-
1
-
-
0032694976
-
Food-related illness and death in the United States
-
10511517
-
Food-related illness and death in the United States. PS Mead L Slutsker V Dietz LF McCaig JS Bresee C Shapiro PM Griffin RV Tauxe, Emerg Infect Dis 1999 5 607 625 10511517
-
(1999)
Emerg Infect Dis
, vol.5
, pp. 607-625
-
-
Mead, P.S.1
Slutsker, L.2
Dietz, V.3
McCaig, L.F.4
Bresee, J.S.5
Shapiro, C.6
Griffin, P.M.7
Tauxe, R.V.8
-
2
-
-
0031768381
-
Enteropathogenic and enterohaemorrhagic Escherichia coli: More subversive elements
-
10.1046/j.1365-2958.1998.01144.x. 9988469
-
Enteropathogenic and enterohaemorrhagic Escherichia coli: more subversive elements. G Frankel AD Phillips I Rosenshine G Dougan JB Kaper S Knutton, Mol Microbiol 1998 30 911 921 10.1046/j.1365-2958.1998.01144.x 9988469
-
(1998)
Mol Microbiol
, vol.30
, pp. 911-921
-
-
Frankel, G.1
Phillips, A.D.2
Rosenshine, I.3
Dougan, G.4
Kaper, J.B.5
Knutton, S.6
-
3
-
-
0036869942
-
Enteropathogenic and enterohemorrhagic Escherichia coli infections: Emerging themes in pathogenesis and prevention
-
12464970
-
Enteropathogenic and enterohemorrhagic Escherichia coli infections: emerging themes in pathogenesis and prevention. BA Vallance C Chan ML Robertson BB Finlay, Can J Gastroenterol 2002 16 771 778 12464970
-
(2002)
Can J Gastroenterol
, vol.16
, pp. 771-778
-
-
Vallance, B.A.1
Chan, C.2
Robertson, M.L.3
Finlay, B.B.4
-
4
-
-
0028945803
-
A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens
-
7878036. 10.1073/pnas.92.5.1664
-
A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens. TK McDaniel KG Jarvis MS Donnenberg JB Kaper, Proc Natl Acad Sci U S A 1995 92 1664 1668 7878036 10.1073/pnas.92.5.1664
-
(1995)
Proc Natl Acad Sci U S a
, vol.92
, pp. 1664-1668
-
-
McDaniel, T.K.1
Jarvis, K.G.2
Donnenberg, M.S.3
Kaper, J.B.4
-
5
-
-
0031848112
-
Pathogenesis and diagnosis of Shiga toxin-producing Escherichia coli infections
-
9665978
-
Pathogenesis and diagnosis of Shiga toxin-producing Escherichia coli infections. JC Paton AW Paton, Clin Microbiol Rev 1998 11 450 479 9665978
-
(1998)
Clin Microbiol Rev
, vol.11
, pp. 450-479
-
-
Paton, J.C.1
Paton, A.W.2
-
6
-
-
4644358200
-
Shiga toxin-encoding bacteriophages - Genomes in motion
-
10.1016/j.ijmm.2004.06.023. 15493821
-
Shiga toxin-encoding bacteriophages - genomes in motion. S Herold H Karch H Schmidt, Int J Med Microbiol 2004 294 115 121 10.1016/j.ijmm.2004.06.023 15493821
-
(2004)
Int J Med Microbiol
, vol.294
, pp. 115-121
-
-
Herold, S.1
Karch, H.2
Schmidt, H.3
-
7
-
-
0034813874
-
Shiga-toxin-converting bacteriophages
-
10.1016/S0923-2508(01)01249-9. 11686382
-
Shiga-toxin-converting bacteriophages. H Schmidt, Res Microbiol 2001 152 687 695 10.1016/S0923-2508(01)01249-9 11686382
-
(2001)
Res Microbiol
, vol.152
, pp. 687-695
-
-
Schmidt, H.1
-
8
-
-
1842508193
-
Pathogenic Escherichia coli
-
10.1038/nrmicro818. 15040260
-
Pathogenic Escherichia coli. JB Kaper JP Nataro HL Mobley, Nat Rev Microbiol 2004 2 123 140 10.1038/nrmicro818 15040260
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 123-140
-
-
Kaper, J.B.1
Nataro, J.P.2
Mobley, H.L.3
-
9
-
-
33645068847
-
A comparison of enteropathogenic and enterohaemorrhagic Escherichia coli pathogenesis
-
10.1111/j.1574-6968.2006.00119.x. 16448495
-
A comparison of enteropathogenic and enterohaemorrhagic Escherichia coli pathogenesis. KJ Spears AJ Roe DL Gally, FEMS Microbiol Lett 2006 255 187 202 10.1111/j.1574-6968.2006.00119.x 16448495
-
(2006)
FEMS Microbiol Lett
, vol.255
, pp. 187-202
-
-
Spears, K.J.1
Roe, A.J.2
Gally, D.L.3
-
10
-
-
33745221184
-
PpGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes
-
10.1111/j.1365-2958.2006.05217.x. 16824105
-
ppGpp with DksA controls gene expression in the locus of enterocyte effacement (LEE) pathogenicity island of enterohaemorrhagic Escherichia coli through activation of two virulence regulatory genes. N Nakanishi H Abe Y Ogura T Hayashi K Tashiro S Kuhara N Sugimoto T Tobe, Mol Microbiol 2006 61 194 205 10.1111/j.1365-2958.2006.05217.x 16824105
-
(2006)
Mol Microbiol
, vol.61
, pp. 194-205
-
-
Nakanishi, N.1
Abe, H.2
Ogura, Y.3
Hayashi, T.4
Tashiro, K.5
Kuhara, S.6
Sugimoto, N.7
Tobe, T.8
-
11
-
-
0036081273
-
Bicarbonate ion stimulates the expression of locus of enterocyte effacement-encoded genes in enterohemorrhagic Escherichia coli O157:H7
-
12065489. 10.1128/IAI.70.7.3500-3509.2002
-
Bicarbonate ion stimulates the expression of locus of enterocyte effacement-encoded genes in enterohemorrhagic Escherichia coli O157:H7. H Abe I Tatsuno T Tobe A Okutani C Sasakawa, Infect Immun 2002 70 3500 3509 12065489 10.1128/IAI.70.7.3500-3509.2002
-
(2002)
Infect Immun
, vol.70
, pp. 3500-3509
-
-
Abe, H.1
Tatsuno, I.2
Tobe, T.3
Okutani, A.4
Sasakawa, C.5
-
12
-
-
0033592919
-
Quorum sensing controls expression of the type III secretion gene transcription and protein secretion in enterohemorrhagic and enteropathogenic Escherichia coli
-
10611361. 10.1073/pnas.96.26.15196
-
Quorum sensing controls expression of the type III secretion gene transcription and protein secretion in enterohemorrhagic and enteropathogenic Escherichia coli. V Sperandio JL Mellies W Nguyen S Shin JB Kaper, Proc Natl Acad Sci U S A 1999 96 15196 15201 10611361 10.1073/pnas.96.26.15196
-
(1999)
Proc Natl Acad Sci U S a
, vol.96
, pp. 15196-15201
-
-
Sperandio, V.1
Mellies, J.L.2
Nguyen, W.3
Shin, S.4
Kaper, J.B.5
-
13
-
-
0035101012
-
Role for a phage promoter in Shiga toxin 2 expression from a pathogenic Escherichia coli strain
-
11222608. 10.1128/JB.183.6.2081-2085.2001
-
Role for a phage promoter in Shiga toxin 2 expression from a pathogenic Escherichia coli strain. PL Wagner MN Neely X Zhang DW Acheson MK Waldor DI Friedman, J Bacteriol 2001 183 2081 2085 11222608 10.1128/JB.183.6.2081-2085. 2001
-
(2001)
J Bacteriol
, vol.183
, pp. 2081-2085
-
-
Wagner, P.L.1
Neely, M.N.2
Zhang, X.3
Acheson, D.W.4
Waldor, M.K.5
Friedman, D.I.6
-
14
-
-
0036096415
-
Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli
-
10.1046/j.1365-2958.2002.02950.x. 12010491
-
Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli. PL Wagner J Livny MN Neely DW Acheson DI Friedman MK Waldor, Mol Microbiol 2002 44 957 970 10.1046/j.1365-2958.2002.02950.x 12010491
-
(2002)
Mol Microbiol
, vol.44
, pp. 957-970
-
-
Wagner, P.L.1
Livny, J.2
Neely, M.N.3
Acheson, D.W.4
Friedman, D.I.5
Waldor, M.K.6
-
15
-
-
0023631217
-
Iron regulation of Shiga-like toxin expression in Escherichia coli is mediated by the fur locus
-
3308853
-
Iron regulation of Shiga-like toxin expression in Escherichia coli is mediated by the fur locus. SB Calderwood JJ Mekalanos, J Bacteriol 1987 169 4759 4764 3308853
-
(1987)
J Bacteriol
, vol.169
, pp. 4759-4764
-
-
Calderwood, S.B.1
Mekalanos, J.J.2
-
16
-
-
0035961748
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
-
10.1093/dnares/8.1.11. 11258796
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. T Hayashi K Makino M Ohnishi K Kurokawa K Ishii K Yokoyama CG Han E Ohtsubo K Nakayama T Murata M Tanaka T Tobe T Iida H Takami T Honda C Sasakawa N Ogasawara T Yasunaga S Kuhara T Shiba M Hattori H Shinagawa, DNA Res 2001 8 11 22 10.1093/dnares/8.1.11 11258796
-
(2001)
DNA Res
, vol.8
, pp. 11-22
-
-
Hayashi, T.1
Makino, K.2
Ohnishi, M.3
Kurokawa, K.4
Ishii, K.5
Yokoyama, K.6
Han, C.G.7
Ohtsubo, E.8
Nakayama, K.9
Murata, T.10
Tanaka, M.11
Tobe, T.12
Iida, T.13
Takami, H.14
Honda, T.15
Sasakawa, C.16
Ogasawara, N.17
Yasunaga, T.18
Kuhara, S.19
Shiba, T.20
Hattori, M.21
Shinagawa, H.22
more..
