
    • Constitutive expression of the sRNA GadY decreases acetate production and improves E. coli growth
    • Negrete A, Shiloach J (2015) Constitutive expression of the sRNA GadY decreases acetate production and improves E. coli growth. Microb Cell Factories 14:148. doi:10.1186/s12934-015-0334-1
    • (2015) Microb Cell Factories , vol.14 , pp. 148
    • Negrete, A.1    Shiloach, J.2
  • 103
    • 84872383524 scopus 로고    scopus 로고
    • Reducing acetate excretion from E. coli K-12 by over-expressing the small RNA SgrS
    • COI: 1:CAS:528:DC%2BC3sXovVyisw%3D%3D
    • Negrete A, Majdalani N, Phue J-N, Shiloach J (2013) Reducing acetate excretion from E. coli K-12 by over-expressing the small RNA SgrS. New Biotechnol 30:269–273. doi:10.1016/j.nbt.2011.11.007
    • (2013) New Biotechnol , vol.30 , pp. 269-273
    • Negrete, A.1    Majdalani, N.2    Phue, J.-N.3    Shiloach, J.4
  • 104
    • 84903646697 scopus 로고    scopus 로고
    • Highly efficient L-lactate production using engineered Escherichia coli with dissimilar temperature optima for L-lactate formation and cell growth
    • Niu D, Tian K, Prior BA, Wang M, Wang Z, Lu F, Singh S (2014) Highly efficient L-lactate production using engineered Escherichia coli with dissimilar temperature optima for L-lactate formation and cell growth. Microb Cell Factories 13:78. doi:10.1186/1475-2859-13-78
    • (2014) Microb Cell Factories , vol.13 , pp. 78
    • Niu, D.1    Tian, K.2    Prior, B.A.3    Wang, M.4    Wang, Z.5    Lu, F.6    Singh, S.7
  • 106
    • 0023102352 scopus 로고
    • Physiological constraints in increasing biomass concentration of Escherichia coli B in fed-batch culture
    • COI: 1:CAS:528:DyaL2sXhsFCktbw%3D
    • Pan JG, Rhee JS, Lebeault JM (1987) Physiological constraints in increasing biomass concentration of Escherichia coli B in fed-batch culture. Biotechnol Lett 9:89–94. doi:10.1007/BF01032744
    • (1987) Biotechnol Lett , vol.9 , pp. 89-94
    • Pan, J.G.1    Rhee, J.S.2    Lebeault, J.M.3
  • 107
    • 0031848112 scopus 로고    scopus 로고
    • Pathogenesis and diagnosis of Shiga toxin-producing Escherichia coli infections
    • COI: 1:STN:280:DyaK1czjtlKlug%3D%3D, PID: 9665978
    • Paton JC, Paton AW (1998) Pathogenesis and diagnosis of Shiga toxin-producing Escherichia coli infections. Clin Microbiol Rev 11:450–479
    • (1998) Clin Microbiol Rev , vol.11 , pp. 450-479
    • Paton, J.C.1    Paton, A.W.2
  • 108
    • 84901685293 scopus 로고    scopus 로고
    • Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coli
    • PID: 24633370
    • Peebo K, Valgepea K, Nahku R, Riis G, Oun M, Adamberg K, Vilu R (2014) Coordinated activation of PTA-ACS and TCA cycles strongly reduces overflow metabolism of acetate in Escherichia coli. Appl Microbiol Biotechnol. doi:10.1007/s00253-014-5613-y
    • (2014) Appl Microbiol Biotechnol
    • Peebo, K.1    Valgepea, K.2    Nahku, R.3    Riis, G.4    Oun, M.5    Adamberg, K.6    Vilu, R.7
  • 109
    • 84925014516 scopus 로고    scopus 로고
    • Proteome reallocation in Escherichia coli with increasing specific growth rate
    • COI: 1:CAS:528:DC%2BC2MXivVSgu7g%3D, PID: 25712329
    • Peebo K, Valgepea K, Maser A, Nahku R, Adamberg K, Vilu R (2015) Proteome reallocation in Escherichia coli with increasing specific growth rate. Mol BioSyst 11:1184–1193. doi:10.1039/c4mb00721b
    • (2015) Mol BioSyst , vol.11 , pp. 1184-1193
    • Peebo, K.1    Valgepea, K.2    Maser, A.3    Nahku, R.4    Adamberg, K.5    Vilu, R.6
  • 110
    • 17644369246 scopus 로고    scopus 로고
    • Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli
    • COI: 1:CAS:528:DC%2BD2MXjvVGqtb4%3D, PID: 15838044