-
17
-
-
0035945586
-
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
-
10.1038/35054089. 11206551
-
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. NT Perna G Plunkett 3rd V Burland B Mau JD Glasner DJ Rose GF Mayhew PS Evans J Gregor HA Kirkpatrick G Posfai J Hackett S Klink A Boutin Y Shao L Miller EJ Grotbeck NW Davis A Lim ET Dimalanta KD Potamousis J Apodaca TS Anantharaman J Lin G Yen DC Schwartz RA Welch FR Blattner, Nature 2001 409 529 533 10.1038/35054089 11206551
-
(2001)
Nature
, vol.409
, pp. 529-533
-
-
Perna, N.T.1
Plunkett III, G.2
Burland, V.3
Mau, B.4
Glasner, J.D.5
Rose, D.J.6
Mayhew, G.F.7
Evans, P.S.8
Gregor, J.9
Kirkpatrick, H.A.10
Posfai, G.11
Hackett, J.12
Klink, S.13
Boutin, A.14
Shao, Y.15
Miller, L.16
Grotbeck, E.J.17
Davis, N.W.18
Lim, A.19
Dimalanta, E.T.20
Potamousis, K.D.21
Apodaca, J.22
Anantharaman, T.S.23
Lin, J.24
Yen, G.25
Schwartz, D.C.26
Welch, R.A.27
Blattner, F.R.28
more..
-
18
-
-
26244461167
-
Dual regulatory pathways integrating the RcsC-RcsD-RcsB signalling system control enterohaemorrhagic Escherichia coli pathogenicity
-
10.1111/j.1365-2958.2005.04828.x. 16164568
-
Dual regulatory pathways integrating the RcsC-RcsD-RcsB signalling system control enterohaemorrhagic Escherichia coli pathogenicity. T Tobe H Ando H Ishikawa H Abe K Tashiro T Hayashi S Kuhara N Sugimoto, Mol Microbiol 2005 58 320 333 10.1111/j.1365-2958.2005.04828.x 16164568
-
(2005)
Mol Microbiol
, vol.58
, pp. 320-333
-
-
Tobe, T.1
Ando, H.2
Ishikawa, H.3
Abe, H.4
Tashiro, K.5
Hayashi, T.6
Kuhara, S.7
Sugimoto, N.8
-
19
-
-
0036264202
-
The genetic structure of Escherichia coli populations in primary and secondary habitats
-
11988526
-
The genetic structure of Escherichia coli populations in primary and secondary habitats. DM Gordon S Bauer JR Johnson, Microbiology 2002 148 1513 1522 11988526
-
(2002)
Microbiology
, vol.148
, pp. 1513-1522
-
-
Gordon, D.M.1
Bauer, S.2
Johnson, J.R.3
-
20
-
-
0028324804
-
Acid and base resistance in Escherichia coli and Shigella flexneri: Role of rpoS and growth pH
-
8132468
-
Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH. P Small D Blankenhorn D Welty E Zinser JL Slonczewski, J Bacteriol 1994 176 1729 1737 8132468
-
(1994)
J Bacteriol
, vol.176
, pp. 1729-1737
-
-
Small, P.1
Blankenhorn, D.2
Welty, D.3
Zinser, E.4
Slonczewski, J.L.5
-
21
-
-
0027390911
-
Acid resistance in enteric bacteria
-
8418063
-
Acid resistance in enteric bacteria. J Gorden PL Small, Infect Immun 1993 61 364 367 8418063
-
(1993)
Infect Immun
, vol.61
, pp. 364-367
-
-
Gorden, J.1
Small, P.L.2
-
22
-
-
0025332515
-
Starvation-induced cross protection against osmotic challenge in Escherichia coli
-
2185233
-
Starvation-induced cross protection against osmotic challenge in Escherichia coli. DE Jenkins SA Chaisson A Matin, J Bacteriol 1990 172 2779 2781 2185233
-
(1990)
J Bacteriol
, vol.172
, pp. 2779-2781
-
-
Jenkins, D.E.1
Chaisson, S.A.2
Matin, A.3
-
23
-
-
0036069537
-
Gene expression profiling of Escherichia coli growth transitions: An expanded stringent response model
-
10.1046/j.1365-2958.2002.03001.x. 12123445
-
Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model. DE Chang DJ Smalley T Conway, Mol Microbiol 2002 45 289 306 10.1046/j.1365-2958.2002.03001.x 12123445
-
(2002)
Mol Microbiol
, vol.45
, pp. 289-306
-
-
Chang, D.E.1
Smalley, D.J.2
Conway, T.3
-
24
-
-
6044228192
-
SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: Function of sigmaS-dependent genes and identification of their promoter sequences
-
15489429. 10.1128/JB.186.21.7186-7195.2004
-
SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences. S Lacour P Landini, J Bacteriol 2004 186 7186 7195 15489429 10.1128/JB.186.21.7186-7195.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 7186-7195
-
-
Lacour, S.1
Landini, P.2
-
25
-
-
14244256556
-
Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: {sigma}S-Dependent Genes, Promoters, and Sigma Factor Selectivity
-
15716429. 10.1128/JB.187.5.1591-1603.2005
-
Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: {sigma}S-Dependent Genes, Promoters, and Sigma Factor Selectivity. H Weber T Polen J Heuveling VF Wendisch R Hengge, J Bacteriol 2005 187 1591 1603 15716429 10.1128/JB.187.5.1591-1603.2005
-
(2005)
J Bacteriol
, vol.187
, pp. 1591-1603
-
-
Weber, H.1
Polen, T.2
Heuveling, J.3
Wendisch, V.F.4
Hengge, R.5
-
27
-
-
0036889029
-
Gene expression profiling of the pH response in Escherichia coli
-
12426343. 10.1128/JB.184.23.6551-6558.2002
-
Gene expression profiling of the pH response in Escherichia coli. DL Tucker N Tucker T Conway, J Bacteriol 2002 184 6551 6558 12426343 10.1128/JB.184.23.6551-6558.2002
-
(2002)
J Bacteriol
, vol.184
, pp. 6551-6558
-
-
Tucker, D.L.1
Tucker, N.2
Conway, T.3
-
28
-
-
33750500341
-
Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12
-
17026754. 10.1186/1471-2180-6-89
-
Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12. ET Hayes JC Wilks P Sanfilippo E Yohannes DP Tate BD Jones MD Radmacher SS BonDurant JL Slonczewski, BMC Microbiol 2006 6 89 17026754 10.1186/1471-2180-6- 89
-
(2006)
BMC Microbiol
, vol.6
, pp. 89
-
-
Hayes, E.T.1
Wilks, J.C.2
Sanfilippo, P.3
Yohannes, E.4
Tate, D.P.5
Jones, B.D.6
Radmacher, M.D.7
Bondurant, S.S.8
Slonczewski, J.L.9
-
29
-
-
0032693327
-
Functional genomics: Expression analysis of Escherichia coli growing on minimal and rich media
-
10515934
-
Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. H Tao C Bausch C Richmond FR Blattner T Conway, J Bacteriol 1999 181 6425 6440 10515934
-
(1999)
J Bacteriol
, vol.181
, pp. 6425-6440
-
-
Tao, H.1
Bausch, C.2
Richmond, C.3
Blattner, F.R.4
Conway, T.5
-
30
-
-
17644381300
-
Global gene expression profiling in Escherichia coli K12: Effects of oxygen availability and ArcA
-
10.1074/jbc.M414030200. 15699038
-
Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA. KA Salmon SP Hung NR Steffen R Krupp P Baldi GW Hatfield RP Gunsalus, J Biol Chem 2005 280 15084 15096 10.1074/jbc.M414030200 15699038
-
(2005)
J Biol Chem
, vol.280
, pp. 15084-15096
-
-
Salmon, K.A.1
Hung, S.P.2
Steffen, N.R.3
Krupp, R.4
Baldi, P.5
Hatfield, G.W.6
Gunsalus, R.P.7
-
31
-
-
13244289800
-
Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function
-
15659690. 10.1128/JB.187.3.1135-1160.2005
-
Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. Y Kang KD Weber Y Qiu PJ Kiley FR Blattner, J Bacteriol 2005 187 1135 1160 15659690 10.1128/JB.187.3.1135-1160.2005
-
(2005)
J Bacteriol
, vol.187
, pp. 1135-1160
-
-
Kang, Y.1
Weber, K.D.2
Qiu, Y.3
Kiley, P.J.4
Blattner, F.R.5