    • Perrenoud A, Sauer U (2005) Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli. J Bacteriol 187:3171–3179
    • (2005) J Bacteriol , vol.187 , pp. 3171-3179
    • Perrenoud, A.1    Sauer, U.2
  • 111
    • 1842582933 scopus 로고    scopus 로고
    • Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109)
    • COI: 1:CAS:528:DC%2BD2cXivVKms7g%3D, PID: 15063611
    • Phue J-N, Shiloach J (2004) Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109). J Biotechnol 109:21–30. doi:10.1016/j.jbiotec.2003.10.038
    • (2004) J Biotechnol , vol.109 , pp. 21-30
    • Phue, J.-N.1    Shiloach, J.2
  • 114
    • 84962421717 scopus 로고    scopus 로고
    • Acetylation of lysine 201 inhibits the DNA-binding ability of PhoP to regulate Salmonella virulence
    • PID: 26943369
    • Ren J, Sang Y, Tan Y, Tao J, Ni J, Liu S, Fan X, Zhao W, Lu J, Wu W, Yao Y-F (2016) Acetylation of lysine 201 inhibits the DNA-binding ability of PhoP to regulate Salmonella virulence. PLoS Pathog 12:e1005458. doi:10.1371/journal.ppat.1005458
    • (2016) PLoS Pathog , vol.12
    • Ren, J.1    Sang, Y.2    Tan, Y.3    Tao, J.4    Ni, J.5    Liu, S.6    Fan, X.7    Zhao, W.8    Lu, J.9    Wu, W.10    Yao, Y.-F.11
  • 115
    • 84857913968 scopus 로고    scopus 로고
    • Acetate scavenging activity in Escherichia coli: interplay of acetyl-CoA synthetase and the PEP-glyoxylate cycle in chemostat cultures
    • Renilla S, Bernal V, Fuhrer T, Castaño-Cerezo S, Pastor JM, Iborra JL, Sauer U, Cánovas M (2012) Acetate scavenging activity in Escherichia coli: interplay of acetyl-CoA synthetase and the PEP-glyoxylate cycle in chemostat cultures. Appl Microbiol Biotechnol 95:2109–2124. doi:10.1007/s00253-011-3536-4
    • (2012) Appl Microbiol Biotechnol , vol.95 , pp. 2109-2124
    • Renilla, S.1    Bernal, V.2    Fuhrer, T.3    Castaño-Cerezo, S.4    Pastor, J.M.5    Iborra, J.L.6    Sauer, U.7    Cánovas, M.8
  • 117
    • 84978720940 scopus 로고    scopus 로고
    • Protein acetylation is involved in Salmonella enterica Serovar typhimurium virulence
    • PID: 26810370
    • Sang Y, Ren J, Ni J, Tao J, Lu J, Yao Y-F (2016) Protein acetylation is involved in Salmonella enterica Serovar typhimurium virulence. J Infect Dis. doi:10.1093/infdis/jiw028
    • (2016) J Infect Dis
    • Sang, Y.1    Ren, J.2    Ni, J.3    Tao, J.4    Lu, J.5    Yao, Y.-F.6
  • 120
    • 34447326690 scopus 로고    scopus 로고
    • The multiple roles of CRP at the complex acs promoter depend on activation region 2 and IHF
    • COI: 1:CAS:528:DC%2BD2sXovFamtrY%3D, PID: 17630973
    • Sclavi B, Beatty CM, Thach DS, Fredericks CE, Buckle M, Wolfe AJ (2007) The multiple roles of CRP at the complex acs promoter depend on activation region 2 and IHF. Mol Microbiol 65:425–440. doi:10.1111/j.1365-2958.2007.05797.x
    • (2007) Mol Microbiol , vol.65 , pp. 425-440
    • Sclavi, B.1    Beatty, C.M.2    Thach, D.S.3    Fredericks, C.E.4    Buckle, M.5    Wolfe, A.J.6
  • 121
    • 78449268845 scopus 로고    scopus 로고
    • Interdependence of cell growth and gene expression: origins and consequences
    • COI: 1:CAS:528:DC%2BC3cXhsVahurvJ, PID: 21097934
    • Scott M, Gunderson CW, Mateescu EM, Zhang Z, Hwa T (2010) Interdependence of cell growth and gene expression: origins and consequences. Science 330:1099–1102. doi:10.1126/science.1192588
    • (2010) Science , vol.330 , pp. 1099-1102
    • Scott, M.1    Gunderson, C.W.2    Mateescu, E.M.3    Zhang, Z.4    Hwa, T.5
  • 122
    • 27744565164 scopus 로고    scopus 로고
    • Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and glycolysis pathway in Escherichia coli under growth conditions
    • COI: 1:CAS:528:DC%2BD2MXhtVygsr7N, PID: 15988767
    • Shalel-Levanon S, San KY, Bennett GN (2005) Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and glycolysis pathway in Escherichia coli under growth conditions. Biotechnol Bioeng 92:147–159
    • (2005) Biotechnol Bioeng , vol.92 , pp. 147-159
    • Shalel-Levanon, S.1    San, K.Y.2    Bennett, G.N.3
  • 123
    • 19544381068 scopus 로고    scopus 로고
    • Growing E. coli to high cell density—a historical perspective on method development
    • COI: 1:CAS:528:DC%2BD2MXks1Wntbg%3D, PID: 15899573
    • Shiloach J, Fass R (2005) Growing E. coli to high cell density—a historical perspective on method development. Biotechnol Adv 23:345–357
    • (2005) Biotechnol Adv , vol.23 , pp. 345-357
    • Shiloach, J.1    Fass, R.2
  • 124
    • 13344294402 scopus 로고    scopus 로고
    • Effect of glucose supply strategy on acetate accumulation, growth, and recombinant protein production by Escherichia coli BL21 (lambda DE3) and Escherichia coli JM109
    • COI: 1:CAS:528:DyaK28XptFCqsQ%3D%3D, PID: 18623597
    • Shiloach J, Kaufman J, Guillard AS, Fass R (1996) Effect of glucose supply strategy on acetate accumulation, growth, and recombinant protein production by Escherichia coli BL21 (lambda DE3) and Escherichia coli JM109. Biotechnol Bioeng 49:421–428
    • (1996) Biotechnol Bioeng , vol.49 , pp. 421-428
    • Shiloach, J.1    Kaufman, J.2    Guillard, A.S.3    Fass, R.4
  • 125
    • 77950630135 scopus 로고    scopus 로고
    • Analyzing metabolic variations in different bacterial strains, historical perspectives and current trends—example E. coli
    • COI: 1:CAS:528:DC%2BC3cXjslSjtLk%3D, PID: 20116994
    • Shiloach J, Reshamwala S, Noronha SB, Negrete A (2010) Analyzing metabolic variations in different bacterial strains, historical perspectives and current trends—example E. coli. Curr Opin Biotechnol 21:21–26
    • (2010) Curr Opin Biotechnol , vol.21 , pp. 21-26
    • Shiloach, J.1    Reshamwala, S.2    Noronha, S.B.3    Negrete, A.4
  • 126
    • 0029130181 scopus 로고
    • Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR
    • COI: 1:CAS:528:DyaK2MXnsVGru78%3D, PID: 7642497
    • Shin S, Park C (1995) Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR. J Bacteriol 177:4696–4702
    • (1995) J Bacteriol , vol.177 , pp. 4696-4702
    • Shin, S.1    Park, C.2
  • 127
    • 0031034211 scopus 로고    scopus 로고
    • Involvement of iclR and rpoS in the induction of acs, the gene for acetyl coenzyme A synthetase of Escherichia coli K-12
    • Shin S, Song SG, Lee DS, Pan JG, Park C (1997) Involvement of iclR and rpoS in the induction of acs, the gene for acetyl coenzyme A synthetase of Escherichia coli K-12. FEMS Microbiol Lett 146(1):103–108
    • (1997) FEMS Microbiol Lett , vol.146 , Issue.1 , pp. 103-108
    • Shin, S.1    Song, S.G.2    Lee, D.S.3    Pan, J.G.4    Park, C.5
  • 128
    • 84883389182 scopus 로고    scopus 로고
    • Understanding the interactions between bacteria in the human gut through metabolic modeling
    • PID: 23982459
    • Shoaie S, Karlsson F, Mardinoglu A, Nookaew I, Bordel S, Nielsen J (2013) Understanding the interactions between bacteria in the human gut through metabolic modeling. Sci Rep 3:2532. doi:10.1038/srep02532
    • (2013) Sci Rep , vol.3 , pp. 2532
    • Shoaie, S.1    Karlsson, F.2    Mardinoglu, A.3    Nookaew, I.4    Bordel, S.5    Nielsen, J.6
  • 129
    • 79959678698 scopus 로고    scopus 로고
    • The role of Cra in regulating acetate excretion and osmotic tolerance in E. coli K-12 and E. coli B at high density growth
    • COI: 1:CAS:528:DC%2BC3MXovVaju74%3D