-
32
-
-
33646184857
-
A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth
-
10.1074/jbc.M512312200. 16377617
-
A reassessment of the FNR regulon and transcriptomic analysis of the effects of nitrate, nitrite, NarXL, and NarQP as Escherichia coli K12 adapts from aerobic to anaerobic growth. C Constantinidou JL Hobman L Griffiths MD Patel CW Penn JA Cole TW Overton, J Biol Chem 2006 281 4802 4815 10.1074/jbc.M512312200 16377617
-
(2006)
J Biol Chem
, vol.281
, pp. 4802-4815
-
-
Constantinidou, C.1
Hobman, J.L.2
Griffiths, L.3
Patel, M.D.4
Penn, C.W.5
Cole, J.A.6
Overton, T.W.7
-
33
-
-
33745512801
-
Growth of Escherichia coli MG1655 on LB medium: Determining metabolic strategy with transcriptional microarrays
-
10.1007/s00253-006-0392-8. 16645822
-
Growth of Escherichia coli MG1655 on LB medium: determining metabolic strategy with transcriptional microarrays. MV Baev D Baev AJ Radek JW Campbell, Appl Microbiol Biotechnol 2006 71 323 328 10.1007/s00253-006-0392-8 16645822
-
(2006)
Appl Microbiol Biotechnol
, vol.71
, pp. 323-328
-
-
Baev, M.V.1
Baev, D.2
Radek, A.J.3
Campbell, J.W.4
-
34
-
-
4544220703
-
Transcriptome of enterohemorrhagic Escherichia coli O157 adhering to eukaryotic plasma membranes
-
15322044. 10.1128/IAI.72.9.5452-5459.2004
-
Transcriptome of enterohemorrhagic Escherichia coli O157 adhering to eukaryotic plasma membranes. S Dahan S Knutton RK Shaw VF Crepin G Dougan G Frankel, Infect Immun 2004 72 5452 5459 15322044 10.1128/IAI.72.9.5452-5459.2004
-
(2004)
Infect Immun
, vol.72
, pp. 5452-5459
-
-
Dahan, S.1
Knutton, S.2
Shaw, R.K.3
Crepin, V.F.4
Dougan, G.5
Frankel, G.6
-
35
-
-
14744279815
-
Global expression of prophage genes in Escherichia coli O157:H7 strain EDL933 in response to norfloxacin
-
15728886. 10.1128/AAC.49.3.931-944.2005
-
Global expression of prophage genes in Escherichia coli O157:H7 strain EDL933 in response to norfloxacin. S Herold J Siebert A Huber H Schmidt, Antimicrob Agents Chemother 2005 49 931 944 15728886 10.1128/AAC.49.3.931-944. 2005
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 931-944
-
-
Herold, S.1
Siebert, J.2
Huber, A.3
Schmidt, H.4
-
36
-
-
0034889119
-
Quorum sensing is a global regulatory mechanism in enterohemorrhagic Escherichia coli O157:H7
-
11489873. 10.1128/JB.183.17.5187-5197.2001
-
Quorum sensing is a global regulatory mechanism in enterohemorrhagic Escherichia coli O157:H7. V Sperandio AG Torres JA Giron JB Kaper, J Bacteriol 2001 183 5187 5197 11489873 10.1128/JB.183.17.5187-5197.2001
-
(2001)
J Bacteriol
, vol.183
, pp. 5187-5197
-
-
Sperandio, V.1
Torres, A.G.2
Giron, J.A.3
Kaper, J.B.4
-
37
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
12154381
-
Design issues for cDNA microarray experiments. YH Yang T Speed, Nat Rev Genet 2002 3 579 588 12154381
-
(2002)
Nat Rev Genet
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
38
-
-
0036900895
-
Fundamentals of experimental design for cDNA microarrays
-
10.1038/ng1031. 12454643
-
Fundamentals of experimental design for cDNA microarrays. GA Churchill, Nat Genet 2002 32 Suppl 490 495 10.1038/ng1031 12454643
-
(2002)
Nat Genet
, vol.32
, pp. 490-495
-
-
Churchill, G.A.1
-
39
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
10.1089/10665270050514954. 11382364
-
Analysis of variance for gene expression microarray data. MK Kerr M Martin GA Churchill, J Comput Biol 2000 7 819 837 10.1089/10665270050514954 11382364
-
(2000)
J Comput Biol
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
40
-
-
24144445705
-
Improved statistical tests for differential gene expression by shrinking variance components estimates
-
10.1093/biostatistics/kxh018. 15618528
-
Improved statistical tests for differential gene expression by shrinking variance components estimates. X Cui JT Hwang J Qiu NJ Blades GA Churchill, Biostatistics 2005 6 59 75 10.1093/biostatistics/kxh018 15618528
-
(2005)
Biostatistics
, vol.6
, pp. 59-75
-
-
Cui, X.1
Hwang, J.T.2
Qiu, J.3
Blades, N.J.4
Churchill, G.A.5
-
41
-
-
0032729435
-
Exploring expression data: Identification and analysis of coexpressed genes
-
10568750. 10.1101/gr.9.11.1106
-
Exploring expression data: identification and analysis of coexpressed genes. LJ Heyer S Kruglyak S Yooseph, Genome Res 1999 9 1106 1115 10568750 10.1101/gr.9.11.1106
-
(1999)
Genome Res
, vol.9
, pp. 1106-1115
-
-
Heyer, L.J.1
Kruglyak, S.2
Yooseph, S.3
-
42
-
-
1842529555
-
Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling
-
10.1074/jbc.M313454200. 14711822
-
Probing the ArcA-P modulon of Escherichia coli by whole genome transcriptional analysis and sequence recognition profiling. X Liu P De Wulf, J Biol Chem 2004 279 12588 12597 10.1074/jbc.M313454200 14711822
-
(2004)
J Biol Chem
, vol.279
, pp. 12588-12597
-
-
Liu, X.1
De Wulf, P.2
-
43
-
-
0036177861
-
Quantitative assessment of oxygen availability: Perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli
-
11844770
-
Quantitative assessment of oxygen availability: perceived aerobiosis and its effect on flux distribution in the respiratory chain of Escherichia coli. S Alexeeva KJ Hellingwerf MJ Teixeira de Mattos, J Bacteriol 2002 184 1402 1406 11844770
-
(2002)
J Bacteriol
, vol.184
, pp. 1402-1406
-
-
Alexeeva, S.1
Hellingwerf, K.J.2
Teixeira De Mattos, M.J.3
-
44
-
-
0030067649
-
Effect of microaerophilic cell growth conditions on expression of the aerobic (cyoABCDE and cydAB) and anaerobic (narGHJI, frdABCD, and dmsABC) respiratory pathway genes in Escherichia coli
-
8576043
-
Effect of microaerophilic cell growth conditions on expression of the aerobic (cyoABCDE and cydAB) and anaerobic (narGHJI, frdABCD, and dmsABC) respiratory pathway genes in Escherichia coli. CP Tseng J Albrecht RP Gunsalus, J Bacteriol 1996 178 1094 1098 8576043
-
(1996)
J Bacteriol
, vol.178
, pp. 1094-1098
-
-
Tseng, C.P.1
Albrecht, J.2
Gunsalus, R.P.3
-
45
-
-
9144262494
-
Identification of Escherichia coli O157:H7 genes influencing colonization of the bovine gastrointestinal tract using signature-tagged mutagenesis
-
10.1099/mic.0.27448-0. 15528651
-
Identification of Escherichia coli O157:H7 genes influencing colonization of the bovine gastrointestinal tract using signature-tagged mutagenesis. F Dziva PM van Diemen MP Stevens AJ Smith TS Wallis, Microbiology 2004 150 3631 3645 10.1099/mic.0.27448-0 15528651
-
(2004)
Microbiology
, vol.150
, pp. 3631-3645
-
-
Dziva, F.1
Van Diemen, P.M.2
Stevens, M.P.3
Smith, A.J.4
Wallis, T.S.5
-
46
-
-
0031034211
-
Involvement of iclR and rpoS in the induction of acs, the gene for acetyl coenzyme a synthetase of Escherichia coli K-12