    • Son Y-J, Phue J-N, Trinh LB, Lee SJ, Shiloach J (2011) The role of Cra in regulating acetate excretion and osmotic tolerance in E. coli K-12 and E. coli B at high density growth. Microb Cell Factories 10:52. doi:10.1186/1475-2859-10-52
    • (2011) Microb Cell Factories , vol.10 , pp. 52
    • Son, Y.-J.1    Phue, J.-N.2    Trinh, L.B.3    Lee, S.J.4    Shiloach, J.5
  • 130
    • 0028884775 scopus 로고
    • Genetics of pentose-phosphate pathway enzymes of Escherichia coli K-12
    • COI: 1:CAS:528:DyaK2MXhtVSmtbjM, PID: 8572885
    • Sprenger GA (1995) Genetics of pentose-phosphate pathway enzymes of Escherichia coli K-12. Arch Microbiol 164:324–330
    • (1995) Arch Microbiol , vol.164 , pp. 324-330
    • Sprenger, G.A.1
  • 131
    • 4344570067 scopus 로고    scopus 로고
    • Acetyl-coenzyme A synthetase (AMP forming)
    • Starai VJ, Escalante-Semerena JC (2004) Acetyl-coenzyme A synthetase (AMP forming). Cell Mol Life Sci 61(16):2020–2030
    • (2004) Cell Mol Life Sci , vol.61 , Issue.16 , pp. 2020-2030
    • Starai, V.J.1    Escalante-Semerena, J.C.2
  • 132
    • 0347457075 scopus 로고    scopus 로고
    • Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine
    • COI: 1:CAS:528:DC%2BD38Xps1Sju70%3D, PID: 12493915
    • Starai VJ, Celic I, Cole RN, Boeke JD, Escalante-Semerena JC (2002) Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine. Science 298:2390–2392. doi:10.1126/science.1077650
    • (2002) Science , vol.298 , pp. 2390-2392
    • Starai, V.J.1    Celic, I.2    Cole, R.N.3    Boeke, J.D.4    Escalante-Semerena, J.C.5
  • 133
    • 1842610541 scopus 로고    scopus 로고
    • A link between transcription and intermediary metabolism: a role for Sir2 in the control of acetyl-coenzyme A synthetase
    • COI: 1:CAS:528:DC%2BD2cXivVKrtr4%3D, PID: 15063846
    • Starai VJ, Takahashi H, Boeke JD, Escalante-Semerena JC (2004) A link between transcription and intermediary metabolism: a role for Sir2 in the control of acetyl-coenzyme A synthetase. Curr Opin Microbiol 7:115–119
    • (2004) Curr Opin Microbiol , vol.7 , pp. 115-119
    • Starai, V.J.1    Takahashi, H.2    Boeke, J.D.3    Escalante-Semerena, J.C.4
  • 134
    • 70449524297 scopus 로고    scopus 로고
    • Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes
    • COI: 1:CAS:528:DC%2BD1MXhsVKnsbrP, PID: 19765592
    • Studier FW, Daegelen P, Lenski RE, Maslov S, Kim JF (2009) Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes. J Mol Biol 394:653–680. doi:10.1016/j.jmb.2009.09.021
    • (2009) J Mol Biol , vol.394 , pp. 653-680
    • Studier, F.W.1    Daegelen, P.2    Lenski, R.E.3    Maslov, S.4    Kim, J.F.5
  • 135
    • 85011301149 scopus 로고    scopus 로고
    • Virulence and fitness determinants of uropathogenic Escherichia coli
    • Subashchandrabose S, Mobley HLT (2015) Virulence and fitness determinants of uropathogenic Escherichia coli. Microbiol Spectr 3(4). doi: 10.1128/microbiolspec.UTI-0015-2012
    • (2015) Microbiol Spectr , vol.3 , Issue.4
    • Subashchandrabose, S.1    Mobley, H.L.T.2
  • 136
    • 0025355399 scopus 로고
    • Regulation of the glyoxylate bypass operon: cloning and characterization of iclR
    • Sunnarborg A, Klumpp D, Chung T, LaPorte DC (1990) Regulation of the glyoxylate bypass operon: cloning and characterization of iclR. J Bacteriol 172(5):2642–2649
    • (1990) J Bacteriol , vol.172 , Issue.5 , pp. 2642-2649
    • Sunnarborg, A.1    Klumpp, D.2    Chung, T.3    LaPorte, D.C.4
  • 137
    • 84857113471 scopus 로고    scopus 로고
    • ε-lysine acetyltransferase involved in carbon and energy metabolism
    • PID: 22010215
    • ε-lysine acetyltransferase involved in carbon and energy metabolism. MBio. doi:10.1128/mBio.00216-11
    • (2011) MBio.