-
10.1111/j.1574-6968.1997.tb10178.x. 8997713
-
Involvement of iclR and rpoS in the induction of acs, the gene for acetyl coenzyme A synthetase of Escherichia coli K-12. S Shin SG Song DS Lee JG Pan C Park, FEMS Microbiol Lett 1997 146 103 108 10.1111/j.1574-6968.1997.tb10178.x 8997713
-
(1997)
FEMS Microbiol Lett
, vol.146
, pp. 103-108
-
-
Shin, S.1
Song, S.G.2
Lee, D.S.3
Pan, J.G.4
Park, C.5
-
47
-
-
33645524160
-
Cloning, expression, and characterization of fimbrial operon F9 from enterohemorrhagic Escherichia coli O157:H7
-
16552054. 10.1128/IAI.74.4.2233-2244.2006
-
Cloning, expression, and characterization of fimbrial operon F9 from enterohemorrhagic Escherichia coli O157:H7. AS Low F Dziva AG Torres JL Martinez T Rosser S Naylor K Spears N Holden A Mahajan J Findlay J Sales DG Smith JC Low MP Stevens DL Gally, Infect Immun 2006 74 2233 2244 16552054 10.1128/IAI.74.4.2233-2244.2006
-
(2006)
Infect Immun
, vol.74
, pp. 2233-2244
-
-
Low, A.S.1
Dziva, F.2
Torres, A.G.3
Martinez, J.L.4
Rosser, T.5
Naylor, S.6
Spears, K.7
Holden, N.8
Mahajan, A.9
Findlay, J.10
Sales, J.11
Smith, D.G.12
Low, J.C.13
Stevens, M.P.14
Gally, D.L.15
-
48
-
-
4344696800
-
Positive effects of multiple pch genes on expression of the locus of enterocyte effacement genes and adherence of enterohaemorrhagic Escherichia coli O157 : HHH7 to HEp-2 cells
-
10.1099/mic.0.27100-0. 15256577
-
Positive effects of multiple pch genes on expression of the locus of enterocyte effacement genes and adherence of enterohaemorrhagic Escherichia coli O157 : H7 to HEp-2 cells. S Iyoda H Watanabe, Microbiology 2004 150 2357 2571 10.1099/mic.0.27100-0 15256577
-
(2004)
Microbiology
, vol.150
, pp. 2357-2571
-
-
Iyoda, S.1
Watanabe, H.2
-
49
-
-
34147093024
-
Functional interactions between coexisting toxin-antitoxin systems of the ccd family in Escherichia coli O157:H7
-
17259320. 10.1128/JB.01679-06
-
Functional interactions between coexisting toxin-antitoxin systems of the ccd family in Escherichia coli O157:H7. M Wilbaux N Mine AM Guerout D Mazel L Van Melderen, J Bacteriol 2007 189 2712 2719 17259320 10.1128/JB.01679-06
-
(2007)
J Bacteriol
, vol.189
, pp. 2712-2719
-
-
Wilbaux, M.1
Mine, N.2
Guerout, A.M.3
Mazel, D.4
Van Melderen, L.5
-
50
-
-
32444443104
-
MurQ Etherase is required by Escherichia coli in order to metabolize anhydro-N-acetylmuramic acid obtained either from the environment or from its own cell wall
-
16452451. 10.1128/JB.188.4.1660-1662.2006
-
MurQ Etherase is required by Escherichia coli in order to metabolize anhydro-N-acetylmuramic acid obtained either from the environment or from its own cell wall. T Uehara K Suefuji T Jaeger C Mayer JT Park, J Bacteriol 2006 188 1660 1662 16452451 10.1128/JB.188.4.1660-1662.2006
-
(2006)
J Bacteriol
, vol.188
, pp. 1660-1662
-
-
Uehara, T.1
Suefuji, K.2
Jaeger, T.3
Mayer, C.4
Park, J.T.5
-
51
-
-
0035213758
-
Short- and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose-limited growth conditions in continuous culture and vice versa
-
10.1046/j.1462-2920.2001.00231.x. 11683869
-
Short- and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose-limited growth conditions in continuous culture and vice versa. LM Wick M Quadroni T Egli, Environ Microbiol 2001 3 588 599 10.1046/j.1462-2920.2001.00231.x 11683869
-
(2001)
Environ Microbiol
, vol.3
, pp. 588-599
-
-
Wick, L.M.1
Quadroni, M.2
Egli, T.3
-
52
-
-
33746061277
-
Global gene expression in Escherichia coli K-12 during short-term and long-term adaptation to glucose-limited continuous culture conditions
-
10.1099/mic.0.28939-0. 16804185
-
Global gene expression in Escherichia coli K-12 during short-term and long-term adaptation to glucose-limited continuous culture conditions. AG Franchini T Egli, Microbiology 2006 152 2111 2127 10.1099/mic.0.28939-0 16804185
-
(2006)
Microbiology
, vol.152
, pp. 2111-2127
-
-
Franchini, A.G.1
Egli, T.2
-
53
-
-
33749515943
-
An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination
-
16990433. 10.1073/pnas.0604891103
-
An extensive repertoire of type III secretion effectors in Escherichia coli O157 and the role of lambdoid phages in their dissemination. T Tobe SA Beatson H Taniguchi H Abe CM Bailey A Fivian R Younis S Matthews O Marches G Frankel T Hayashi MJ Pallen, Proc Natl Acad Sci U S A 2006 103 14941 14946 16990433 10.1073/pnas.0604891103
-
(2006)
Proc Natl Acad Sci U S a
, vol.103
, pp. 14941-14946
-
-
Tobe, T.1
Beatson, S.A.2
Taniguchi, H.3
Abe, H.4
Bailey, C.M.5
Fivian, A.6
Younis, R.7
Matthews, S.8
Marches, O.9
Frankel, G.10
Hayashi, T.11
Pallen, M.J.12
-
54
-
-
1642514566
-
GadE (YhiE): A novel activator involved in the response to acid environment in Escherichia coli
-
10.1099/mic.0.26659-0. 14702398
-
GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli. F Hommais E Krin JY Coppee C Lacroix E Yeramian A Danchin P Bertin, Microbiology 2004 150 61 72 10.1099/mic.0.26659-0 14702398
-
(2004)
Microbiology
, vol.150
, pp. 61-72
-
-
Hommais, F.1
Krin, E.2
Coppee, J.Y.3
Lacroix, C.4
Yeramian, E.5
Danchin, A.6
Bertin, P.7
-
55
-
-
0035788432
-
An activator of glutamate decarboxylase genes regulates the expression of enteropathogenic Escherichia coli virulence genes through control of the plasmid-encoded regulator, Per
-
10.1046/j.1365-2958.2001.02570.x. 11555293
-
An activator of glutamate decarboxylase genes regulates the expression of enteropathogenic Escherichia coli virulence genes through control of the plasmid-encoded regulator, Per. S Shin MP Castanie-Cornet JW Foster JA Crawford C Brinkley JB Kaper, Mol Microbiol 2001 41 1133 1150 10.1046/j.1365-2958.2001. 02570.x 11555293
-
(2001)
Mol Microbiol
, vol.41
, pp. 1133-1150
-
-
Shin, S.1
Castanie-Cornet, M.P.2
Foster, J.W.3
Crawford, J.A.4
Brinkley, C.5
Kaper, J.B.6
-
56
-
-
0242500345
-
Increased adherence to Caco-2 cells caused by disruption of the yhiE and yhiF genes in enterohemorrhagic Escherichia coli O157:H7
-
12704134. 10.1128/IAI.71.5.2598-2606.2003
-
Increased adherence to Caco-2 cells caused by disruption of the yhiE and yhiF genes in enterohemorrhagic Escherichia coli O157:H7. I Tatsuno K Nagano K Taguchi L Rong H Mori C Sasakawa, Infect Immun 2003 71 2598 2606 12704134 10.1128/IAI.71.5.2598-2606.2003
-
(2003)
Infect Immun
, vol.71
, pp. 2598-2606
-
-
Tatsuno, I.1
Nagano, K.2
Taguchi, K.3
Rong, L.4
Mori, H.5
Sasakawa, C.6
-
57
-
-
0033976325
-
Iha: A novel Escherichia coli O157:H7 adherence-conferring molecule encoded on a recently acquired chromosomal island of conserved structure
-
10678953. 10.1128/IAI.68.3.1400-1407.2000
-