    • Thao, S.1    Escalante-Semerena, J.C.2
  • 138
    • 79251477191 scopus 로고    scopus 로고
    • Nε-lysine acetylation of a bacterial transcription factor inhibits Its DNA-binding activity
    • COI: 1:CAS:528:DC%2BC3MXms1GitQ%3D%3D, PID: 21217812
    • Thao S, Chen C-S, Zhu H, Escalante-Semerena JC (2010) Nε-lysine acetylation of a bacterial transcription factor inhibits Its DNA-binding activity. PLoS One 5:e15123. doi:10.1371/journal.pone.0015123
    • (2010) PLoS One , vol.5
    • Thao, S.1    Chen, C.-S.2    Zhu, H.3    Escalante-Semerena, J.C.4
  • 140
    • 84866168894 scopus 로고    scopus 로고
    • Functional interactions between the gut microbiota and host metabolism
    • COI: 1:CAS:528:DC%2BC38XhtleqsrzI, PID: 22972297
    • Tremaroli V, Bäckhed F (2012) Functional interactions between the gut microbiota and host metabolism. Nature 489:242–249. doi:10.1038/nature11552
    • (2012) Nature , vol.489 , pp. 242-249
    • Tremaroli, V.1    Bäckhed, F.2
  • 143
    • 78649511651 scopus 로고    scopus 로고
    • Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase
    • COI: 1:CAS:528:DC%2BC3cXhsFOgsbnJ, PID: 21122111
    • Valgepea K, Adamberg K, Nahku R, Lahtvee P-J, Arike L, Vilu R (2010) Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase. BMC Syst Biol 4:166
    • (2010) BMC Syst Biol , vol.4 , pp. 166
    • Valgepea, K.1    Adamberg, K.2    Nahku, R.3    Lahtvee, P.-J.4    Arike, L.5    Vilu, R.6
  • 144
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
    • COI: 1:CAS:528:DyaK2cXmt1Kis7Y%3D, PID: 7986045
    • Varma A, Palsson BO (1994) Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl Environ Microbiol 60:3724–3731
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3724-3731
    • Varma, A.1    Palsson, B.O.2
  • 145
    • 33646578756 scopus 로고    scopus 로고
    • Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio
    • COI: 1:CAS:528:DC%2BD28XkvFWjtrY%3D, PID: 16672514
    • Vemuri GN, Altman E, Sangurdekar DP, Khodursky AB, Eiteman MA (2006) Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio. Appl Environ Microbiol 72:3653–3661. doi:10.1128/aem.72.5.3653-3661.2006
    • (2006) Appl Environ Microbiol , vol.72 , pp. 3653-3661
    • Vemuri, G.N.1    Altman, E.2    Sangurdekar, D.P.3    Khodursky, A.B.4    Eiteman, M.A.5
  • 146
    • 79953789350 scopus 로고    scopus 로고
    • Effect of iclR and arcA knockouts on biomass formation and metabolic fluxes in Escherichia coli K-12 and its implications on understanding the metabolism of Escherichia coli BL21 (DE3)
    • COI: 1:CAS:528:DC%2BC3MXltVWqsLo%3D, PID: 21481254
    • Waegeman H, Beauprez J, Moens H, Maertens J, De Mey M, Foulquie-Moreno M, Heijnen J, Charlier D, Soetaert W (2011) Effect of iclR and arcA knockouts on biomass formation and metabolic fluxes in Escherichia coli K-12 and its implications on understanding the metabolism of Escherichia coli BL21 (DE3). BMC Microbiol 11:70
    • (2011) BMC Microbiol , vol.11 , pp. 70
    • Waegeman, H.1    Beauprez, J.2    Moens, H.3    Maertens, J.4    De Mey, M.5    Foulquie-Moreno, M.6    Heijnen, J.7    Charlier, D.8    Soetaert, W.9