Iha: a novel Escherichia coli O157:H7 adherence-conferring molecule encoded on a recently acquired chromosomal island of conserved structure. PI Tarr SS Bilge JC Vary Jr. S Jelacic RL Habeeb TR Ward MR Baylor TE Besser, Infect Immun 2000 68 1400 1407 10678953 10.1128/IAI.68.3.1400-1407.2000
-
(2000)
Infect Immun
, vol.68
, pp. 1400-1407
-
-
Tarr, P.I.1
Bilge, S.S.2
Vary Jr., J.C.3
Jelacic, S.4
Habeeb, R.L.5
Ward, T.R.6
Baylor, M.R.7
Besser, T.E.8
-
58
-
-
3042594729
-
Effect of anaerobiosis on expression of virulence factors in Vibrio cholerae
-
15213140. 10.1128/IAI.72.7.3961-3967.2004
-
Effect of anaerobiosis on expression of virulence factors in Vibrio cholerae. HH Krishnan A Ghosh K Paul R Chowdhury, Infect Immun 2004 72 3961 3967 15213140 10.1128/IAI.72.7.3961-3967.2004
-
(2004)
Infect Immun
, vol.72
, pp. 3961-3967
-
-
Krishnan, H.H.1
Ghosh, A.2
Paul, K.3
Chowdhury, R.4
-
59
-
-
0141780986
-
The global regulator ArcA modulates expression of virulence factors in Vibrio cholerae
-
14500477. 10.1128/IAI.71.10.5583-5589.2003
-
The global regulator ArcA modulates expression of virulence factors in Vibrio cholerae. N Sengupta K Paul R Chowdhury, Infect Immun 2003 71 5583 5589 14500477 10.1128/IAI.71.10.5583-5589.2003
-
(2003)
Infect Immun
, vol.71
, pp. 5583-5589
-
-
Sengupta, N.1
Paul, K.2
Chowdhury, R.3
-
60
-
-
33947124948
-
FNR Is a Global Regulator of Virulence and Anaerobic Metabolism in Salmonella enterica Serovar Typhimurium (ATCC 14028s)
-
17220229. 10.1128/JB.00726-06
-
FNR Is a Global Regulator of Virulence and Anaerobic Metabolism in Salmonella enterica Serovar Typhimurium (ATCC 14028s). RC Fink MR Evans S Porwollik A Vazquez-Torres J Jones-Carson B Troxell SJ Libby M McClelland HM Hassan, J Bacteriol 2007 189 2262 2273 17220229 10.1128/JB.00726-06
-
(2007)
J Bacteriol
, vol.189
, pp. 2262-2273
-
-
Fink, R.C.1
Evans, M.R.2
Porwollik, S.3
Vazquez-Torres, A.4
Jones-Carson, J.5
Troxell, B.6
Libby, S.J.7
McClelland, M.8
Hassan, H.M.9
-
61
-
-
0346494850
-
ColiBASE: An online database for Escherichia coli, Shigella and Salmonella comparative genomics
-
14681417. 10.1093/nar/gkh031
-
coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics. RR Chaudhuri AM Khan MJ Pallen, Nucleic Acids Res 2004 32 D296 9 14681417 10.1093/nar/gkh031
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 296-9
-
-
Chaudhuri, R.R.1
Khan, A.M.2
Pallen, M.J.3
-
62
-
-
33847203315
-
Maturation of functional type III secretion machinery by activation of anaerobic respiration in enterohaemorrhagic Escherichia coli
-
10.1099/mic.0.2006/000893-0. 17259617
-
Maturation of functional type III secretion machinery by activation of anaerobic respiration in enterohaemorrhagic Escherichia coli. H Ando H Abe N Sugimoto T Tobe, Microbiology 2007 153 464 473 10.1099/mic.0.2006/000893-0 17259617
-
(2007)
Microbiology
, vol.153
, pp. 464-473
-
-
Ando, H.1
Abe, H.2
Sugimoto, N.3
Tobe, T.4
-
63
-
-
12144289554
-
Dissecting virulence: Systematic and functional analyses of a pathogenicity island
-
14988506. 10.1073/pnas.0400326101
-
Dissecting virulence: systematic and functional analyses of a pathogenicity island. W Deng JL Puente S Gruenheid Y Li BA Vallance A Vazquez J Barba JA Ibarra P O'Donnell P Metalnikov K Ashman S Lee D Goode T Pawson BB Finlay, Proc Natl Acad Sci U S A 2004 101 3597 3602 14988506 10.1073/pnas.0400326101
-
(2004)
Proc Natl Acad Sci U S a
, vol.101
, pp. 3597-3602
-
-
Deng, W.1
Puente, J.L.2
Gruenheid, S.3
Li, Y.4
Vallance, B.A.5
Vazquez, A.6
Barba, J.7
Ibarra, J.A.8
O'Donnell, P.9
Metalnikov, P.10
Ashman, K.11
Lee, S.12
Goode, D.13
Pawson, T.14
Finlay, B.B.15
-
64
-
-
0038028679
-
Integration host factor (IHF) mediates repression of flagella in enteropathogenic and enterohaemorrhagic Escherichia coli
-
10.1099/mic.0.25970-0. 12686630
-
Integration host factor (IHF) mediates repression of flagella in enteropathogenic and enterohaemorrhagic Escherichia coli. C Yona-Nadler T Umanski S Aizawa D Friedberg I Rosenshine, Microbiology 2003 149 877 884 10.1099/mic.0.25970-0 12686630
-
(2003)
Microbiology
, vol.149
, pp. 877-884
-
-
Yona-Nadler, C.1
Umanski, T.2
Aizawa, S.3
Friedberg, D.4
Rosenshine, I.5
-
65
-
-
0036259813
-
Quorum-sensing Escherichia coli regulator A: A regulator of the LysR family involved in the regulation of the locus of enterocyte effacement pathogenicity island in enterohemorrhagic E. coli
-
12011002. 10.1128/IAI.70.6.3085-3093.2002
-
Quorum-sensing Escherichia coli regulator A: a regulator of the LysR family involved in the regulation of the locus of enterocyte effacement pathogenicity island in enterohemorrhagic E. coli. V Sperandio CC Li JB Kaper, Infect Immun 2002 70 3085 3093 12011002 10.1128/IAI.70.6.3085-3093.2002
-
(2002)
Infect Immun
, vol.70
, pp. 3085-3093
-
-
Sperandio, V.1
Li, C.C.2
Kaper, J.B.3
-
66
-
-
6044274611
-
Role of hha and ler in transcriptional regulation of the esp operon of enterohemorrhagic Escherichia coli O157:H7
-
15489441. 10.1128/JB.186.21.7290-7301.2004
-
Role of hha and ler in transcriptional regulation of the esp operon of enterohemorrhagic Escherichia coli O157:H7. VK Sharma RL Zuerner, J Bacteriol 2004 186 7290 7301 15489441 10.1128/JB.186.21.7290-7301.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 7290-7301
-
-
Sharma, V.K.1
Zuerner, R.L.2
-
67
-
-
0033622527
-
SdiA, an Escherichia coli homologue of quorum-sensing regulators, controls the expression of virulence factors in enterohaemorrhagic Escherichia coli O157:H7
-
10.1046/j.1365-2958.2000.02171.x. 11115115
-
SdiA, an Escherichia coli homologue of quorum-sensing regulators, controls the expression of virulence factors in enterohaemorrhagic Escherichia coli O157:H7. K Kanamaru I Tatsuno T Tobe C Sasakawa, Mol Microbiol 2000 38 805 816 10.1046/j.1365-2958.2000.02171.x 11115115
-
(2000)
Mol Microbiol
, vol.38
, pp. 805-816
-
-
Kanamaru, K.1
Tatsuno, I.2
Tobe, T.3
Sasakawa, C.4
-
68
-
-
4644257128
-
Comparative proteomic analysis of extracellular proteins of enterohemorrhagic and enteropathogenic Escherichia coli strains and their ihf and ler mutants
-
15345410. 10.1128/AEM.70.9.5274-5282.2004
-
Comparative proteomic analysis of extracellular proteins of enterohemorrhagic and enteropathogenic Escherichia coli strains and their ihf and ler mutants. M Li I Rosenshine SL Tung XH Wang D Friedberg CL Hew KY Leung, Appl Environ Microbiol 2004 70 5274 5282 15345410 10.1128/AEM.70.9.5274-5282. 2004
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5274-5282
-
-
Li, M.1
Rosenshine, I.2
Tung, S.L.3
Wang, X.H.4
Friedberg, D.5
Hew, C.L.6
Leung, K.Y.7
-
69
-
-
0033458708
-
Hierarchy in the expression of the locus of enterocyte effacement genes of enteropathogenic Escherichia coli
-
10.1046/j.1365-2958.1999.01655.x. 10594820
-
Hierarchy in the expression of the locus of enterocyte effacement genes of enteropathogenic Escherichia coli. D Friedberg T Umanski Y Fang I Rosenshine, Mol Microbiol 1999 34 941 952 10.1046/j.1365-2958.1999.01655.x 10594820
-
(1999)
Mol Microbiol
, vol.34
, pp. 941-952
-
-
Friedberg, D.1
Umanski, T.2
Fang, Y.3
Rosenshine, I.4
-
70
-
-
33744922108
-
Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the Whole Genome PCR scanning
-
10.1093/dnares/dsi026. 16766508
-
Complexity of the genomic diversity in enterohemorrhagic Escherichia coli O157 revealed by the combinational use of the O157 Sakai OligoDNA microarray and the Whole Genome PCR scanning. Y Ogura K Kurokawa T Ooka K Tashiro T Tobe M Ohnishi K Nakayama T Morimoto J Terajima H Watanabe S Kuhara T Hayashi, DNA Res 2006 13 3 14 10.1093/dnares/dsi026 16766508
-
(2006)
DNA Res
, vol.13
, pp. 3-14
-
-
Ogura, Y.1
Kurokawa, K.2
Ooka, T.3
Tashiro, K.4
Tobe, T.5
Ohnishi, M.6
Nakayama, K.7
Morimoto, T.8
Terajima, J.9
Watanabe, H.10
Kuhara, S.11
Hayashi, T.12
-
71
-
-
8744295941
-
TccP is an enterohaemorrhagic Escherichia coli O157:H7 type III effector protein that couples Tir to the actin-cytoskeleton
-
10.1111/j.1462-5822.2004.00459.x. 15527496
-
TccP is an enterohaemorrhagic Escherichia coli O157:H7 type III effector protein that couples Tir to the actin-cytoskeleton. J Garmendia AD Phillips MF Carlier Y Chong S Schuller O Marches S Dahan E Oswald RK Shaw S Knutton G Frankel, Cell Microbiol 2004 6 1167 1183 10.1111/j.1462-5822.2004.00459.x 15527496
-
(2004)
Cell Microbiol
, vol.6
, pp. 1167-1183
-
-
Garmendia, J.1
Phillips, A.D.2
Carlier, M.F.3
Chong, Y.4
Schuller, S.5
Marches, O.6
Dahan, S.7
Oswald, E.8
Shaw, R.K.9
Knutton, S.10
Frankel, G.11
-
72
-
-
4344656777
-
EspFU is a translocated EHEC effector that interacts with Tir and N-WASP and promotes Nck-independent actin assembly
-
10.1016/j.devcel.2004.07.004. 15296718
-
EspFU is a translocated EHEC effector that interacts with Tir and N-WASP and promotes Nck-independent actin assembly. KG Campellone D Robbins JM Leong, Dev Cell 2004 7 217 228 10.1016/j.devcel.2004.07.004 15296718
-
(2004)
Dev Cell
, vol.7
, pp. 217-228
-
-
Campellone, K.G.1
Robbins, D.2
Leong, J.M.3
-
73
-
-
19944430353
-
EspJ is a prophage-carried type III effector protein of attaching and effacing pathogens that modulates infection dynamics
-
15664905. 10.1128/IAI.73.2.679-686.2005
-
EspJ is a prophage-carried type III effector protein of attaching and effacing pathogens that modulates infection dynamics. S Dahan S Wiles RM La Ragione A Best MJ Woodward MP Stevens RK Shaw Y Chong S Knutton A Phillips G Frankel, Infect Immun 2005 73 679 686 15664905 10.1128/IAI.73.2.679-686.2005
-
(2005)
Infect Immun
, vol.73
, pp. 679-686
-
-
Dahan, S.1
Wiles, S.2
La Ragione, R.M.3
Best, A.4
Woodward, M.J.5
Stevens, M.P.6
Shaw, R.K.7
Chong, Y.8
Knutton, S.9
Phillips, A.10
Frankel, G.11
-
74
-
-
33947175461
-
A Novel Two-Component Signaling System That Activates Transcription of an Enterohemorrhagic Escherichia coli Effector Involved in Remodeling of Host Actin
-
17220220. 10.1128/JB.01848-06
-
A Novel Two-Component Signaling System That Activates Transcription of an Enterohemorrhagic Escherichia coli Effector Involved in Remodeling of Host Actin. NC Reading AG Torres MM Kendall DT Hughes K Yamamoto V Sperandio, J Bacteriol 2007 189 2468 2476 17220220 10.1128/JB.01848-06
-
(2007)
J Bacteriol
, vol.189
, pp. 2468-2476
-
-
Reading, N.C.1
Torres, A.G.2
Kendall, M.M.3
Hughes, D.T.4
Yamamoto, K.5
Sperandio, V.6
-
75
-
-
20444375066
-
Operon structure and gene expression of the espJ - TccP locus of enterohaemorrhagic Escherichia coli O157:H7
-
10.1016/j.femsle.2005.04.035. 15936159
-
Operon structure and gene expression of the espJ - tccP locus of enterohaemorrhagic Escherichia coli O157:H7. J Garmendia G Frankel, FEMS Microbiol Lett 2005 247 137 145 10.1016/j.femsle.2005.04.035 15936159
-
(2005)
FEMS Microbiol Lett
, vol.247
, pp. 137-145
-
-
Garmendia, J.1
Frankel, G.2
-
77
-
-
9444285788
-
Escherichia coli acid resistance: Tales of an amateur acidophile
-
10.1038/nrmicro1021. 15494746
-
Escherichia coli acid resistance: tales of an amateur acidophile. JW Foster, Nat Rev Microbiol 2004 2 898 907 10.1038/nrmicro1021 15494746
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 898-907
-
-
Foster, J.W.1
-
78
-
-
34147172119
-
Products of the Escherichia coli acid fitness island attenuate metabolite stress at extremely low pH and mediate a cell density-dependent acid resistance
-
17259322. 10.1128/JB.01490-06
-
Products of the Escherichia coli acid fitness island attenuate metabolite stress at extremely low pH and mediate a cell density-dependent acid resistance. AK Mates AK Sayed JW Foster, J Bacteriol 2007 189 2759 2768 17259322 10.1128/JB.01490-06
-
(2007)
J Bacteriol
, vol.189
, pp. 2759-2768
-
-
Mates, A.K.1
Sayed, A.K.2
Foster, J.W.3
-
79
-
-
0035088098
-
Global analysis of Escherichia coli gene expression during the acetate- induced acid tolerance response
-
11244055. 10.1128/JB.183.7.2178-2186.2001
-
Global analysis of Escherichia coli gene expression during the acetate- induced acid tolerance response. CN Arnold J McElhanon A Lee R Leonhart DA Siegele, J Bacteriol 2001 183 2178 2186 11244055 10.1128/JB.183.7.2178-2186.2001
-
(2001)
J Bacteriol
, vol.183
, pp. 2178-2186
-
-
Arnold, C.N.1
McElhanon, J.2
Lee, A.3
Leonhart, R.4
Siegele, D.A.5
-
80
-
-
6044275962
-
Characterization of EvgAS-YdeO-GadE branched regulatory circuit governing glutamate-dependent acid resistance in Escherichia coli
-
15489450. 10.1128/JB.186.21.7378-7389.2004
-
Characterization of EvgAS-YdeO-GadE branched regulatory circuit governing glutamate-dependent acid resistance in Escherichia coli. Z Ma N Masuda JW Foster, J Bacteriol 2004 186 7378 7389 15489450 10.1128/JB.186.21.7378-7389.2004
-
(2004)
J Bacteriol
, vol.186
, pp. 7378-7389
-
-
Ma, Z.1
Masuda, N.2
Foster, J.W.3
-
82
-
-
17844370503
-
Prokaryotic toxin-antitoxin stress response loci
-
10.1038/nrmicro1147. 15864262
-
Prokaryotic toxin-antitoxin stress response loci. K Gerdes SK Christensen A Lobner-Olesen, Nat Rev Microbiol 2005 3 371 382 10.1038/nrmicro1147 15864262
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 371-382
-
-
Gerdes, K.1
Christensen, S.K.2
Lobner-Olesen, A.3
-
83
-
-
35648948203
-
What is the benefit for E. coli to have multiple toxin-antitoxin systems in their genomes?