  • 147
    • 84856224805 scopus 로고    scopus 로고
    • Effect of iclR and arcA deletions on physiology and metabolic fluxes in Escherichia coli BL21 (DE3)
    • COI: 1:CAS:528:DC%2BC38Xhtlyrtrw%3D, PID: 22009573
    • Waegeman H, Maertens J, Beauprez J, De Mey M, Soetaert W (2012) Effect of iclR and arcA deletions on physiology and metabolic fluxes in Escherichia coli BL21 (DE3). Biotechnol Lett 34:329–337. doi:10.1007/s10529-011-0774-6
    • (2012) Biotechnol Lett , vol.34 , pp. 329-337
    • Waegeman, H.1    Maertens, J.2    Beauprez, J.3    De Mey, M.4    Soetaert, W.5
  • 148
    • 84872369992 scopus 로고    scopus 로고
    • Increasing recombinant protein production in Escherichia coli K12 through metabolic engineering
    • COI: 1:CAS:528:DC%2BC3sXovFCgtA%3D%3D
    • Waegeman H, De Lausnay S, Beauprez J, Maertens J, De Mey M, Soetaert W (2013) Increasing recombinant protein production in Escherichia coli K12 through metabolic engineering. New Biotechnol 30:255–261. doi:10.1016/j.nbt.2011.11.008
    • (2013) New Biotechnol , vol.30 , pp. 255-261
    • Waegeman, H.1    De Lausnay, S.2    Beauprez, J.3    Maertens, J.4    De Mey, M.5    Soetaert, W.6
  • 149
    • 0021149774 scopus 로고
    • Determination of flux through the branch point of two metabolic cycles. The tricarboxylic acid cycle and the glyoxylate shunt
    • Walsh K, Koshland DE Jr (1984) Determination of flux through the branch point of two metabolic cycles. The tricarboxylic acid cycle and the glyoxylate shunt. J Biol Chem 259(15):9646–9654
    • (1984) J Biol Chem , vol.259 , Issue.15 , pp. 9646-9654
    • Walsh, K.1    Koshland, D.E.2
  • 150
    • 0034090278 scopus 로고    scopus 로고
    • Global regulatory mutations in csrA and rpoS cause severe central carbon stress in Escherichia coli in the presence of acetate
    • COI: 1:CAS:528:DC%2BD3cXhsVGlt7k%3D, PID: 10692369
    • Wei B, Shin S, LaPorte D, Wolfe AJ, Romeo T (2000) Global regulatory mutations in csrA and rpoS cause severe central carbon stress in Escherichia coli in the presence of acetate. J Bacteriol 182:1632–1640
    • (2000) J Bacteriol , vol.182 , pp. 1632-1640
    • Wei, B.1    Shin, S.2    LaPorte, D.3    Wolfe, A.J.4    Romeo, T.5
  • 152
    • 84946488466 scopus 로고    scopus 로고
    • Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions
    • PID: 26358839
    • Weinert BT, Moustafa T, Iesmantavicius V, Zechner R, Choudhary C (2015) Analysis of acetylation stoichiometry suggests that SIRT3 repairs nonenzymatic acetylation lesions. EMBO J. doi:10.15252/embj.201591271
    • (2015) EMBO J
    • Weinert, B.T.1    Moustafa, T.2    Iesmantavicius, V.3    Zechner, R.4    Choudhary, C.5
  • 153
    • 14944368136 scopus 로고    scopus 로고
    • The acetate switch
    • COI: 1:CAS:528:DC%2BD2MXjtVOhtLw%3D, PID: 15755952
    • Wolfe AJ (2005) The acetate switch. Microbiol Mol Biol Rev 69:12–50
    • (2005) Microbiol Mol Biol Rev , vol.69 , pp. 12-50
    • Wolfe, A.J.1
  • 154
    • 84949662044 scopus 로고    scopus 로고
    • Bacterial protein acetylation: new discoveries unanswered questions