-
17513477
-
What is the benefit for E. coli to have multiple toxin-antitoxin systems in their genomes? V Tsilibaris G Maenhaut-Michel N Mine L Van Melderen, J Bacteriol 2007 17513477
-
(2007)
J Bacteriol
-
-
Tsilibaris, V.1
Maenhaut-Michel, G.2
Mine, N.3
Van Melderen, L.4
-
84
-
-
33846706707
-
Escherichia coli dinJ-yafQ genes act as a toxin-antitoxin module
-
10.1111/j.1574-6968.2006.00563.x. 17263853
-
Escherichia coli dinJ-yafQ genes act as a toxin-antitoxin module. R Motiejunaite J Armalyte A Markuckas E Suziedeliene, FEMS Microbiol Lett 2007 268 112 119 10.1111/j.1574-6968.2006.00563.x 17263853
-
(2007)
FEMS Microbiol Lett
, vol.268
, pp. 112-119
-
-
Motiejunaite, R.1
Armalyte, J.2
Markuckas, A.3
Suziedeliene, E.4
-
85
-
-
0027522090
-
ChpA and chpB, Escherichia coli chromosomal homologs of the pem locus responsible for stable maintenance of plasmid R100
-
8226627
-
chpA and chpB, Escherichia coli chromosomal homologs of the pem locus responsible for stable maintenance of plasmid R100. Y Masuda K Miyakawa Y Nishimura E Ohtsubo, J Bacteriol 1993 175 6850 6856 8226627
-
(1993)
J Bacteriol
, vol.175
, pp. 6850-6856
-
-
Masuda, Y.1
Miyakawa, K.2
Nishimura, Y.3
Ohtsubo, E.4
-
86
-
-
0041825422
-
Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA
-
10.1016/S0022-2836(03)00922-7. 12972253
-
Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA. SK Christensen K Pedersen FG Hansen K Gerdes, J Mol Biol 2003 332 809 819 10.1016/S0022-2836(03)00922-7 12972253
-
(2003)
J Mol Biol
, vol.332
, pp. 809-819
-
-
Christensen, S.K.1
Pedersen, K.2
Hansen, F.G.3
Gerdes, K.4
-
88
-
-
0021683078
-
Shiga-like toxin-converting phages from Escherichia coli strains that cause hemorrhagic colitis or infantile diarrhea
-
10.1126/science.6387911. 6387911
-
Shiga-like toxin-converting phages from Escherichia coli strains that cause hemorrhagic colitis or infantile diarrhea. AD O'Brien JW Newland SF Miller RK Holmes HW Smith SB Formal, Science 1984 226 694 696 10.1126/science.6387911 6387911
-
(1984)
Science
, vol.226
, pp. 694-696
-
-
O'Brien, A.D.1
Newland, J.W.2
Miller, S.F.3
Holmes, R.K.4
Smith, H.W.5
Formal, S.B.6
-
89
-
-
0032570059
-
Arrangement and functional identification of genes in the regulatory region of lambdoid phage H-19B, a carrier of a Shiga-like toxin
-
10.1016/S0378-1119(98)00236-4. 9858702
-
Arrangement and functional identification of genes in the regulatory region of lambdoid phage H-19B, a carrier of a Shiga-like toxin. MN Neely DI Friedman, Gene 1998 223 105 113 10.1016/S0378-1119(98)00236-4 9858702
-
(1998)
Gene
, vol.223
, pp. 105-113
-
-
Neely, M.N.1
Friedman, D.I.2
-
90
-
-
0033056680
-
Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7: Shiga toxin as a phage late-gene product
-
10074068
-
Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7: Shiga toxin as a phage late-gene product. G Plunkett 3rd DJ Rose TJ Durfee FR Blattner, J Bacteriol 1999 181 1767 1778 10074068
-
(1999)
J Bacteriol
, vol.181
, pp. 1767-1778
-
-
Plunkett III, G.1
Rose, D.J.2
Durfee, T.J.3
Blattner, F.R.4
-
91
-
-
0031746606
-
Functional and genetic analysis of regulatory regions of coliphage H-19B: Location of shiga-like toxin and lysis genes suggest a role for phage functions in toxin release
-
10.1046/j.1365-2958.1998.00890.x. 9680214
-
Functional and genetic analysis of regulatory regions of coliphage H-19B: location of shiga-like toxin and lysis genes suggest a role for phage functions in toxin release. MN Neely DI Friedman, Mol Microbiol 1998 28 1255 1267 10.1046/j.1365-2958.1998.00890.x 9680214
-
(1998)
Mol Microbiol
, vol.28
, pp. 1255-1267
-
-
Neely, M.N.1
Friedman, D.I.2
-
92
-
-
0033772641
-
Toxin gene expression by shiga toxin-producing Escherichia coli: The role of antibiotics and the bacterial SOS response
-
10998375
-
Toxin gene expression by shiga toxin-producing Escherichia coli: the role of antibiotics and the bacterial SOS response. PT Kimmitt CR Harwood MR Barer, Emerg Infect Dis 2000 6 458 465 10998375
-
(2000)
Emerg Infect Dis
, vol.6
, pp. 458-465
-
-
Kimmitt, P.T.1
Harwood, C.R.2
Barer, M.R.3
-
93
-
-
33846706846
-
Impact of antibiotic stress on acid and heat tolerance and virulence factor expression of Escherichia coli O157:H7
-
17265880
-
Impact of antibiotic stress on acid and heat tolerance and virulence factor expression of Escherichia coli O157:H7. RO Azizoglu M Drake, J Food Prot 2007 70 194 199 17265880
-
(2007)
J Food Prot
, vol.70
, pp. 194-199
-
-
Azizoglu, R.O.1
Drake, M.2
-
94
-
-
0038384687
-
Acid adaptation and starvation effects on Shiga toxin production by Escherichia coli O157:H7
-
12800996
-
Acid adaptation and starvation effects on Shiga toxin production by Escherichia coli O157:H7. B Leenanon D Elhanafi MA Drake, J Food Prot 2003 66 970 977 12800996
-
(2003)
J Food Prot
, vol.66
, pp. 970-977
-
-
Leenanon, B.1
Elhanafi, D.2
Drake, M.A.3
-
95
-
-
0035212901
-
Association of the urease gene with enterohemorrhagic Escherichia coli strains irrespective of their serogroups
-
11724879. 10.1128/JCM.39.12.4541-4543.2001
-
Association of the urease gene with enterohemorrhagic Escherichia coli strains irrespective of their serogroups. M Nakano T Iida M Ohnishi K Kurokawa A Takahashi T Tsukamoto T Yasunaga T Hayashi T Honda, J Clin Microbiol 2001 39 4541 4543 11724879 10.1128/JCM.39.12.4541-4543.2001
-
(2001)
J Clin Microbiol
, vol.39
, pp. 4541-4543
-
-
Nakano, M.1
Iida, T.2
Ohnishi, M.3
Kurokawa, K.4
Takahashi, A.5
Tsukamoto, T.6
Yasunaga, T.7
Hayashi, T.8
Honda, T.9
-
96
-
-
0036718561
-
Genomic variability of O islands encoding tellurite resistance in enterohemorrhagic Escherichia coli O157:H7 isolates
-
12169592. 10.1128/JB.184.17.4690-4698.2002
-
Genomic variability of O islands encoding tellurite resistance in enterohemorrhagic Escherichia coli O157:H7 isolates. DE Taylor M Rooker M Keelan LK Ng I Martin NT Perna NT Burland FR Blattner, J Bacteriol 2002 184 4690 4698 12169592 10.1128/JB.184.17.4690-4698.2002
-
(2002)
J Bacteriol
, vol.184
, pp. 4690-4698
-
-
Taylor, D.E.1
Rooker, M.2
Keelan, M.3
Ng, L.K.4
Martin, I.5
Perna, N.T.6
Burland, N.T.7
Blattner, F.R.8
-
97
-
-
13844256141
-
Distribution of the urease gene cluster among and urease activities of enterohemorrhagic Escherichia coli O157 isolates from humans
-
15695643. 10.1128/JCM.43.2.546-550.2005
-
Distribution of the urease gene cluster among and urease activities of enterohemorrhagic Escherichia coli O157 isolates from humans. AW Friedrich R Kock M Bielaszewska W Zhang H Karch W Mathys, J Clin Microbiol 2005 43 546 550 15695643 10.1128/JCM.43.2.546-550.2005
-
(2005)
J Clin Microbiol
, vol.43
, pp. 546-550
-
-
Friedrich, A.W.1
Kock, R.2
Bielaszewska, M.3
Zhang, W.4
Karch, H.5
Mathys, W.6
-
98
-
-
6444241898
-
Urease activity of enterohaemorrhagic Escherichia coli depends on a specific one-base substitution in ureD
-
10.1099/mic.0.27280-0. 15470125
-
Urease activity of enterohaemorrhagic Escherichia coli depends on a specific one-base substitution in ureD. M Nakano T Iida T Honda, Microbiology 2004 150 3483 3489 10.1099/mic.0.27280-0 15470125
-
(2004)
Microbiology
, vol.150
, pp. 3483-3489
-
-
Nakano, M.1
Iida, T.2
Honda, T.3
-
99
-
-
4043150746
-
Influence of animal origin and lineage on survival of Escherichia coli O157:H7 strains in strong and weak acid challenges
-
15330520
-
Influence of animal origin and lineage on survival of Escherichia coli O157:H7 strains in strong and weak acid challenges. CE Saridakis RP Johnson A Benson K Ziebell CL Gyles, J Food Prot 2004 67 1591 1596 15330520
-
(2004)
J Food Prot
, vol.67
, pp. 1591-1596
-
-
Saridakis, C.E.1
Johnson, R.P.2
Benson, A.3
Ziebell, K.4
Gyles, C.L.5
-
100
-
-
18144396807
-
Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli
-
10.1074/jbc.M414050200. 15705577
-
Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli. M Liu T Durfee JE Cabrera K Zhao DJ Jin FR Blattner, J Biol Chem 2005 280 15921 15927 10.1074/jbc.M414050200 15705577
-
(2005)
J Biol Chem
, vol.280
, pp. 15921-15927
-
-
Liu, M.1
Durfee, T.2
Cabrera, J.E.3
Zhao, K.4
Jin, D.J.5
Blattner, F.R.6
-
101
-
-
0344443759
-
A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli
-
10.1074/jbc.M307968200. 12963713
-
A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli. E Fischer U Sauer, J Biol Chem 2003 278 46446 46451 10.1074/jbc.M307968200 12963713
-
(2003)
J Biol Chem
, vol.278
, pp. 46446-46451
-
-
Fischer, E.1
Sauer, U.2
-
102
-
-
0036736638
-
The apparent clock-like evolution of Escherichia coli in glucose-limited chemostats is reproducible at large but not at small population sizes and can be explained with Monod kinetics
-
12213934
-
The apparent clock-like evolution of Escherichia coli in glucose-limited chemostats is reproducible at large but not at small population sizes and can be explained with Monod kinetics. LM Wick H Weilenmann T Egli, Microbiology 2002 148 2889 2902 12213934
-
(2002)
Microbiology
, vol.148
, pp. 2889-2902
-
-
Wick, L.M.1
Weilenmann, H.2
Egli, T.3
-
103
-
-
0033570004
-
Massive outbreak of Escherichia coli O157:H7 infection in schoolchildren in Sakai City, Japan, associated with consumption of white radish sprouts
-
10522649
-
Massive outbreak of Escherichia coli O157:H7 infection in schoolchildren in Sakai City, Japan, associated with consumption of white radish sprouts. H Michino K Araki S Minami S Takaya N Sakai M Miyazaki A Ono H Yanagawa, Am J Epidemiol 1999 150 787 796 10522649
-
(1999)
Am J Epidemiol
, vol.150
, pp. 787-796
-
-
Michino, H.1
Araki, K.2
Minami, S.3
Takaya, S.4
Sakai, N.5
Miyazaki, M.6
Ono, A.7
Yanagawa, H.8
-
105
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
10.1126/science.277.5331.1453. 9278503
-
The complete genome sequence of Escherichia coli K-12. FR Blattner G Plunkett 3rd CA Bloch NT Perna V Burland M Riley J Collado-Vides JD Glasner CK Rode GF Mayhew J Gregor NW Davis HA Kirkpatrick MA Goeden DJ Rose B Mau Y Shao, Science 1997 277 1453 1474 10.1126/science.277.5331.1453 9278503
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
106
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
12824337. 10.1093/nar/gkg595
-
Mfold web server for nucleic acid folding and hybridization prediction. M Zuker, Nucleic Acids Res 2003 31 3406 3415 12824337 10.1093/nar/gkg595
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
107
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
10547847
-
Primer3 on the WWW for general users and for biologist programmers. S Rozen H Skaletsky, Methods Mol Biol 2000 132 365 386 10547847
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
108
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
11328886. 10.1093/nar/29.9.e45
-
A new mathematical model for relative quantification in real-time RT-PCR. MW Pfaffl, Nucleic Acids Res 2001 29 e45 11328886 10.1093/nar/29.9.e45
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 45
-
-
Pfaffl, M.W.1
-
109
-
-
0036898577
-
Microarray data normalization and transformation
-
10.1038/ng1032. 12454644
-
Microarray data normalization and transformation. J Quackenbush, Nat Genet 2002 32 Suppl 496 501 10.1038/ng1032 12454644
-
(2002)
Nat Genet
, vol.32
, pp. 496-501
-
-
Quackenbush, J.1
-
111
-
-
39049109160
-
-
R/MAANOVA, http://www.jax.org/staff/churchill/labsite/software/anova/ rmaanova
-
-
-
-
112
-
-
0346021343
-
Linear models for microarray data analysis: Hidden similarities and differences
-
10.1089/106652703322756131. 14980016
-
Linear models for microarray data analysis: hidden similarities and differences. MK Kerr, J Comput Biol 2003 10 891 901 10.1089/106652703322756131 14980016
-
(2003)
J Comput Biol
, vol.10
, pp. 891-901
-
-
Kerr, M.K.1
-
113
-
-
0037276175
-
Statistical tests for differential expression in cDNA microarray experiments
-
12702200. 10.1186/gb-2003-4-4-210
-
Statistical tests for differential expression in cDNA microarray experiments. X Cui GA Churchill, Genome Biol 2003 4 210 12702200 10.1186/gb-2003-4-4-210
-
(2003)
Genome Biol
, vol.4
, pp. 210
-
-
Cui, X.1
Churchill, G.A.2
-
114
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
16199517. 10.1073/pnas.0506580102
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. A Subramanian P Tamayo VK Mootha S Mukherjee BL Ebert MA Gillette A Paulovich SL Pomeroy TR Golub ES Lander JP Mesirov, Proc Natl Acad Sci U S A 2005 102 15545 15550 16199517 10.1073/pnas.0506580102
-
(2005)
Proc Natl Acad Sci U S a
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
|