    • COI: 1:CAS:528:DC%2BC2MXhvF2rsrnL, PID: 26660885
    • Wolfe AJ (2016) Bacterial protein acetylation: new discoveries unanswered questions. Curr Genet 62(2):335–341. doi:10.1007/s00294-015-0552-4
    • (2016) Curr Genet , vol.62 , Issue.2 , pp. 335-341
    • Wolfe, A.J.1
  • 155
    • 39849097985 scopus 로고    scopus 로고
    • Reduction of acetate accumulation in Escherichia coli cultures for increased recombinant protein production
    • COI: 1:CAS:528:DC%2BD1cXjtVCjsr8%3D, PID: 18164227
    • Wong MS, Wu S, Causey TB, Bennett GN, San K-Y (2008) Reduction of acetate accumulation in Escherichia coli cultures for increased recombinant protein production. Metab Eng 10:97–108. doi:10.1016/j.ymben.2007.10.003
    • (2008) Metab Eng , vol.10 , pp. 97-108
    • Wong, M.S.1    Wu, S.2    Causey, T.B.3    Bennett, G.N.4    San, K.-Y.5
  • 156
    • 84881663369 scopus 로고    scopus 로고
    • Coordination of bacterial proteome with metabolism by cyclic AMP signalling
    • COI: 1:CAS:528:DC%2BC3sXht1Cgt7jK, PID: 23925119
    • You C, Okano H, Hui S, Zhang Z, Kim M, Gunderson CW, Wang Y-P, Lenz P, Yan D, Hwa T (2013) Coordination of bacterial proteome with metabolism by cyclic AMP signalling. Nature 500:301–306. doi:10.1038/nature12446
    • (2013) Nature , vol.500 , pp. 301-306
    • You, C.1    Okano, H.2    Hui, S.3    Zhang, Z.4    Kim, M.5    Gunderson, C.W.6    Wang, Y.-P.7    Lenz, P.8    Yan, D.9    Hwa, T.10
  • 157
    • 61649089277 scopus 로고    scopus 로고
    • Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli
    • COI: 1:CAS:528:DC%2BD1MXitV2lu7o%3D
    • Zhang J, Sprung R, Pei J, Tan X, Kim S, Zhu H, Liu C-F, Grishin NV, Zhao Y (2009) Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli. Mol Cell Prot 8:215–225
    • (2009) Mol Cell Prot , vol.8 , pp. 215-225
    • Zhang, J.1    Sprung, R.2    Pei, J.3    Tan, X.4    Kim, S.5    Zhu, H.6    Liu, C.-F.7    Grishin, N.V.8    Zhao, Y.9
  • 158
    • 1542298916 scopus 로고    scopus 로고
    • Structure and substrate binding properties of CobB, a Sir2 homolog protein deacetylase from Escherichia coli
    • COI: 1:CAS:528:DC%2BD2cXhvFSltbg%3D, PID: 15019790
    • Zhao K, Chai X, Marmorstein R (2004) Structure and substrate binding properties of CobB, a Sir2 homolog protein deacetylase from Escherichia coli. J Mol Biol 337:731–741
    • (2004) J Mol Biol , vol.337 , pp. 731-741
    • Zhao, K.1    Chai, X.2    Marmorstein, R.3
  • 159
    • 15244361841 scopus 로고    scopus 로고
    • Effect of a single-gene knockout on the metabolic regulation in Escherichia coli for D-lactate production under microaerobic condition
    • COI: 1:CAS:528:DC%2BD2MXisVCmu7Y%3D, PID: 15781419
    • Zhu J, Shimizu K, Zhu HF, Shimizu K (2005) Effect of a single-gene knockout on the metabolic regulation in Escherichia coli for D-lactate production under microaerobic condition. Metab Eng 7:104–115. doi:10.1016/j.ymben.2004.10.004
    • (2005) Metab Eng , vol.7 , pp. 104-115
    • Zhu, J.1    Shimizu, K.2    Zhu, H.F.3    Shimizu, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.